Wall clock time and date at job start Tue Mar 31 2020 03:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00244 * 2 1 4 4 H 1.48504 * 109.47078 * 240.00682 * 3 2 1 5 5 H 1.48500 * 109.46990 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47108 * 120.00211 * 3 2 1 7 7 C 1.38817 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00429 * 155.78109 * 7 2 1 9 9 N 1.36942 * 119.99882 * 335.78559 * 7 2 1 10 10 C 1.46501 * 119.99538 * 326.91188 * 9 7 2 11 11 C 1.50698 * 109.47162 * 275.87809 * 10 9 7 12 12 O 1.20825 * 119.99978 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99841 * 180.02562 * 11 10 9 14 14 S 1.65594 * 120.00254 * 146.91054 * 9 7 2 15 15 O 1.42096 * 104.27867 * 153.92748 * 14 9 7 16 16 O 1.42104 * 104.27762 * 26.07087 * 14 9 7 17 17 C 1.81400 * 104.44962 * 270.00244 * 14 9 7 18 18 C 1.50699 * 109.46956 * 180.02562 * 17 14 9 19 19 C 1.35454 * 126.77814 * 89.99935 * 18 17 14 20 20 C 1.41383 * 103.98457 * 179.97438 * 19 18 17 21 21 N 1.30177 * 106.39746 * 359.97438 * 20 19 18 22 22 O 1.20924 * 111.60147 * 359.72765 * 21 20 19 23 23 H 0.97003 * 120.00205 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47763 * 35.88183 * 10 9 7 25 25 H 1.09003 * 109.46662 * 155.87812 * 10 9 7 26 26 H 0.96711 * 116.99989 * 180.02562 * 13 11 10 27 27 H 1.08996 * 109.47291 * 59.99821 * 17 14 9 28 28 H 1.09004 * 109.47114 * 299.99905 * 17 14 9 29 29 H 1.08000 * 128.00560 * 359.97438 * 19 18 17 30 30 H 1.07998 * 126.79884 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0189 -1.2432 -0.3842 9 7 1.4159 -2.3362 0.4854 10 6 0.4640 -2.2461 1.5953 11 6 1.2153 -2.2312 2.9015 12 8 2.4222 -2.2894 2.9050 13 8 0.5438 -2.1534 4.0611 14 16 1.7732 -3.8091 -0.1816 15 8 1.5286 -4.7370 0.8664 16 8 3.0766 -3.6420 -0.7226 17 6 0.5542 -4.0125 -1.5094 18 6 0.7789 -5.3331 -2.1996 19 6 0.2207 -6.5236 -1.8741 20 6 0.7574 -7.4235 -2.8234 21 7 1.5449 -6.7242 -3.5885 22 8 1.5653 -5.5603 -3.2610 23 1 -0.4850 0.8400 0.0004 24 1 -0.1187 -1.3298 1.5009 25 1 -0.2051 -3.1063 1.5707 26 1 1.0691 -2.1466 4.8731 27 1 0.6634 -3.2022 -2.2302 28 1 -0.4504 -3.9900 -1.0870 29 1 -0.4736 -6.7361 -1.0746 30 1 0.5542 -8.4816 -2.8987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184138.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:22 Heat of formation + Delta-G solvation = -84.884721 kcal Electronic energy + Delta-G solvation = -21724.716622 eV Core-core repulsion = 18037.710019 eV Total energy + Delta-G solvation = -3687.006603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.66266 -39.46779 -36.19593 -35.86420 -35.12033 -34.64319 -33.80638 -32.84372 -32.01147 -27.95597 -27.58181 -24.57547 -23.23498 -21.34237 -21.12907 -18.80071 -17.61495 -17.47076 -17.23901 -17.07469 -16.69850 -15.76531 -15.19662 -15.01994 -14.94157 -14.68349 -14.55297 -13.75329 -13.25127 -13.02202 -12.66512 -12.23222 -12.01261 -11.90918 -11.37034 -11.26467 -11.09931 -10.95919 -10.85932 -10.83803 -10.68137 -10.56742 -10.42166 -10.27826 -9.93982 -9.56872 -8.91048 -8.24974 -6.97860 -4.42389 1.06729 1.84135 2.49029 2.96281 3.02443 3.02979 3.10646 3.24002 3.55676 3.82764 4.08088 4.41723 4.53354 4.70399 5.04326 5.16549 5.35703 5.50965 5.68075 5.73346 5.91444 5.98070 6.09836 6.27583 6.40233 6.76196 7.03014 7.12697 7.94770 8.27302 8.43143 8.62136 8.77152 9.97713 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.006527 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.156871 B = 4288.741001 C = 5111.221893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.214 4.214 8 H 0.122 0.878 9 N -0.783 5.783 10 C 0.130 3.870 11 C 0.463 3.537 12 O -0.502 6.502 13 O -0.527 6.527 14 S 2.456 3.544 15 O -0.992 6.992 16 O -0.963 6.963 17 C -0.582 4.582 18 C 0.000 4.000 19 C -0.244 4.244 20 C -0.010 4.010 21 N -0.373 5.373 22 O 0.097 5.903 23 H 0.285 0.715 24 H 0.149 0.851 25 H 0.102 0.898 26 H 0.398 0.602 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.175 0.825 30 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 -1.769 1.387 5.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.184 4.184 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.139 0.861 9 N -0.604 5.604 10 C 0.001 3.999 11 C 0.302 3.698 12 O -0.387 6.387 13 O -0.339 6.339 14 S 2.557 3.443 15 O -0.981 6.981 16 O -0.953 6.953 17 C -0.696 4.696 18 C -0.064 4.064 19 C -0.267 4.267 20 C -0.189 4.189 21 N -0.077 5.077 22 O 0.032 5.968 23 H 0.096 0.904 24 H 0.165 0.835 25 H 0.120 0.880 26 H 0.255 0.745 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.192 0.808 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -4.094 -2.945 0.095 5.044 hybrid contribution -0.610 0.681 0.744 1.178 sum -4.703 -2.264 0.839 5.287 Atomic orbital electron populations 1.69846 1.06540 1.29914 1.39391 1.25951 0.95562 1.01603 0.95306 0.85855 0.79504 0.78683 0.80391 1.18537 1.20222 1.18946 1.20117 0.97051 0.83741 1.35637 0.86111 1.53572 1.52085 1.23102 1.31667 1.20817 0.91083 1.07886 0.80119 1.24552 0.87641 0.71609 0.85961 1.90664 1.16012 1.44634 1.87426 1.84554 1.45778 1.86401 1.17140 1.15206 0.78541 0.75547 0.75036 1.93351 1.86805 1.64904 1.53059 1.93385 1.36476 1.85016 1.80397 1.30130 1.23206 0.95371 1.20898 1.23768 0.94594 0.97524 0.90553 1.22611 1.07431 0.91729 1.04931 1.25011 0.97118 1.02368 0.94355 1.73850 1.20594 0.90647 1.22628 1.84845 1.52312 1.21815 1.37808 0.90445 0.83488 0.88036 0.74471 0.83996 0.84196 0.80766 0.79175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -17.03 11.27 55.49 0.63 -16.41 16 2 C 0.03 0.64 4.98 -17.43 -0.09 0.56 16 3 Si 0.93 17.24 29.62 -169.99 -5.03 12.21 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.28 -4.94 7.11 56.52 0.40 -4.53 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.21 -4.96 8.95 -15.05 -0.13 -5.09 16 8 H 0.12 2.90 7.31 -52.49 -0.38 2.52 16 9 N -0.78 -17.49 2.32 -61.08 -0.14 -17.63 16 10 C 0.13 2.59 5.47 -5.19 -0.03 2.56 16 11 C 0.46 9.41 8.36 36.00 0.30 9.71 16 12 O -0.50 -11.94 17.07 -18.75 -0.32 -12.26 16 13 O -0.53 -8.32 13.42 -39.25 -0.53 -8.84 16 14 S 2.46 55.54 5.31 -107.50 -0.57 54.97 16 15 O -0.99 -23.83 16.97 -57.54 -0.98 -24.81 16 16 O -0.96 -25.16 16.85 -57.54 -0.97 -26.13 16 17 C -0.58 -10.65 6.74 36.01 0.24 -10.41 16 18 C 0.00 0.01 6.75 -35.30 -0.24 -0.23 16 19 C -0.24 -3.97 11.09 -39.38 -0.44 -4.41 16 20 C -0.01 -0.16 12.17 -17.06 -0.21 -0.36 16 21 N -0.37 -6.87 12.07 30.36 0.37 -6.50 16 22 O 0.10 1.92 11.20 17.17 0.19 2.11 16 23 H 0.28 5.51 8.31 -40.82 -0.34 5.17 16 24 H 0.15 2.89 5.30 -51.93 -0.28 2.61 16 25 H 0.10 1.75 7.58 -51.93 -0.39 1.36 16 26 H 0.40 4.43 9.10 45.56 0.41 4.85 16 27 H 0.14 2.50 8.14 -51.93 -0.42 2.08 16 28 H 0.14 2.16 8.14 -51.92 -0.42 1.74 16 29 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 291.93 15.07 4.40 4.40 Total: -1.00 -31.32 291.93 -5.01 -36.33 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -1.46 Total: 10.25 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.59 Total: -7.68 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.85 Total: -40.54 kcal Atomic # 8 Polarization: -67.33 SS G_CDS: -2.60 Total: -69.93 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 16 Polarization: 55.54 SS G_CDS: -0.57 Total: 54.97 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.32 -5.01 -36.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184138.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.556 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds