Wall clock time and date at job start Tue Mar 31 2020 03:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99884 * 2 1 4 4 S 1.65605 * 120.00050 * 179.97438 * 2 1 3 5 5 O 1.42103 * 106.40178 * 336.46331 * 4 2 1 6 6 O 1.42100 * 106.40213 * 203.54041 * 4 2 1 7 7 N 1.65599 * 107.21692 * 90.00134 * 4 2 1 8 8 C 1.36935 * 120.00310 * 270.00419 * 7 4 2 9 9 H 1.08004 * 119.99730 * 328.84713 * 8 7 4 10 10 C 1.38811 * 120.00493 * 148.85185 * 8 7 4 11 11 N 1.31623 * 119.99705 * 337.32352 * 10 8 7 12 12 Si 1.86801 * 120.00073 * 157.32686 * 10 8 7 13 13 H 1.48498 * 109.47046 * 89.99878 * 12 10 8 14 14 H 1.48501 * 109.46926 * 209.99354 * 12 10 8 15 15 H 1.48491 * 109.47270 * 329.99892 * 12 10 8 16 16 C 1.46507 * 119.99989 * 89.99671 * 7 4 2 17 17 C 1.50702 * 109.46546 * 112.25721 * 16 7 4 18 18 N 1.33324 * 126.54670 * 89.98547 * 17 16 7 19 19 N 1.28991 * 107.35256 * 179.97438 * 18 17 16 20 20 N 1.28781 * 108.72815 * 359.97438 * 19 18 17 21 21 C 1.46505 * 125.44885 * 179.97438 * 20 19 18 22 22 N 1.28880 * 109.10292 * 0.22915 * 20 19 18 23 23 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47335 * 299.99845 * 1 2 3 25 25 H 1.09000 * 109.47030 * 60.00113 * 1 2 3 26 26 H 1.08997 * 109.47465 * 270.00133 * 3 2 1 27 27 H 1.09002 * 109.46787 * 30.00190 * 3 2 1 28 28 H 1.09007 * 109.46782 * 149.99790 * 3 2 1 29 29 H 0.96995 * 119.99680 * 180.02562 * 11 10 8 30 30 H 1.08996 * 109.46799 * 352.26726 * 16 7 4 31 31 H 1.08996 * 109.47309 * 232.25622 * 16 7 4 32 32 H 1.09002 * 109.47068 * 90.02655 * 21 20 19 33 33 H 1.09004 * 109.47121 * 210.02600 * 21 20 19 34 34 H 1.08999 * 109.47223 * 330.02517 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4342 0.0006 5 8 1.4113 -2.4063 0.5455 6 8 3.5760 -1.1566 0.5450 7 7 2.5382 -1.8593 -1.5810 8 6 1.6125 -2.6280 -2.2347 9 1 1.0293 -3.3535 -1.6870 10 6 1.4237 -2.4749 -3.6014 11 7 1.7655 -1.3488 -4.1908 12 14 0.6846 -3.8671 -4.6039 13 1 -0.7931 -3.7242 -4.6352 14 1 1.2162 -3.8157 -5.9896 15 1 1.0431 -5.1680 -3.9841 16 6 3.7454 -1.4130 -2.2809 17 6 4.6232 -2.6018 -2.5761 18 7 4.5896 -3.3609 -3.6716 19 7 5.4960 -4.2690 -3.5384 20 7 6.0870 -4.1004 -2.4067 21 6 7.1764 -4.9296 -1.8851 22 7 5.5631 -3.0889 -1.8038 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.3792 1.5835 -1.0276 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 1.6333 -1.2417 -5.1457 30 1 4.2890 -0.7069 -1.6532 31 1 3.4649 -0.9273 -3.2155 32 1 8.1328 -4.5166 -2.2059 33 1 7.1334 -4.9431 -0.7960 34 1 7.0736 -5.9459 -2.2655 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343482639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:03 Heat of formation + Delta-G solvation = 50.269526 kcal Electronic energy + Delta-G solvation = -22602.245605 eV Core-core repulsion = 19121.518327 eV Total energy + Delta-G solvation = -3480.727278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.095 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.13789 -38.07190 -37.85280 -36.73216 -36.53948 -35.77375 -34.18989 -33.09747 -29.92620 -28.79356 -28.17234 -25.94466 -25.17748 -23.85522 -23.07008 -20.28377 -19.24015 -18.82181 -18.40760 -18.12982 -17.90620 -16.90674 -16.48814 -15.81180 -15.37595 -15.34033 -15.02245 -14.87469 -14.20890 -14.07238 -13.79986 -13.61442 -13.37640 -13.26322 -13.16130 -13.07342 -12.95588 -12.67857 -12.61541 -12.40942 -12.27646 -12.27162 -12.04363 -11.83511 -11.73568 -11.14951 -10.93561 -9.84282 -9.69123 -8.22629 -5.94368 -0.06657 0.34654 1.28789 1.33498 1.44386 1.52696 1.58559 2.23695 2.53529 2.88991 3.02827 3.21589 3.51036 3.71313 4.11478 4.16484 4.27399 4.46669 4.54981 4.60934 4.67951 4.72722 4.84857 4.98381 5.01013 5.03817 5.11384 5.23272 5.33919 5.42628 5.68614 5.93097 6.47775 6.98958 7.39753 7.52472 8.75696 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.009046 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.344815 B = 3094.619818 C = 4337.244334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.021 6.021 3 C 0.085 3.915 4 S 2.719 3.281 5 O -1.024 7.024 6 O -1.020 7.020 7 N -0.834 5.834 8 C -0.315 4.315 9 H 0.081 0.919 10 C 0.045 3.955 11 N -0.849 5.849 12 Si 0.952 3.048 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.285 1.285 16 C 0.211 3.789 17 C 0.175 3.825 18 N -0.288 5.288 19 N -0.092 5.092 20 N -0.138 5.138 21 C 0.080 3.920 22 N -0.322 5.322 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.275 0.725 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.081 1.222 2.668 6.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.860 5.860 3 C -0.060 4.060 4 S 2.738 3.262 5 O -1.009 7.009 6 O -1.005 7.005 7 N -0.664 5.664 8 C -0.454 4.454 9 H 0.098 0.902 10 C -0.166 4.166 11 N -0.486 5.486 12 Si 0.778 3.222 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.211 1.211 16 C 0.081 3.919 17 C -0.110 4.110 18 N -0.158 5.158 19 N -0.086 5.086 20 N -0.052 5.052 21 C -0.058 4.058 22 N -0.175 5.175 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.655 0.398 3.127 7.363 hybrid contribution -0.672 -0.211 -0.526 0.879 sum 5.983 0.186 2.601 6.526 Atomic orbital electron populations 1.21434 0.78725 1.02520 1.02222 1.58138 1.15513 1.22412 1.89918 1.21574 0.96817 0.85422 1.02191 1.05347 0.72046 0.73337 0.75420 1.93388 1.67507 1.60856 1.79106 1.93413 1.42026 1.85717 1.79298 1.53322 1.23348 1.59201 1.30562 1.19122 1.19187 1.14456 0.92615 0.90158 1.25602 0.95976 0.97180 0.97834 1.69761 1.43755 1.23050 1.12040 0.85573 0.78501 0.79717 0.78428 1.19248 1.19997 1.21108 1.19673 0.81592 0.88289 1.02387 1.26276 0.95538 1.01157 0.88027 1.75810 1.13566 1.02967 1.23497 1.78775 1.05296 1.19632 1.04850 1.50581 1.25453 1.18829 1.10346 1.22961 0.84952 0.94829 1.03014 1.74747 1.13742 1.03832 1.25184 0.92149 0.90765 0.91876 0.92710 0.88941 0.91294 0.91508 0.88946 0.85365 0.85444 0.86139 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.27 10.67 127.77 1.36 4.63 16 2 N -1.02 -38.98 3.64 -562.68 -2.05 -41.03 16 3 C 0.09 2.60 10.70 127.77 1.37 3.97 16 4 S 2.72 127.31 6.04 -56.49 -0.34 126.97 16 5 O -1.02 -53.66 15.57 -128.00 -1.99 -55.65 16 6 O -1.02 -49.04 15.40 -128.00 -1.97 -51.01 16 7 N -0.83 -40.99 3.01 -347.17 -1.05 -42.03 16 8 C -0.32 -16.54 8.85 84.03 0.74 -15.80 16 9 H 0.08 4.45 7.36 -2.91 -0.02 4.43 16 10 C 0.04 2.24 5.06 84.86 0.43 2.66 16 11 N -0.85 -42.00 11.08 21.65 0.24 -41.76 16 12 Si 0.95 42.63 29.61 68.60 2.03 44.66 16 13 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 16 C 0.21 9.75 5.75 85.63 0.49 10.25 16 17 C 0.17 8.08 7.56 138.55 1.05 9.12 16 18 N -0.29 -13.45 12.50 -51.26 -0.64 -14.09 16 19 N -0.09 -3.68 13.25 37.02 0.49 -3.19 16 20 N -0.14 -4.73 4.40 -206.71 -0.91 -5.64 16 21 C 0.08 1.42 11.63 127.77 1.49 2.90 16 22 N -0.32 -13.44 12.13 -51.20 -0.62 -14.06 16 23 H 0.06 2.29 6.91 -2.39 -0.02 2.27 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 2.18 8.07 -2.39 -0.02 2.16 16 28 H 0.07 2.14 7.02 -2.38 -0.02 2.13 16 29 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 30 H 0.09 3.93 7.07 -2.39 -0.02 3.91 16 31 H 0.13 6.16 5.49 -2.39 -0.01 6.15 16 32 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -71.27 307.27 1.25 -70.02 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.13 Total: 9.07 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.93 Total: 17.74 kcal Atomic # 7 Polarization: -157.26 SS G_CDS: -4.54 Total: -161.80 kcal Atomic # 8 Polarization: -102.69 SS G_CDS: -3.96 Total: -106.66 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 127.31 SS G_CDS: -0.34 Total: 126.97 kcal Total: -71.27 1.25 -70.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343482639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.285 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds