Wall clock time and date at job start Tue Mar 31 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42909 * 113.99690 * 2 1 4 4 C 1.52998 * 109.46909 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47194 * 65.00253 * 4 3 2 6 6 C 1.42902 * 114.00249 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47206 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.47019 * 54.99643 * 7 6 5 9 9 O 1.42903 * 109.47159 * 295.00550 * 7 6 5 10 10 C 1.52996 * 109.47190 * 175.00015 * 7 6 5 11 11 N 1.46904 * 109.47327 * 184.99897 * 10 7 6 12 12 C 1.47843 * 110.99640 * 69.15576 * 11 10 7 13 13 C 1.54916 * 104.79337 * 146.36598 * 12 11 10 14 14 C 1.55398 * 101.74107 * 323.02060 * 13 12 11 15 15 O 1.42902 * 110.67651 * 277.17865 * 14 13 12 16 16 C 1.50693 * 110.84773 * 153.86113 * 14 13 12 17 17 H 1.08003 * 120.00166 * 246.46481 * 16 14 13 18 18 C 1.37883 * 119.99850 * 66.46355 * 16 14 13 19 19 N 1.31508 * 119.99898 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99869 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47362 * 90.00177 * 20 18 16 22 22 H 1.48504 * 109.46872 * 209.99961 * 20 18 16 23 23 H 1.48499 * 109.47348 * 329.99947 * 20 18 16 24 24 C 1.47439 * 111.00045 * 190.00285 * 11 10 7 25 25 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47409 * 299.99901 * 1 2 3 27 27 H 1.09000 * 109.47698 * 60.00021 * 1 2 3 28 28 H 1.09002 * 109.46413 * 60.00425 * 3 2 1 29 29 H 1.08995 * 109.47135 * 300.00258 * 3 2 1 30 30 H 1.09004 * 109.47459 * 305.00281 * 4 3 2 31 31 H 1.08998 * 109.47333 * 185.00127 * 4 3 2 32 32 H 1.08993 * 109.46917 * 60.00386 * 6 5 4 33 33 H 1.08998 * 109.46980 * 300.00302 * 6 5 4 34 34 H 0.96709 * 113.99487 * 299.99974 * 9 7 6 35 35 H 1.09006 * 109.47033 * 65.00159 * 10 7 6 36 36 H 1.08995 * 109.47422 * 304.99894 * 10 7 6 37 37 H 1.08996 * 110.37823 * 265.19398 * 12 11 10 38 38 H 1.09002 * 110.37399 * 27.53914 * 12 11 10 39 39 H 1.08995 * 110.98807 * 81.01940 * 13 12 11 40 40 H 1.08997 * 110.99076 * 204.80412 * 13 12 11 41 41 H 0.96704 * 113.99505 * 293.43296 * 15 14 13 42 42 H 0.97004 * 120.00131 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.88998 * 356.14887 * 24 11 10 44 44 H 1.09003 * 109.88733 * 117.17548 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 8 3.9657 0.5794 -1.2201 6 6 5.3822 0.4199 -1.3221 7 6 5.7267 -0.2337 -2.6618 8 1 5.2957 0.3525 -3.4736 9 8 5.1935 -1.5590 -2.6964 10 6 7.2468 -0.2910 -2.8254 11 7 7.5766 -0.8079 -4.1603 12 6 7.2121 0.1665 -5.2107 13 6 8.2868 -0.0174 -6.3111 14 6 9.5619 -0.2893 -5.4655 15 8 10.1420 0.9377 -5.0183 16 6 10.5625 -1.0991 -6.2490 17 1 10.8027 -2.1058 -5.9405 18 6 11.1712 -0.5547 -7.3600 19 7 10.8790 0.6713 -7.7355 20 14 12.4110 -1.5588 -8.3318 21 1 11.7075 -2.3180 -9.3966 22 1 13.4092 -0.6492 -8.9496 23 1 13.1021 -2.5072 -7.4218 24 6 9.0170 -1.1020 -4.2721 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8463 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 3.8507 0.5686 0.8427 31 1 3.9783 2.1766 0.0902 32 1 5.7361 -0.2119 -0.5075 33 1 5.8631 1.3961 -1.2601 34 1 5.5336 -2.1381 -2.0005 35 1 7.6693 -0.9494 -2.0663 36 1 7.6627 0.7099 -2.7105 37 1 6.2213 -0.0555 -5.6070 38 1 7.2445 1.1815 -4.8144 39 1 8.0528 -0.8715 -6.9465 40 1 8.3969 0.8899 -6.9050 41 1 10.4996 1.4860 -5.7301 42 1 11.3070 1.0541 -8.5173 43 1 9.5284 -0.8046 -3.3565 44 1 9.1653 -2.1671 -4.4502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261458211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:06 Heat of formation + Delta-G solvation = -186.284926 kcal Electronic energy + Delta-G solvation = -23731.398664 eV Core-core repulsion = 20070.167342 eV Total energy + Delta-G solvation = -3661.231322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.177 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.05099 -38.42437 -37.56942 -36.28545 -34.41504 -32.06808 -31.33737 -30.36298 -28.54258 -28.01784 -26.51729 -25.20725 -23.66858 -22.78340 -21.64939 -19.99659 -19.43035 -17.27919 -17.11591 -17.04857 -16.38475 -16.08367 -15.65236 -15.19391 -14.91860 -14.88982 -14.65749 -14.47345 -13.89906 -13.56751 -13.18920 -12.97922 -12.59137 -12.25229 -12.10448 -11.87733 -11.79447 -11.63085 -11.33853 -11.28508 -11.21433 -10.90207 -10.57958 -10.52376 -10.43401 -10.30641 -10.00821 -9.94840 -9.76780 -9.61974 -9.23107 -8.61245 -8.08806 -7.59237 -6.20633 -4.27386 3.23853 3.30773 3.34555 3.38121 3.50918 4.31362 4.50208 4.69083 4.74517 4.89305 4.98038 5.02449 5.06259 5.07308 5.11967 5.20664 5.24542 5.31814 5.39746 5.42516 5.46726 5.52077 5.74812 5.93198 6.03726 6.15720 6.26718 6.32610 6.43574 6.57589 6.85702 6.96335 7.06284 7.09813 7.43737 7.49564 7.67580 7.77139 7.84143 7.97742 8.15345 8.74031 9.40279 9.52067 10.86740 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.046193 B = 0.002656 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.013313 B =10540.521330 C =10632.448757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.368 6.368 6 C 0.030 3.970 7 C 0.118 3.882 8 H 0.103 0.897 9 O -0.538 6.538 10 C 0.024 3.976 11 N -0.518 5.518 12 C 0.040 3.960 13 C -0.131 4.131 14 C 0.236 3.764 15 O -0.594 6.594 16 C -0.530 4.530 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.057 3.943 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.367 0.633 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.384 0.616 42 H 0.267 0.733 43 H 0.044 0.956 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 2.619 14.557 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.287 6.287 6 C -0.047 4.047 7 C 0.058 3.942 8 H 0.121 0.879 9 O -0.342 6.342 10 C -0.105 4.105 11 N -0.242 5.242 12 C -0.087 4.087 13 C -0.170 4.170 14 C 0.196 3.804 15 O -0.404 6.404 16 C -0.569 4.569 17 H 0.081 0.919 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.070 4.070 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.213 0.787 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.235 0.765 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.476 2.076 14.280 21.160 hybrid contribution 1.604 0.756 -0.272 1.794 sum -13.871 2.832 14.009 19.917 Atomic orbital electron populations 1.22742 0.81171 1.02887 0.99746 1.87989 1.19500 1.27204 1.95333 1.22552 0.92475 0.85560 1.00735 1.22513 0.93356 0.97471 0.88239 1.88033 1.21592 1.81815 1.37275 1.23313 0.82060 1.00176 0.99172 1.21855 0.92668 0.84364 0.95285 0.87918 1.86657 1.69525 1.21502 1.56481 1.22849 0.94824 0.99256 0.93584 1.63607 1.18059 1.41247 1.01294 1.23105 0.99398 0.92835 0.93396 1.23209 0.95309 1.01777 0.96701 1.19760 0.89618 0.82465 0.88564 1.86060 1.79917 1.34432 1.39984 1.21605 1.23941 1.00601 1.10711 0.91909 1.25020 0.96430 0.95136 0.96716 1.69588 1.43484 1.14300 1.26655 0.86441 0.80795 0.79889 0.79964 1.20484 1.21140 1.19780 1.22857 0.85255 1.00236 0.98617 0.89551 0.94343 0.93993 0.92007 0.92345 0.92592 0.91936 0.93021 0.92623 0.78715 0.91067 0.93910 0.91856 0.94683 0.91749 0.90974 0.76459 0.92299 0.93726 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.39 10.67 -40.08 -0.43 -4.82 16 3 C 0.06 0.58 6.32 37.16 0.23 0.82 16 4 C 0.06 0.60 6.32 37.16 0.23 0.84 16 5 O -0.37 -4.95 10.27 -49.80 -0.51 -5.47 16 6 C 0.03 0.37 5.57 37.16 0.21 0.57 16 7 C 0.12 1.73 3.28 -26.73 -0.09 1.65 16 8 H 0.10 1.67 7.34 -51.93 -0.38 1.29 16 9 O -0.54 -8.47 13.25 -40.08 -0.53 -9.00 16 10 C 0.02 0.39 4.20 -3.82 -0.02 0.37 16 11 N -0.52 -10.21 5.11 -231.25 -1.18 -11.39 16 12 C 0.04 0.82 5.71 -2.29 -0.01 0.80 16 13 C -0.13 -3.10 5.68 -24.45 -0.14 -3.24 16 14 C 0.24 5.92 0.86 -89.81 -0.08 5.84 16 15 O -0.59 -15.52 13.09 -35.23 -0.46 -15.99 16 16 C -0.53 -14.31 8.22 -34.44 -0.28 -14.60 16 17 H 0.06 1.68 7.53 -52.48 -0.40 1.29 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 19 N -0.90 -24.17 10.72 55.43 0.59 -23.57 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.06 1.27 6.21 -2.84 -0.02 1.25 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.37 4.42 9.05 45.56 0.41 4.83 16 35 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 36 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 37 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 38 H 0.03 0.70 7.62 -51.93 -0.40 0.30 16 39 H 0.06 1.57 8.04 -51.93 -0.42 1.16 16 40 H 0.07 1.78 7.78 -51.93 -0.40 1.38 16 41 H 0.38 10.26 6.99 45.56 0.32 10.58 16 42 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.04 0.96 7.47 -51.93 -0.39 0.57 16 44 H 0.08 1.77 7.63 -51.93 -0.40 1.37 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -30.99 357.68 -7.32 -38.31 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -6.23 Total: 13.35 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 1.06 Total: -2.60 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.59 Total: -34.97 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.93 Total: -35.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.99 -7.32 -38.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261458211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.973 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds