Wall clock time and date at job start Tue Mar 31 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34313 * 119.41500 * 2 1 4 4 O 1.21285 * 118.99484 * 2.02275 * 3 2 1 5 5 C 1.50274 * 122.00997 * 182.00588 * 3 2 1 6 6 O 1.42810 * 110.54356 * 341.43135 * 5 3 2 7 7 C 1.43434 * 113.34242 * 51.38603 * 6 5 3 8 8 C 1.45802 * 119.40832 * 180.02562 * 2 1 3 9 9 C 1.52953 * 114.28176 * 297.28597 * 8 2 1 10 10 N 1.47158 * 87.85871 * 88.25078 * 9 8 2 11 11 S 1.65596 * 136.00505 * 206.63410 * 10 9 8 12 12 O 1.42102 * 106.40636 * 162.15713 * 11 10 9 13 13 O 1.42099 * 106.40539 * 29.23327 * 11 10 9 14 14 C 1.76205 * 107.21742 * 275.69457 * 11 10 9 15 15 H 1.08001 * 119.99745 * 0.13491 * 14 11 10 16 16 C 1.37870 * 119.99997 * 179.85772 * 14 11 10 17 17 N 1.31517 * 120.00262 * 0.27379 * 16 14 11 18 18 Si 1.86798 * 120.00135 * 180.27967 * 16 14 11 19 19 H 1.48499 * 109.47476 * 89.99499 * 18 16 14 20 20 H 1.48499 * 109.47484 * 210.00214 * 18 16 14 21 21 H 1.48502 * 109.47066 * 329.99736 * 18 16 14 22 22 C 1.47166 * 87.99299 * 26.88133 * 10 9 8 23 23 H 1.09001 * 109.47487 * 265.40020 * 1 2 3 24 24 H 1.09006 * 109.47074 * 25.40272 * 1 2 3 25 25 H 1.08996 * 109.47164 * 145.40045 * 1 2 3 26 26 H 1.08998 * 109.26870 * 101.71015 * 5 3 2 27 27 H 1.09004 * 109.26257 * 221.16024 * 5 3 2 28 28 H 1.08995 * 109.70229 * 174.90274 * 7 6 5 29 29 H 1.08996 * 109.71967 * 54.27252 * 7 6 5 30 30 H 1.09003 * 113.49077 * 333.49943 * 9 8 2 31 31 H 1.09005 * 113.49303 * 202.99846 * 9 8 2 32 32 H 0.97003 * 119.99858 * 180.02562 * 17 16 14 33 33 H 1.09007 * 113.48624 * 87.86120 * 22 10 9 34 34 H 1.09006 * 113.49210 * 218.36510 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1246 1.1700 0.0000 4 8 1.4898 2.2028 0.0374 5 6 3.6251 1.2384 -0.0446 6 8 4.1955 -0.0123 0.3426 7 6 3.6542 -1.1302 -0.3747 8 6 2.1809 -1.2701 -0.0006 9 6 1.9329 -2.1325 1.2381 10 7 0.7764 -2.7111 0.5359 11 16 -0.6600 -3.4064 0.9781 12 8 -1.4942 -3.3702 -0.1718 13 8 -1.0235 -2.8210 2.2208 14 6 -0.3372 -5.1075 1.3050 15 1 0.6646 -5.4970 1.1996 16 6 -1.3624 -5.9400 1.7009 17 7 -2.5824 -5.4657 1.8293 18 14 -1.0188 -7.7416 2.0550 19 1 -0.6650 -7.9058 3.4879 20 1 -2.2289 -8.5460 1.7486 21 1 0.1108 -8.2055 1.2100 22 6 1.4592 -2.4065 -0.7317 23 1 -0.3634 -0.0824 1.0243 24 1 -0.3633 0.9284 -0.4409 25 1 -0.3633 -0.8459 -0.5835 26 1 3.9442 1.4807 -1.0583 27 1 3.9700 2.0169 0.6360 28 1 4.1911 -2.0380 -0.0998 29 1 3.7462 -0.9585 -1.4471 30 1 1.6605 -1.5554 2.1218 31 1 2.7279 -2.8525 1.4326 32 1 -3.3036 -6.0515 2.1081 33 1 2.1268 -3.2002 -1.0672 34 1 0.7855 -2.0615 -1.5161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275494665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:02 Heat of formation + Delta-G solvation = -142.618993 kcal Electronic energy + Delta-G solvation = -22410.174945 eV Core-core repulsion = 18856.497890 eV Total energy + Delta-G solvation = -3553.677054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.081 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.39323 -39.99784 -38.43255 -37.46294 -36.23014 -35.41234 -35.21807 -31.11334 -29.90732 -28.32820 -27.37970 -26.82754 -25.61213 -22.98292 -20.81179 -19.66701 -19.19495 -18.61781 -18.37826 -17.70336 -17.24275 -17.02597 -16.55760 -16.35628 -15.96775 -15.77106 -15.51283 -14.95468 -14.71520 -14.53472 -14.24230 -14.03115 -13.50645 -13.40279 -13.27368 -13.04406 -13.01893 -12.65066 -12.59030 -12.53758 -12.31740 -12.10391 -11.92641 -11.46733 -11.28964 -11.06605 -10.53540 -10.01347 -9.83843 -8.78579 -7.54179 0.16157 1.30036 1.32047 1.33081 1.49454 1.64246 2.17136 2.53129 2.64576 2.75941 3.17952 3.33154 3.59218 3.64118 3.80774 3.95654 4.07555 4.24969 4.28401 4.48169 4.51335 4.57961 4.58481 4.66833 4.70941 4.77103 4.83378 5.08325 5.20032 5.35807 5.52826 5.81553 5.89638 6.27637 6.73451 6.85303 8.16341 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.032990 B = 0.005206 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.541307 B = 5377.515689 C = 5861.672221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.581 5.581 3 C 0.481 3.519 4 O -0.584 6.584 5 C 0.061 3.939 6 O -0.370 6.370 7 C 0.073 3.927 8 C 0.099 3.901 9 C 0.116 3.884 10 N -1.058 6.058 11 S 2.737 3.263 12 O -1.036 7.036 13 O -1.043 7.043 14 C -1.043 5.043 15 H 0.125 0.875 16 C 0.065 3.935 17 N -0.898 5.898 18 Si 0.994 3.006 19 H -0.255 1.255 20 H -0.264 1.264 21 H -0.242 1.242 22 C 0.121 3.879 23 H 0.033 0.967 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.160 0.840 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.134 0.866 32 H 0.299 0.701 33 H 0.142 0.858 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.801 4.572 -6.519 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.312 5.312 3 C 0.272 3.728 4 O -0.464 6.464 5 C -0.018 4.018 6 O -0.287 6.287 7 C -0.004 4.004 8 C 0.010 3.990 9 C -0.011 4.011 10 N -0.897 5.897 11 S 2.842 3.158 12 O -1.026 7.026 13 O -1.033 7.033 14 C -1.177 5.177 15 H 0.143 0.857 16 C -0.147 4.147 17 N -0.530 5.530 18 Si 0.812 3.188 19 H -0.179 1.179 20 H -0.188 1.188 21 H -0.165 1.165 22 C -0.004 4.004 23 H 0.052 0.948 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.142 0.858 27 H 0.162 0.838 28 H 0.177 0.823 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.109 0.891 33 H 0.159 0.841 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.362 5.477 -6.199 18.334 hybrid contribution -1.070 -1.188 0.447 1.660 sum 15.291 4.289 -5.752 16.891 Atomic orbital electron populations 1.21622 0.80666 1.03181 1.01082 1.47243 1.06370 1.05960 1.71662 1.22190 0.93588 0.82180 0.74877 1.90715 1.69904 1.34014 1.51793 1.22847 0.84161 0.88798 1.06024 1.88202 1.62016 1.14502 1.63985 1.23227 0.86389 0.92064 0.98740 1.22496 0.95229 0.83232 0.98031 1.23186 0.87380 0.94727 0.95757 1.60318 1.33834 1.77453 1.18067 0.99358 0.70054 0.75146 0.71267 1.93300 1.66048 1.89531 1.53736 1.93305 1.82027 1.80905 1.47076 1.31051 1.04710 1.20346 1.61547 0.85743 1.26132 0.92702 1.07307 0.88602 1.70001 1.02349 1.41040 1.39594 0.85073 0.79786 0.73839 0.80124 1.17949 1.18841 1.16463 1.23095 0.94702 0.95754 0.86895 0.94802 0.89839 0.91332 0.85804 0.83835 0.82291 0.87865 0.92561 0.84811 0.89089 0.84054 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.78 9.39 127.77 1.20 3.98 16 2 N -0.58 -16.74 3.08 -804.53 -2.48 -19.22 16 3 C 0.48 12.94 7.64 87.60 0.67 13.61 16 4 O -0.58 -20.37 16.42 -3.05 -0.05 -20.42 16 5 C 0.06 0.95 6.93 71.10 0.49 1.45 16 6 O -0.37 -5.64 10.84 -148.98 -1.62 -7.25 16 7 C 0.07 0.85 6.14 71.87 0.44 1.30 16 8 C 0.10 2.23 1.68 3.91 0.01 2.24 16 9 C 0.12 3.26 7.96 83.30 0.66 3.92 16 10 N -1.06 -39.59 2.99 -549.45 -1.64 -41.24 16 11 S 2.74 147.24 5.55 -56.49 -0.31 146.92 16 12 O -1.04 -61.44 18.00 -128.00 -2.30 -63.75 16 13 O -1.04 -63.90 18.02 -128.00 -2.31 -66.20 16 14 C -1.04 -56.56 9.75 67.73 0.66 -55.90 16 15 H 0.12 5.91 7.81 -2.91 -0.02 5.89 16 16 C 0.07 3.60 5.46 84.65 0.46 4.06 16 17 N -0.90 -54.01 13.19 21.45 0.28 -53.73 16 18 Si 0.99 40.46 29.54 68.60 2.03 42.49 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16 22 C 0.12 3.06 7.33 83.38 0.61 3.67 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 2.87 7.22 -2.38 -0.02 2.85 16 25 H 0.07 2.55 5.78 -2.39 -0.01 2.53 16 26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.16 0.84 7.84 -2.39 -0.02 0.82 16 29 H 0.10 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.13 2.62 7.89 -2.38 -0.02 2.60 16 32 H 0.30 16.13 8.31 -92.71 -0.77 15.36 16 33 H 0.14 2.27 8.09 -2.38 -0.02 2.25 16 34 H 0.08 2.06 7.01 -2.38 -0.02 2.04 16 Total: -1.00 -87.64 301.88 -2.07 -89.71 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.13 Total: 14.38 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 5.21 Total: -21.69 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -3.84 Total: -114.18 kcal Atomic # 8 Polarization: -151.35 SS G_CDS: -6.28 Total: -157.62 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Atomic # 16 Polarization: 147.24 SS G_CDS: -0.31 Total: 146.92 kcal Total: -87.64 -2.07 -89.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275494665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.913 kcal (2) G-P(sol) polarization free energy of solvation -87.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds