Wall clock time and date at job start Tue Mar 31 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34410 * 119.79084 * 2 1 4 4 O 1.21850 * 118.47883 * 0.02562 * 3 2 1 5 5 N 1.33385 * 123.04486 * 180.02562 * 3 2 1 6 6 C 1.32215 * 121.59869 * 359.96152 * 5 3 2 7 7 O 1.34912 * 120.81003 * 180.02562 * 6 5 3 8 8 C 1.46755 * 118.38152 * 0.03696 * 6 5 3 9 9 C 1.39353 * 121.96817 * 179.97438 * 8 6 5 10 10 C 1.39869 * 117.75581 * 180.02562 * 9 8 6 11 11 C 1.47575 * 120.40584 * 179.97438 * 10 9 8 12 12 O 1.21616 * 120.00315 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99761 * 180.02562 * 11 10 9 14 14 C 1.36903 * 120.00069 * 180.02562 * 13 11 10 15 15 H 1.08007 * 119.99739 * 359.97438 * 14 13 11 16 16 C 1.39027 * 120.00238 * 180.02562 * 14 13 11 17 17 N 1.31381 * 119.99756 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99766 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47110 * 90.00485 * 18 16 14 20 20 H 1.48505 * 109.46909 * 210.00293 * 18 16 14 21 21 H 1.48500 * 109.47177 * 330.00169 * 18 16 14 22 22 C 1.40065 * 119.18371 * 359.97438 * 10 9 8 23 23 N 1.31494 * 121.39756 * 0.27992 * 22 10 9 24 24 C 1.32481 * 121.70640 * 359.42632 * 23 22 10 25 25 H 1.09001 * 109.47120 * 269.97761 * 1 2 3 26 26 H 1.08991 * 109.47443 * 29.97728 * 1 2 3 27 27 H 1.09006 * 109.46607 * 149.97942 * 1 2 3 28 28 H 0.96706 * 113.99635 * 0.03952 * 7 6 5 29 29 H 1.08000 * 121.12168 * 0.07074 * 9 8 6 30 30 H 0.96998 * 120.00591 * 0.02562 * 13 11 10 31 31 H 0.97005 * 119.99556 * 179.97438 * 17 16 14 32 32 H 1.08002 * 119.29685 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1328 1.1665 0.0000 4 8 1.4920 2.2028 0.0005 5 7 3.4645 1.2422 -0.0005 6 6 4.2201 0.1572 -0.0003 7 8 5.5659 0.2523 -0.0003 8 6 3.5592 -1.1531 -0.0003 9 6 4.2825 -2.3442 -0.0006 10 6 3.5625 -3.5434 -0.0011 11 6 4.2693 -4.8389 -0.0021 12 8 5.4851 -4.8684 -0.0019 13 7 3.5674 -5.9895 -0.0031 14 6 4.2230 -7.1913 -0.0034 15 1 5.3028 -7.2174 -0.0032 16 6 3.4990 -8.3782 -0.0050 17 7 4.1282 -9.5315 -0.0058 18 14 1.6315 -8.3330 -0.0060 19 1 1.1375 -8.3197 -1.4064 20 1 1.1070 -9.5339 0.6926 21 1 1.1656 -7.1095 0.6950 22 6 2.1626 -3.4996 -0.0008 23 7 1.5130 -2.3563 -0.0055 24 6 2.1490 -1.1941 0.0006 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8899 -0.5142 28 1 5.8959 1.1613 0.0002 29 1 5.3624 -2.3415 0.0003 30 1 2.5977 -5.9661 -0.0036 31 1 3.6230 -10.3596 -0.0066 32 1 1.6048 -4.4244 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322219977.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:18 Heat of formation + Delta-G solvation = -54.829834 kcal Electronic energy + Delta-G solvation = -22188.842425 eV Core-core repulsion = 18535.820994 eV Total energy + Delta-G solvation = -3653.021431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19110 -41.15103 -40.02116 -39.76059 -37.12475 -36.25151 -35.95970 -33.94496 -33.74514 -31.96779 -28.64884 -27.43761 -26.53707 -25.30706 -23.79580 -22.42730 -21.28115 -20.89800 -20.47495 -18.99500 -18.03793 -17.95529 -17.40154 -17.22537 -16.76027 -16.66281 -15.90831 -15.76928 -15.66863 -15.43869 -15.05329 -14.78308 -14.64988 -14.38655 -14.11838 -14.10357 -13.41186 -13.01603 -12.45227 -12.28630 -11.99429 -11.91995 -11.86166 -11.65345 -11.55565 -11.13920 -10.91744 -10.61853 -10.34681 -9.75435 -8.47074 -6.05092 -1.09163 -0.68583 0.30923 1.04723 1.31189 1.35704 1.46619 1.55221 1.64369 2.21309 2.22932 2.55170 2.57850 2.63613 2.81861 3.19332 3.36701 3.47063 3.53270 3.76147 4.06665 4.13237 4.31123 4.42966 4.66088 4.75144 4.79334 4.97991 5.09133 5.46610 5.88509 5.97037 6.24927 6.44430 6.47132 6.77096 6.77943 7.25151 7.78373 8.68558 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.004303 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.222537 B = 6506.034454 C = 7574.111629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.533 5.533 3 C 0.672 3.328 4 O -0.556 6.556 5 N -0.625 5.625 6 C 0.510 3.490 7 O -0.417 6.417 8 C -0.232 4.232 9 C 0.083 3.917 10 C -0.203 4.203 11 C 0.491 3.509 12 O -0.617 6.617 13 N -0.563 5.563 14 C -0.328 4.328 15 H 0.066 0.934 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.950 3.050 19 H -0.252 1.252 20 H -0.274 1.274 21 H -0.222 1.222 22 C 0.220 3.780 23 N -0.504 5.504 24 C 0.412 3.588 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.446 0.554 29 H 0.171 0.829 30 H 0.390 0.610 31 H 0.283 0.717 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 15.703 -0.026 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.257 5.257 3 C 0.374 3.626 4 O -0.432 6.432 5 N -0.382 5.382 6 C 0.301 3.699 7 O -0.213 6.213 8 C -0.240 4.240 9 C 0.055 3.945 10 C -0.210 4.210 11 C 0.280 3.720 12 O -0.503 6.503 13 N -0.202 5.202 14 C -0.457 4.457 15 H 0.084 0.916 16 C -0.207 4.207 17 N -0.556 5.556 18 Si 0.769 3.231 19 H -0.176 1.176 20 H -0.199 1.199 21 H -0.145 1.145 22 C 0.057 3.943 23 N -0.219 5.219 24 C 0.176 3.824 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.309 0.691 29 H 0.189 0.811 30 H 0.227 0.773 31 H 0.093 0.907 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.491 16.453 -0.033 18.515 hybrid contribution 0.191 -0.757 0.027 0.781 sum -8.300 15.696 -0.007 17.755 Atomic orbital electron populations 1.22160 0.74094 1.05566 1.04827 1.46022 1.11312 1.03603 1.64735 1.17165 0.84789 0.82670 0.78025 1.90931 1.66159 1.32108 1.53957 1.69491 1.04884 1.29025 1.34785 1.21441 0.85211 0.87224 0.76014 1.84952 1.12808 1.39561 1.84014 1.19240 0.92096 0.93183 1.19529 1.21737 1.02059 0.88035 0.82629 1.20835 0.95243 0.94144 1.10746 1.17735 0.86934 0.83485 0.83836 1.90665 1.15080 1.87362 1.57238 1.41886 1.08421 1.04999 1.64875 1.19075 0.93594 0.82750 1.50259 0.91567 1.26134 1.05561 0.93571 0.95419 1.69762 1.39354 0.98666 1.47790 0.85586 0.76201 0.80811 0.80528 1.17575 1.19857 1.14452 1.23425 0.90171 0.95877 0.84858 1.67337 1.38559 0.96083 1.19890 1.18477 0.86680 0.87444 0.89839 0.89810 0.89156 0.87392 0.69147 0.81126 0.77339 0.90674 0.78678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 10.14 127.77 1.30 2.67 16 2 N -0.53 -12.91 3.03 -678.88 -2.06 -14.96 16 3 C 0.67 19.31 8.30 179.60 1.49 20.80 16 4 O -0.56 -19.02 16.59 -4.83 -0.08 -19.11 16 5 N -0.63 -15.86 10.35 -434.15 -4.49 -20.35 16 6 C 0.51 10.53 8.12 86.86 0.71 11.24 16 7 O -0.42 -5.73 13.07 -81.81 -1.07 -6.80 16 8 C -0.23 -5.41 5.88 -20.09 -0.12 -5.53 16 9 C 0.08 2.15 9.33 22.93 0.21 2.36 16 10 C -0.20 -5.90 5.89 -19.98 -0.12 -6.02 16 11 C 0.49 20.04 7.72 86.71 0.67 20.71 16 12 O -0.62 -30.96 15.98 -4.08 -0.07 -31.02 16 13 N -0.56 -23.55 5.04 -309.84 -1.56 -25.11 16 14 C -0.33 -17.38 10.16 84.09 0.85 -16.53 16 15 H 0.07 4.22 7.38 -2.91 -0.02 4.19 16 16 C -0.01 -0.28 5.50 84.95 0.47 0.18 16 17 N -0.92 -50.91 13.96 21.68 0.30 -50.61 16 18 Si 0.95 33.79 27.74 68.60 1.90 35.70 16 19 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 20 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.22 -6.20 6.52 99.48 0.65 -5.55 16 22 C 0.22 5.11 10.69 85.19 0.91 6.02 16 23 N -0.50 -11.41 9.21 -191.40 -1.76 -13.17 16 24 C 0.41 9.85 7.37 133.99 0.99 10.84 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.69 7.33 -2.39 -0.02 1.67 16 27 H 0.11 1.68 7.41 -2.38 -0.02 1.66 16 28 H 0.45 1.95 8.99 -74.05 -0.67 1.28 16 29 H 0.17 4.36 7.51 -2.91 -0.02 4.34 16 30 H 0.39 12.93 3.79 -92.71 -0.35 12.58 16 31 H 0.28 14.34 8.31 -92.70 -0.77 13.57 16 32 H 0.20 3.54 6.38 -2.91 -0.02 3.53 16 Total: -1.00 -75.63 290.04 -1.36 -76.99 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.16 Total: 21.70 kcal Atomic # 6 Polarization: 39.39 SS G_CDS: 7.36 Total: 46.75 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -9.57 Total: -124.21 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -1.21 Total: -56.93 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 1.90 Total: 35.70 kcal Total: -75.63 -1.36 -76.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322219977.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.160 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds