Wall clock time and date at job start Tue Mar 31 2020 03:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42909 * 113.99690 * 2 1 4 4 C 1.52998 * 109.46909 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47194 * 65.00253 * 4 3 2 6 6 C 1.42902 * 114.00249 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47206 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.47019 * 54.99643 * 7 6 5 9 9 O 1.42903 * 109.47159 * 295.00550 * 7 6 5 10 10 C 1.52996 * 109.47190 * 175.00015 * 7 6 5 11 11 N 1.46904 * 109.47327 * 184.99897 * 10 7 6 12 12 C 1.47843 * 110.99640 * 69.15576 * 11 10 7 13 13 C 1.54916 * 104.79337 * 146.36598 * 12 11 10 14 14 C 1.55398 * 101.74107 * 323.02060 * 13 12 11 15 15 O 1.42902 * 110.67651 * 277.17865 * 14 13 12 16 16 C 1.50693 * 110.84773 * 153.86113 * 14 13 12 17 17 H 1.08003 * 120.00166 * 246.46481 * 16 14 13 18 18 C 1.37883 * 119.99850 * 66.46355 * 16 14 13 19 19 N 1.31508 * 119.99898 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99869 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47362 * 90.00177 * 20 18 16 22 22 H 1.48504 * 109.46872 * 209.99961 * 20 18 16 23 23 H 1.48499 * 109.47348 * 329.99947 * 20 18 16 24 24 C 1.47439 * 111.00045 * 190.00285 * 11 10 7 25 25 H 1.09004 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47409 * 299.99901 * 1 2 3 27 27 H 1.09000 * 109.47698 * 60.00021 * 1 2 3 28 28 H 1.09002 * 109.46413 * 60.00425 * 3 2 1 29 29 H 1.08995 * 109.47135 * 300.00258 * 3 2 1 30 30 H 1.09004 * 109.47459 * 305.00281 * 4 3 2 31 31 H 1.08998 * 109.47333 * 185.00127 * 4 3 2 32 32 H 1.08993 * 109.46917 * 60.00386 * 6 5 4 33 33 H 1.08998 * 109.46980 * 300.00302 * 6 5 4 34 34 H 0.96709 * 113.99487 * 299.99974 * 9 7 6 35 35 H 1.09006 * 109.47033 * 65.00159 * 10 7 6 36 36 H 1.08995 * 109.47422 * 304.99894 * 10 7 6 37 37 H 1.08996 * 110.37823 * 265.19398 * 12 11 10 38 38 H 1.09002 * 110.37399 * 27.53914 * 12 11 10 39 39 H 1.08995 * 110.98807 * 81.01940 * 13 12 11 40 40 H 1.08997 * 110.99076 * 204.80412 * 13 12 11 41 41 H 0.96704 * 113.99505 * 293.43296 * 15 14 13 42 42 H 0.97004 * 120.00131 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.88998 * 356.14887 * 24 11 10 44 44 H 1.09003 * 109.88733 * 117.17548 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 8 3.9657 0.5794 -1.2201 6 6 5.3822 0.4199 -1.3221 7 6 5.7267 -0.2337 -2.6618 8 1 5.2957 0.3525 -3.4736 9 8 5.1935 -1.5590 -2.6964 10 6 7.2468 -0.2910 -2.8254 11 7 7.5766 -0.8079 -4.1603 12 6 7.2121 0.1665 -5.2107 13 6 8.2868 -0.0174 -6.3111 14 6 9.5619 -0.2893 -5.4655 15 8 10.1420 0.9377 -5.0183 16 6 10.5625 -1.0991 -6.2490 17 1 10.8027 -2.1058 -5.9405 18 6 11.1712 -0.5547 -7.3600 19 7 10.8790 0.6713 -7.7355 20 14 12.4110 -1.5588 -8.3318 21 1 11.7075 -2.3180 -9.3966 22 1 13.4092 -0.6492 -8.9496 23 1 13.1021 -2.5072 -7.4218 24 6 9.0170 -1.1020 -4.2721 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8463 0.8901 29 1 1.6885 1.8465 -0.8899 30 1 3.8507 0.5686 0.8427 31 1 3.9783 2.1766 0.0902 32 1 5.7361 -0.2119 -0.5075 33 1 5.8631 1.3961 -1.2601 34 1 5.5336 -2.1381 -2.0005 35 1 7.6693 -0.9494 -2.0663 36 1 7.6627 0.7099 -2.7105 37 1 6.2213 -0.0555 -5.6070 38 1 7.2445 1.1815 -4.8144 39 1 8.0528 -0.8715 -6.9465 40 1 8.3969 0.8899 -6.9050 41 1 10.4996 1.4860 -5.7301 42 1 11.3070 1.0541 -8.5173 43 1 9.5284 -0.8046 -3.3565 44 1 9.1653 -2.1671 -4.4502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261458211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:05 Heat of formation + Delta-G solvation = -213.169545 kcal Electronic energy + Delta-G solvation = -23732.564469 eV Core-core repulsion = 20070.167342 eV Total energy + Delta-G solvation = -3662.397127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42921 -39.50623 -38.59296 -37.44555 -36.14773 -34.12781 -32.57927 -31.44087 -30.04499 -29.66990 -27.21952 -26.79467 -25.21833 -23.51530 -22.93077 -21.59419 -21.28801 -19.14318 -18.24173 -17.85278 -17.35830 -17.07462 -16.90699 -16.62151 -16.46987 -16.10706 -15.84582 -15.77866 -15.51751 -14.99373 -14.60585 -13.98018 -13.84865 -13.77270 -13.51526 -13.25852 -13.19181 -12.92509 -12.86046 -12.66026 -12.42150 -12.32354 -12.31798 -12.11203 -12.02062 -11.89298 -11.65070 -11.20442 -10.85550 -10.64223 -10.60766 -10.58086 -10.09660 -9.19398 -8.22681 -6.37208 1.40821 1.42627 1.52347 2.37981 2.47493 2.88334 3.01579 3.19442 3.60560 3.81948 3.92415 4.03680 4.09571 4.17725 4.21606 4.27635 4.36504 4.41360 4.44688 4.48949 4.50661 4.53434 4.57992 4.58829 4.64611 4.74224 4.77931 4.83670 4.87092 5.06645 5.13539 5.26283 5.47908 5.52811 5.79951 5.94538 6.14070 6.18334 6.24238 6.33134 6.67232 6.96991 7.33374 7.42690 8.82888 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.046193 B = 0.002656 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.013313 B =10540.521330 C =10632.448757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.059 3.941 4 C 0.054 3.946 5 O -0.398 6.398 6 C 0.037 3.963 7 C 0.126 3.874 8 H 0.083 0.917 9 O -0.559 6.559 10 C 0.026 3.974 11 N -0.521 5.521 12 C 0.052 3.948 13 C -0.126 4.126 14 C 0.221 3.779 15 O -0.598 6.598 16 C -0.557 4.557 17 H 0.057 0.943 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.962 3.038 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.271 1.271 24 C 0.065 3.935 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.382 0.618 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.378 0.622 42 H 0.270 0.730 43 H 0.048 0.952 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 2.633 15.901 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.022 4.022 5 O -0.318 6.318 6 C -0.040 4.040 7 C 0.066 3.934 8 H 0.101 0.899 9 O -0.365 6.365 10 C -0.103 4.103 11 N -0.245 5.245 12 C -0.076 4.076 13 C -0.165 4.165 14 C 0.181 3.819 15 O -0.408 6.408 16 C -0.595 4.595 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.787 3.213 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.062 4.062 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.230 0.770 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.228 0.772 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.934 2.090 15.650 22.431 hybrid contribution 1.697 0.763 -0.663 1.975 sum -14.237 2.852 14.987 20.867 Atomic orbital electron populations 1.22898 0.79695 1.03614 1.00817 1.87932 1.21340 1.28714 1.95587 1.22721 0.92094 0.85000 1.01911 1.22768 0.93922 0.98493 0.86993 1.87985 1.22085 1.82511 1.39220 1.23192 0.81985 1.00979 0.97885 1.21692 0.91209 0.84111 0.96426 0.89870 1.86613 1.69972 1.22285 1.57647 1.22930 0.96062 0.99462 0.91831 1.63598 1.16277 1.41543 1.03075 1.22978 0.98683 0.93308 0.92598 1.23030 0.96185 1.00125 0.97113 1.19994 0.89720 0.82155 0.90062 1.86049 1.80072 1.34828 1.39836 1.21883 1.25127 1.00792 1.11680 0.92477 1.25726 0.97963 0.96160 0.97478 1.69670 1.43928 1.15161 1.26841 0.85499 0.78663 0.78550 0.78540 1.20163 1.20578 1.19571 1.22704 0.86604 0.99435 0.97485 0.89125 0.92371 0.93772 0.89105 0.92779 0.92073 0.89701 0.91154 0.91254 0.76954 0.89063 0.93999 0.90765 0.94282 0.93281 0.92770 0.77170 0.92097 0.93324 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.10 10.67 -144.34 -1.54 -10.64 16 3 C 0.06 0.97 6.32 71.98 0.45 1.43 16 4 C 0.05 0.95 6.32 71.98 0.45 1.41 16 5 O -0.40 -10.07 10.27 -135.05 -1.39 -11.46 16 6 C 0.04 0.81 5.57 71.98 0.40 1.21 16 7 C 0.13 3.48 3.28 30.59 0.10 3.58 16 8 H 0.08 2.63 7.34 -2.38 -0.02 2.61 16 9 O -0.56 -16.79 13.25 -144.34 -1.91 -18.71 16 10 C 0.03 0.78 4.20 86.30 0.36 1.14 16 11 N -0.52 -20.00 5.11 -885.52 -4.53 -24.53 16 12 C 0.05 2.09 5.71 86.78 0.50 2.59 16 13 C -0.13 -6.01 5.68 32.07 0.18 -5.83 16 14 C 0.22 11.14 0.86 -10.27 -0.01 11.13 16 15 O -0.60 -31.49 13.09 -148.98 -1.95 -33.44 16 16 C -0.56 -30.29 8.22 25.60 0.21 -30.08 16 17 H 0.06 3.09 7.53 -2.91 -0.02 3.06 16 18 C 0.03 1.42 5.29 84.66 0.45 1.87 16 19 N -0.92 -49.51 10.72 21.45 0.23 -49.28 16 20 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C 0.07 2.85 6.21 86.65 0.54 3.39 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.38 8.50 9.05 -74.05 -0.67 7.83 16 35 H 0.09 2.39 8.03 -2.38 -0.02 2.37 16 36 H 0.04 1.30 7.85 -2.39 -0.02 1.28 16 37 H 0.07 2.83 8.12 -2.39 -0.02 2.81 16 38 H 0.04 1.54 7.62 -2.39 -0.02 1.52 16 39 H 0.05 2.44 8.04 -2.39 -0.02 2.42 16 40 H 0.05 2.74 7.78 -2.39 -0.02 2.72 16 41 H 0.38 20.53 6.99 -74.05 -0.52 20.01 16 42 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 43 H 0.05 2.05 7.47 -2.39 -0.02 2.03 16 44 H 0.08 3.34 7.63 -2.39 -0.02 3.32 16 Total: -1.00 -65.74 357.68 -4.37 -70.11 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -0.20 Total: 39.86 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.89 Total: -6.56 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -4.30 Total: -73.80 kcal Atomic # 8 Polarization: -67.45 SS G_CDS: -6.79 Total: -74.24 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -65.74 -4.37 -70.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261458211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.056 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds