Wall clock time and date at job start Tue Mar 31 2020 03:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99779 * 2 1 4 4 H 1.48497 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46984 * 299.99908 * 3 2 1 6 6 H 1.48506 * 109.46909 * 59.99574 * 3 2 1 7 7 C 1.38948 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00167 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99844 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00141 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00100 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.47607 * 179.97438 * 12 10 9 14 14 C 1.35872 * 119.42086 * 90.00057 * 13 12 10 15 15 C 1.35054 * 120.95248 * 179.97438 * 14 13 12 16 16 C 1.41251 * 119.78916 * 0.02562 * 15 14 13 17 17 C 1.48295 * 120.54670 * 179.97438 * 16 15 14 18 18 N 1.34103 * 126.68895 * 359.67840 * 17 16 15 19 19 N 1.28990 * 107.26460 * 179.89626 * 18 17 16 20 20 N 1.28725 * 108.96161 * 0.37632 * 19 18 17 21 21 H 0.96998 * 125.32859 * 179.75859 * 20 19 18 22 22 N 1.28877 * 109.33691 * 359.76185 * 20 19 18 23 23 C 1.38576 * 118.89889 * 359.97438 * 16 15 14 24 24 C 1.34572 * 119.42881 * 269.98838 * 13 12 10 25 25 O 1.22090 * 119.92355 * 0.02562 * 24 13 12 26 26 H 0.97001 * 120.00221 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00100 * 359.97438 * 9 7 2 28 28 H 1.09007 * 109.47096 * 60.00555 * 12 10 9 29 29 H 1.09002 * 109.47550 * 300.00501 * 12 10 9 30 30 H 1.08002 * 119.52339 * 0.25732 * 14 13 12 31 31 H 1.08001 * 120.10052 * 179.97438 * 15 14 13 32 32 H 1.08008 * 120.46951 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8892 2.3966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0011 13 7 2.1960 -5.9764 0.0004 14 6 2.6306 -6.4837 1.1835 15 6 3.5076 -7.5102 1.2190 16 6 3.9838 -8.0683 0.0119 17 6 4.9474 -9.1954 0.0312 18 7 5.4640 -9.7893 1.1169 19 7 6.2543 -10.7213 0.7038 20 7 6.2574 -10.7270 -0.5834 21 1 6.7733 -11.3307 -1.1404 22 7 5.4677 -9.8050 -1.0162 23 6 3.5356 -7.5452 -1.1905 24 6 2.6246 -6.4791 -1.1720 25 8 2.2195 -6.0059 -2.2221 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 0.0005 28 1 0.6171 -4.9209 -0.8887 29 1 0.6176 -4.9205 0.8913 30 1 2.2661 -6.0630 2.1090 31 1 3.8442 -7.9025 2.1672 32 1 3.8828 -7.9528 -2.1285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:51 Heat of formation + Delta-G solvation = 67.092386 kcal Electronic energy + Delta-G solvation = -21712.067890 eV Core-core repulsion = 18096.626155 eV Total energy + Delta-G solvation = -3615.441736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.55476 -42.44700 -39.94945 -38.11481 -36.51511 -35.91270 -35.25702 -33.67774 -33.29209 -30.99969 -29.77812 -27.09570 -26.03793 -25.51437 -24.32408 -22.91392 -21.43298 -20.33058 -20.08645 -18.42697 -18.26706 -18.23480 -18.16507 -17.57369 -16.74672 -16.17851 -16.04780 -15.76854 -15.64371 -15.12094 -15.05231 -14.42105 -13.98277 -13.55924 -13.44380 -13.31960 -13.24530 -12.98102 -12.78766 -12.54768 -12.45068 -12.35864 -12.22361 -12.13271 -11.57049 -11.23500 -10.87998 -10.33753 -10.07741 -9.01786 -8.50747 -6.00078 -0.72180 0.07199 0.68317 1.23887 1.33027 1.34418 1.41798 1.53345 1.59206 1.92570 2.28270 2.47096 2.60986 3.01434 3.14126 3.17934 3.70667 3.78678 4.00317 4.08687 4.16433 4.28506 4.29242 4.36485 4.45790 4.79088 5.00468 5.18887 5.38306 5.48213 5.55127 5.92476 6.04818 6.50809 6.92356 7.01882 7.06502 7.45369 7.99549 8.66008 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.035291 B = 0.003134 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.202768 B = 8933.355321 C = 9095.423290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.992 3.008 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.559 5.559 10 C 0.424 3.576 11 O -0.628 6.628 12 C 0.085 3.915 13 N -0.469 5.469 14 C 0.160 3.840 15 C -0.209 4.209 16 C 0.101 3.899 17 C 0.198 3.802 18 N -0.270 5.270 19 N -0.049 5.049 20 N -0.196 5.196 21 H 0.497 0.503 22 N -0.285 5.285 23 C -0.221 4.221 24 C 0.507 3.493 25 O -0.599 6.599 26 H 0.280 0.720 27 H 0.401 0.599 28 H 0.117 0.883 29 H 0.167 0.833 30 H 0.210 0.790 31 H 0.184 0.816 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.981 -20.323 4.332 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.196 5.196 10 C 0.211 3.789 11 O -0.515 6.515 12 C -0.040 4.040 13 N -0.177 5.177 14 C 0.033 3.967 15 C -0.232 4.232 16 C 0.094 3.906 17 C -0.081 4.081 18 N -0.142 5.142 19 N -0.044 5.044 20 N -0.047 5.047 21 H 0.356 0.644 22 N -0.138 5.138 23 C -0.247 4.247 24 C 0.311 3.689 25 O -0.486 6.486 26 H 0.089 0.911 27 H 0.235 0.765 28 H 0.135 0.865 29 H 0.184 0.816 30 H 0.227 0.773 31 H 0.201 0.799 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.743 -20.299 3.972 21.466 hybrid contribution 0.046 0.929 -0.982 1.353 sum 5.789 -19.370 2.990 20.437 Atomic orbital electron populations 1.69656 1.06730 1.29499 1.49500 1.26021 0.96548 1.02339 0.95911 0.84892 0.77984 0.77128 0.78461 1.19993 1.19825 1.19060 1.19662 0.92657 0.83825 1.50291 0.90456 1.41808 1.09540 1.04401 1.63819 1.20839 0.88338 0.86309 0.83453 1.90544 1.15766 1.87795 1.57425 1.21825 0.91007 0.82375 1.08775 1.45161 1.37253 1.27804 1.07455 1.22578 0.92550 0.91790 0.89791 1.20776 1.03032 1.00688 0.98695 1.17847 0.89809 0.88644 0.94342 1.23484 1.00459 0.99280 0.84913 1.76109 1.08102 1.04544 1.25492 1.78872 1.15312 1.15279 0.94971 1.47819 1.28493 1.22944 1.05427 0.64375 1.75007 1.08214 1.03865 1.26687 1.22243 1.03234 0.99607 0.99575 1.17095 0.83700 0.85119 0.83018 1.90941 1.61416 1.64568 1.31647 0.91051 0.76465 0.86463 0.81567 0.77349 0.79912 0.82707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.04 13.05 21.66 0.28 -47.75 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 3 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.56 -27.81 5.29 -307.00 -1.62 -29.43 16 10 C 0.42 19.59 7.85 87.66 0.69 20.27 16 11 O -0.63 -34.55 16.01 -3.07 -0.05 -34.60 16 12 C 0.09 2.75 5.79 85.63 0.50 3.25 16 13 N -0.47 -14.85 2.07 -655.62 -1.36 -16.21 16 14 C 0.16 3.62 10.25 83.33 0.85 4.48 16 15 C -0.21 -4.48 9.69 22.28 0.22 -4.26 16 16 C 0.10 2.59 5.91 -19.78 -0.12 2.47 16 17 C 0.20 4.64 7.95 137.29 1.09 5.73 16 18 N -0.27 -6.02 12.31 -52.23 -0.64 -6.66 16 19 N -0.05 -0.89 13.47 37.02 0.50 -0.39 16 20 N -0.20 -2.56 7.90 37.02 0.29 -2.27 16 21 H 0.50 1.30 8.96 -347.53 -3.12 -1.81 16 22 N -0.28 -5.75 12.13 -52.18 -0.63 -6.38 16 23 C -0.22 -6.89 9.70 22.84 0.22 -6.66 16 24 C 0.51 19.05 7.39 84.76 0.63 19.68 16 25 O -0.60 -27.86 16.61 -5.61 -0.09 -27.95 16 26 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.40 18.53 7.90 -92.71 -0.73 17.80 16 28 H 0.12 3.88 7.37 -2.38 -0.02 3.86 16 29 H 0.17 3.43 8.00 -2.39 -0.02 3.41 16 30 H 0.21 2.89 8.02 -2.91 -0.02 2.87 16 31 H 0.18 2.90 7.96 -2.91 -0.02 2.87 16 32 H 0.16 4.64 7.92 -2.91 -0.02 4.61 16 Total: -1.00 -82.21 301.02 1.43 -80.78 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -2.62 Total: 19.32 kcal Atomic # 6 Polarization: 21.76 SS G_CDS: 5.36 Total: 27.12 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.18 Total: -109.10 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -0.14 Total: -62.55 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -82.21 1.43 -80.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.873 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds