Wall clock time and date at job start Tue Mar 31 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00146 * 0.02562 * 7 2 1 10 10 O 1.42108 * 106.40130 * 293.54086 * 9 7 2 11 11 O 1.42098 * 106.40149 * 66.45372 * 9 7 2 12 12 N 1.65601 * 107.21953 * 180.02562 * 9 7 2 13 13 C 1.46935 * 120.60753 * 269.72089 * 12 9 7 14 14 C 1.53698 * 108.50085 * 125.84570 * 13 12 9 15 15 C 1.52552 * 109.35952 * 54.08408 * 14 13 12 16 16 C 1.53710 * 110.13884 * 177.75577 * 15 14 13 17 17 N 1.47205 * 103.60614 * 241.20999 * 16 15 14 18 18 C 1.34074 * 108.85298 * 0.02562 * 17 16 15 19 19 O 1.21512 * 123.09108 * 180.02562 * 18 17 16 20 20 O 1.33923 * 113.81501 * 359.97438 * 18 17 16 21 21 C 1.52555 * 110.74043 * 299.83438 * 15 14 13 22 22 C 1.46932 * 120.61060 * 89.99879 * 12 9 7 23 23 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 24 24 H 1.09004 * 109.58891 * 245.65531 * 13 12 9 25 25 H 1.08997 * 109.59314 * 6.10926 * 13 12 9 26 26 H 1.09005 * 109.61066 * 294.06097 * 14 13 12 27 27 H 1.08993 * 109.41878 * 173.99384 * 14 13 12 28 28 H 1.09000 * 110.60036 * 359.74000 * 16 15 14 29 29 H 1.09001 * 110.59455 * 122.53044 * 16 15 14 30 30 H 0.97009 * 125.57467 * 180.02562 * 17 16 15 31 31 H 1.09009 * 109.47255 * 300.05861 * 21 15 14 32 32 H 1.08997 * 109.48754 * 180.02562 * 21 15 14 33 33 H 1.08995 * 109.59519 * 353.89273 * 22 12 9 34 34 H 1.09003 * 109.59252 * 114.34200 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 16 1.1235 -2.7200 -0.0136 10 8 0.4508 -2.8015 1.2355 11 8 0.4517 -2.7890 -1.2639 12 7 2.2482 -3.9355 -0.0185 13 6 2.7527 -4.4828 -1.2854 14 6 4.2876 -4.4018 -1.2747 15 6 4.8216 -5.0899 -0.0223 16 6 6.3585 -5.0685 -0.0213 17 7 6.7247 -6.4943 -0.0275 18 6 5.6035 -7.2295 -0.0320 19 8 5.6070 -8.4446 -0.0372 20 8 4.4795 -6.5015 -0.0293 21 6 4.2859 -4.4134 1.2358 22 6 2.7554 -4.4906 1.2438 23 1 -0.4850 0.8401 0.0040 24 1 2.4396 -5.5221 -1.3850 25 1 2.3602 -3.8989 -2.1179 26 1 4.5988 -3.3572 -1.2762 27 1 4.6829 -4.9002 -2.1598 28 1 6.7358 -4.5719 -0.9152 29 1 6.7346 -4.5776 0.8764 30 1 7.6293 -6.8446 -0.0282 31 1 4.5973 -3.3688 1.2473 32 1 4.6799 -4.9200 2.1168 33 1 2.3645 -3.9121 2.0808 34 1 2.4424 -5.5305 1.3377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:03 Heat of formation + Delta-G solvation = -160.907510 kcal Electronic energy + Delta-G solvation = -22358.208880 eV Core-core repulsion = 18803.738776 eV Total energy + Delta-G solvation = -3554.470104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.88583 -38.22206 -36.31266 -35.35135 -34.84316 -34.00417 -33.15023 -31.76697 -31.01399 -26.65133 -26.18187 -23.44378 -22.88176 -22.64323 -20.63247 -18.80845 -17.84530 -17.28437 -16.73600 -16.49043 -16.11768 -15.15311 -15.14404 -14.95469 -14.46453 -14.20166 -14.06398 -13.73787 -13.66437 -13.33101 -13.29350 -12.12786 -12.12679 -11.83104 -11.66050 -11.46212 -11.27731 -11.14887 -10.99814 -10.72731 -10.65972 -10.43473 -10.33689 -10.09189 -10.07286 -9.54294 -9.30329 -8.97680 -8.29954 -6.74712 -5.37834 2.19274 2.62702 2.66851 3.01223 3.08766 3.13107 3.39957 3.92150 3.99649 4.36043 4.45320 4.52972 4.59019 4.98045 5.08224 5.11499 5.21326 5.47276 5.55876 5.62966 5.66323 5.76002 5.86524 5.98988 6.03588 6.19101 6.36311 6.39546 6.59256 6.73307 7.21684 7.26704 7.50203 7.90120 7.99728 8.83247 10.18925 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.005337 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.111519 B = 5244.729159 C = 5739.419017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.275 1.275 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.713 3.287 10 O -1.003 7.003 11 O -1.003 7.003 12 N -1.012 6.012 13 C 0.129 3.871 14 C -0.135 4.135 15 C 0.102 3.898 16 C 0.072 3.928 17 N -0.739 5.739 18 C 0.643 3.357 19 O -0.532 6.532 20 O -0.309 6.309 21 C -0.135 4.135 22 C 0.129 3.871 23 H 0.291 0.709 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.432 0.568 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.473 -4.867 -0.008 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.187 1.187 6 H -0.200 1.200 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.993 6.993 11 O -0.993 6.993 12 N -0.847 5.847 13 C 0.002 3.998 14 C -0.174 4.174 15 C 0.065 3.935 16 C -0.053 4.053 17 N -0.412 5.412 18 C 0.396 3.604 19 O -0.418 6.418 20 O -0.219 6.219 21 C -0.174 4.174 22 C 0.002 3.998 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.274 0.726 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.890 -5.581 -0.019 14.046 hybrid contribution 1.648 1.207 0.012 2.043 sum 14.538 -4.374 -0.007 15.182 Atomic orbital electron populations 1.69899 1.06809 1.30781 1.39909 1.24759 0.94449 1.00790 0.88573 0.86174 0.80112 0.80182 0.79123 1.19239 1.18721 1.19996 1.30598 1.05968 1.11758 1.66939 0.88005 1.00601 0.72202 0.72951 0.72816 1.93357 1.72678 1.87541 1.45763 1.93356 1.72690 1.87578 1.45701 1.58253 1.62350 1.54537 1.09559 1.21247 0.91448 1.00119 0.86964 1.22305 0.98585 1.01591 0.94931 1.22857 0.92550 0.78748 0.99362 1.22990 0.94531 0.83059 1.04704 1.46012 1.09000 1.07014 1.79184 1.18709 0.80034 0.85952 0.75694 1.91056 1.85693 1.09227 1.55781 1.87362 1.29146 1.19302 1.86135 1.22232 0.98602 1.01690 0.94880 1.21151 0.91499 1.00038 0.87091 0.89837 0.91533 0.88380 0.88362 0.90232 0.88687 0.88658 0.72585 0.88376 0.90196 0.88389 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.08 13.19 55.43 0.73 -23.35 16 2 C 0.13 3.52 5.46 -17.82 -0.10 3.43 16 3 Si 0.92 19.45 29.54 -169.99 -5.02 14.43 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -1.02 -26.19 9.75 30.60 0.30 -25.89 16 8 H 0.10 2.31 7.81 -52.49 -0.41 1.90 16 9 S 2.71 68.99 4.98 -107.50 -0.53 68.45 16 10 O -1.00 -28.34 16.72 -57.17 -0.96 -29.30 16 11 O -1.00 -28.33 16.72 -57.17 -0.96 -29.29 16 12 N -1.01 -19.25 3.28 -113.18 -0.37 -19.62 16 13 C 0.13 2.07 6.24 -3.44 -0.02 2.05 16 14 C -0.14 -1.61 4.95 -26.60 -0.13 -1.74 16 15 C 0.10 1.17 0.91 -90.71 -0.08 1.08 16 16 C 0.07 0.55 7.33 -3.29 -0.02 0.53 16 17 N -0.74 -6.72 6.41 -64.79 -0.42 -7.14 16 18 C 0.64 8.96 9.16 53.74 0.49 9.45 16 19 O -0.53 -9.42 18.04 -19.11 -0.34 -9.77 16 20 O -0.31 -4.42 9.76 -38.21 -0.37 -4.79 16 21 C -0.13 -1.61 4.93 -26.83 -0.13 -1.74 16 22 C 0.13 2.07 6.21 -3.67 -0.02 2.05 16 23 H 0.29 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.07 1.04 7.98 -51.93 -0.41 0.63 16 25 H 0.10 1.66 7.11 -51.93 -0.37 1.29 16 26 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.55 7.71 -51.93 -0.40 0.15 16 29 H 0.10 0.55 7.71 -51.93 -0.40 0.15 16 30 H 0.43 2.82 8.96 -40.82 -0.37 2.46 16 31 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.66 7.11 -51.93 -0.37 1.29 16 34 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 LS Contribution 298.16 15.07 4.49 4.49 Total: -1.00 -36.76 298.16 -7.44 -44.20 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.97 Total: 2.46 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 0.28 Total: -10.79 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.05 Total: -50.11 kcal Atomic # 8 Polarization: -70.52 SS G_CDS: -2.63 Total: -73.15 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 68.99 SS G_CDS: -0.53 Total: 68.45 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.76 -7.44 -44.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.707 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds