Wall clock time and date at job start Tue Mar 31 2020 03:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31309 * 1 3 3 Si 1.86806 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47173 * 274.80633 * 3 2 1 5 5 H 1.48499 * 109.46896 * 34.80574 * 3 2 1 6 6 H 1.48503 * 109.46717 * 154.80563 * 3 2 1 7 7 C 1.39134 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99871 * 213.74726 * 7 2 1 9 9 N 1.36692 * 120.00048 * 33.73867 * 7 2 1 10 10 C 1.46501 * 120.00000 * 353.17374 * 9 7 2 11 11 C 1.50703 * 109.47077 * 277.92443 * 10 9 7 12 12 O 1.20822 * 120.00269 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99796 * 179.97438 * 11 10 9 14 14 C 1.34775 * 120.00115 * 173.17717 * 9 7 2 15 15 O 1.21696 * 120.00000 * 5.05907 * 14 9 7 16 16 C 1.46988 * 120.00343 * 185.06771 * 14 9 7 17 17 C 1.37936 * 119.94762 * 332.26121 * 16 14 9 18 18 C 1.39771 * 119.91500 * 179.97438 * 17 16 14 19 19 C 1.36364 * 119.83238 * 0.02562 * 18 17 16 20 20 C 1.40745 * 119.73498 * 0.25318 * 19 18 17 21 21 N 1.32837 * 132.74135 * 180.39472 * 20 19 18 22 22 C 1.32382 * 109.74003 * 179.56780 * 21 20 19 23 23 N 1.31376 * 109.62135 * 359.75550 * 22 21 20 24 24 N 1.36569 * 119.88507 * 359.48655 * 20 19 18 25 25 H 0.97004 * 120.00174 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47254 * 37.92442 * 10 9 7 27 27 H 1.08999 * 109.47103 * 157.92401 * 10 9 7 28 28 H 0.96698 * 116.99850 * 179.97438 * 13 11 10 29 29 H 1.08000 * 120.04398 * 0.02562 * 17 16 14 30 30 H 1.07995 * 120.07890 * 180.02562 * 18 17 16 31 31 H 1.08001 * 120.13255 * 179.97438 * 19 18 17 32 32 H 1.07997 * 125.19069 * 179.71365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 2.3931 2.1051 -1.3951 5 1 1.4990 2.6212 0.7992 6 1 3.5918 1.4129 0.5960 7 6 2.0087 -1.2049 -0.0005 8 1 2.9522 -1.2840 0.5190 9 7 1.4979 -2.2888 -0.6585 10 6 0.1526 -2.2284 -1.2352 11 6 -0.8675 -2.5030 -0.1604 12 8 -0.5077 -2.7266 0.9711 13 8 -2.1759 -2.4990 -0.4602 14 6 2.2319 -3.4129 -0.7766 15 8 3.3108 -3.4965 -0.2198 16 6 1.7295 -4.5379 -1.5781 17 6 0.3710 -4.7236 -1.7288 18 6 -0.1060 -5.7933 -2.4915 19 6 0.7744 -6.6500 -3.0837 20 6 2.1582 -6.4537 -2.9180 21 7 3.2221 -7.1076 -3.3708 22 6 4.3262 -6.5188 -2.9386 23 7 4.0115 -5.4749 -2.2056 24 7 2.6121 -5.4018 -2.1747 25 1 -0.4850 0.8401 0.0004 26 1 -0.0190 -1.2369 -1.6542 27 1 0.0610 -2.9764 -2.0227 28 1 -2.7923 -2.6808 0.2623 29 1 -0.3232 -4.0429 -1.2586 30 1 -1.1690 -5.9409 -2.6116 31 1 0.4111 -7.4784 -3.6738 32 1 5.3321 -6.8470 -3.1548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:54 Heat of formation + Delta-G solvation = 56.211205 kcal Electronic energy + Delta-G solvation = -23451.452075 eV Core-core repulsion = 19803.245745 eV Total energy + Delta-G solvation = -3648.206330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.35945 -40.15754 -38.55566 -37.09133 -35.58815 -34.87081 -33.11691 -32.51756 -30.71412 -29.75082 -28.07552 -25.85104 -23.92367 -23.16868 -22.23398 -21.37651 -19.66525 -17.87971 -17.51175 -17.33579 -16.98750 -16.13078 -16.10068 -15.93773 -15.61910 -14.96770 -14.70413 -14.35520 -13.86197 -13.59769 -13.23138 -12.78131 -12.53808 -12.22209 -12.09369 -11.92176 -11.54646 -11.34429 -10.92192 -10.88768 -10.72373 -10.56152 -10.51048 -9.91020 -9.79764 -9.29446 -9.23266 -8.83523 -8.44956 -7.95352 -6.99727 -4.08791 0.54704 1.19354 2.28201 2.76568 2.99241 3.02655 3.09146 3.12874 3.36568 3.61215 3.77465 3.97659 4.12339 4.24277 4.64431 4.68218 4.89088 4.95711 5.11699 5.41342 5.45737 5.51060 5.90501 6.08137 6.15097 6.27882 6.37870 6.53069 6.65284 6.93257 7.10843 7.21733 7.55477 7.97042 8.23404 8.68589 8.69633 8.84747 9.46270 10.07022 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.019356 B = 0.006516 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.269736 B = 4295.798911 C = 5390.836401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.040 3.960 3 Si 0.930 3.070 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.292 4.292 8 H 0.123 0.877 9 N -0.392 5.392 10 C 0.089 3.911 11 C 0.489 3.511 12 O -0.496 6.496 13 O -0.529 6.529 14 C 0.458 3.542 15 O -0.547 6.547 16 C 0.146 3.854 17 C -0.189 4.189 18 C -0.052 4.052 19 C -0.121 4.121 20 C 0.276 3.724 21 N -0.556 5.556 22 C 0.215 3.785 23 N -0.303 5.303 24 N -0.262 5.262 25 H 0.282 0.718 26 H 0.136 0.864 27 H 0.114 0.886 28 H 0.397 0.603 29 H 0.171 0.829 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 -5.381 -6.898 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.168 4.168 3 Si 0.754 3.246 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.419 4.419 8 H 0.141 0.859 9 N -0.108 5.108 10 C -0.036 4.036 11 C 0.329 3.671 12 O -0.381 6.381 13 O -0.340 6.340 14 C 0.248 3.752 15 O -0.430 6.430 16 C 0.033 3.967 17 C -0.213 4.213 18 C -0.078 4.078 19 C -0.144 4.144 20 C 0.023 3.977 21 N -0.287 5.287 22 C -0.086 4.086 23 N -0.132 5.132 24 N -0.038 5.038 25 H 0.093 0.907 26 H 0.154 0.846 27 H 0.131 0.869 28 H 0.255 0.745 29 H 0.188 0.812 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -4.974 -5.097 -6.476 9.626 hybrid contribution -0.481 0.757 0.672 1.121 sum -5.455 -4.341 -5.803 9.071 Atomic orbital electron populations 1.69884 1.06776 1.29487 1.41897 1.25437 0.95188 1.00632 0.95511 0.85844 0.80357 0.79520 0.78862 1.19632 1.20626 1.18573 1.19965 1.06212 0.85157 1.30545 0.85900 1.43450 1.10262 1.11628 1.45489 1.22058 0.81253 1.07336 0.92999 1.23372 0.81530 0.71824 0.90387 1.90673 1.80580 1.44186 1.22628 1.84509 1.18702 1.84943 1.45875 1.16865 0.88039 0.82136 0.88111 1.90766 1.22545 1.79426 1.50260 1.20593 0.87842 0.92747 0.95563 1.22182 0.92780 1.01796 1.04499 1.21125 1.00819 0.92085 0.93732 1.20225 0.86807 1.02814 1.04530 1.21873 0.96021 0.86924 0.92922 1.70764 0.96115 1.31269 1.30510 1.26229 0.99296 0.90288 0.92811 1.78983 0.85132 1.23006 1.26119 1.47586 1.05975 1.18801 1.31437 0.90712 0.84615 0.86852 0.74550 0.81213 0.83031 0.82816 0.76174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.57 9.19 55.51 0.51 -19.06 16 2 C 0.04 0.95 4.93 -17.44 -0.09 0.86 16 3 Si 0.93 18.77 29.66 -169.99 -5.04 13.73 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.29 -7.60 9.11 -15.05 -0.14 -7.73 16 8 H 0.12 3.43 7.35 -52.49 -0.39 3.05 16 9 N -0.39 -9.49 2.19 -117.49 -0.26 -9.75 16 10 C 0.09 1.78 4.79 -5.19 -0.02 1.75 16 11 C 0.49 9.72 4.49 36.01 0.16 9.88 16 12 O -0.50 -11.93 16.93 -18.75 -0.32 -12.25 16 13 O -0.53 -8.02 13.42 -39.25 -0.53 -8.55 16 14 C 0.46 11.50 7.47 -12.72 -0.09 11.40 16 15 O -0.55 -15.79 15.99 5.19 0.08 -15.71 16 16 C 0.15 3.06 6.52 -82.06 -0.54 2.52 16 17 C -0.19 -3.08 7.50 -39.12 -0.29 -3.38 16 18 C -0.05 -0.64 10.04 -39.68 -0.40 -1.04 16 19 C -0.12 -1.63 10.09 -39.31 -0.40 -2.02 16 20 C 0.28 4.94 7.88 -156.35 -1.23 3.70 16 21 N -0.56 -9.91 11.24 -13.99 -0.16 -10.07 16 22 C 0.21 3.72 12.98 -92.00 -1.19 2.52 16 23 N -0.30 -6.53 12.07 29.25 0.35 -6.17 16 24 N -0.26 -5.48 3.92 -8.82 -0.03 -5.52 16 25 H 0.28 6.10 8.31 -40.82 -0.34 5.76 16 26 H 0.14 2.77 6.11 -51.93 -0.32 2.45 16 27 H 0.11 1.90 4.08 -52.40 -0.21 1.68 16 28 H 0.40 4.40 9.10 45.56 0.41 4.81 16 29 H 0.17 2.75 2.84 -52.49 -0.15 2.60 16 30 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.22 2.69 8.06 -52.49 -0.42 2.26 16 LS Contribution 283.69 15.07 4.28 4.28 Total: -1.00 -34.88 283.69 -6.40 -41.28 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -1.05 Total: 9.32 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: -4.23 Total: 18.47 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.41 Total: -50.57 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.76 Total: -36.51 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.04 Total: 13.73 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.88 -6.40 -41.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.492 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds