Wall clock time and date at job start Tue Mar 31 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48504 * 109.47395 * 270.00462 * 3 2 1 5 5 H 1.48504 * 109.47218 * 30.00200 * 3 2 1 6 6 H 1.48500 * 109.47369 * 149.99989 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 N 1.65599 * 104.44748 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00146 * 65.00260 * 14 11 10 16 16 H 1.08999 * 109.63400 * 335.39215 * 15 14 11 17 17 C 1.53060 * 109.63405 * 215.00171 * 15 14 11 18 18 C 1.51796 * 110.74766 * 155.38223 * 17 15 14 19 19 C 1.51776 * 113.81243 * 66.80270 * 18 17 15 20 20 C 1.52986 * 110.88398 * 293.00356 * 19 18 17 21 21 N 1.47197 * 108.66694 * 86.46541 * 20 19 18 22 22 C 1.33370 * 120.42396 * 288.04294 * 21 20 19 23 23 O 1.21284 * 119.89028 * 180.28795 * 22 21 20 24 24 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 26 26 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 27 27 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 28 28 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 29 29 H 0.97001 * 120.00004 * 244.99733 * 14 11 10 30 30 H 1.09006 * 109.21969 * 275.70672 * 17 15 14 31 31 H 1.08999 * 109.22696 * 35.05098 * 17 15 14 32 32 H 1.09000 * 108.61522 * 187.92712 * 18 17 15 33 33 H 1.08996 * 108.61130 * 305.82689 * 18 17 15 34 34 H 1.09010 * 109.19430 * 53.36196 * 19 18 17 35 35 H 1.08993 * 109.19571 * 172.63640 * 19 18 17 36 36 H 1.09000 * 109.60230 * 206.22008 * 20 19 18 37 37 H 1.09004 * 109.60077 * 326.54432 * 20 19 18 38 38 H 0.96991 * 119.78507 * 108.03943 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 7 2.5206 -6.3926 -0.0005 15 6 3.4182 -6.5229 1.1500 16 1 3.4747 -5.5721 1.6799 17 6 4.8140 -6.9278 0.6700 18 6 5.8719 -6.4999 1.6710 19 6 5.7926 -7.2330 2.9976 20 6 4.5133 -6.8620 3.7500 21 7 3.4270 -7.7459 3.2968 22 6 2.8995 -7.5988 2.0808 23 8 2.0012 -8.3291 1.7192 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6042 -0.8904 29 1 2.6188 -6.9857 -0.7618 30 1 4.8518 -8.0105 0.5488 31 1 5.0153 -6.4527 -0.2901 32 1 6.8552 -6.6756 1.2345 33 1 5.7614 -5.4319 1.8588 34 1 5.8017 -8.3076 2.8143 35 1 6.6565 -6.9667 3.6064 36 1 4.6681 -6.9923 4.8211 37 1 4.2545 -5.8238 3.5416 38 1 3.0928 -8.4398 3.8864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170887987.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:31 Heat of formation + Delta-G solvation = -123.644539 kcal Electronic energy + Delta-G solvation = -22058.246255 eV Core-core repulsion = 18641.225089 eV Total energy + Delta-G solvation = -3417.021166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42331 -36.86148 -36.53661 -35.50253 -35.31409 -33.91379 -32.98543 -31.18738 -29.87120 -26.07290 -25.63045 -24.29530 -21.76110 -21.10078 -20.07041 -18.83053 -17.57180 -17.34361 -17.21679 -16.48969 -15.93043 -15.34084 -15.14373 -14.64607 -14.56038 -14.34841 -14.29621 -13.80820 -13.48601 -13.24465 -12.54170 -12.53706 -12.02461 -11.94086 -11.76474 -11.53489 -11.45810 -11.20555 -11.14192 -11.09505 -11.02031 -10.96499 -10.51107 -10.39900 -10.34776 -9.74583 -9.40155 -9.22268 -9.01915 -8.51939 -6.13784 -4.19844 0.76674 2.63664 2.98940 3.24549 3.25161 3.30813 3.32994 4.17897 4.24248 4.34836 4.42234 4.44721 4.56846 4.74598 4.78629 4.85532 5.06639 5.12323 5.21352 5.28805 5.45943 5.57919 5.60267 5.61594 5.67930 5.74874 5.88544 5.96089 6.44650 6.70691 7.02865 7.15653 7.28788 7.34763 7.78554 8.15306 8.21514 8.83509 9.45006 10.97270 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.004754 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.991160 B = 5888.497834 C = 6681.627061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.591 4.591 11 S 2.588 3.412 12 O -0.959 6.959 13 O -0.962 6.962 14 N -1.105 6.105 15 C 0.140 3.860 16 H 0.109 0.891 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.143 4.143 20 C 0.100 3.900 21 N -0.726 5.726 22 C 0.506 3.494 23 O -0.528 6.528 24 H 0.265 0.735 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.417 0.583 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.346 -13.802 6.085 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.685 3.315 12 O -0.949 6.949 13 O -0.952 6.952 14 N -0.860 5.860 15 C 0.027 3.973 16 H 0.126 0.874 17 C -0.160 4.160 18 C -0.163 4.163 19 C -0.181 4.181 20 C -0.024 4.024 21 N -0.380 5.380 22 C 0.289 3.711 23 O -0.403 6.403 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.251 0.749 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 13.794 -14.008 5.898 20.525 hybrid contribution 1.012 0.745 0.023 1.257 sum 14.806 -13.263 5.921 20.741 Atomic orbital electron populations 1.69958 1.06134 1.27232 1.49429 1.25071 0.94960 0.99542 0.94896 0.86469 0.79656 0.82879 0.78249 1.20453 1.21016 1.19781 1.20988 0.93025 0.89719 1.52303 0.92017 1.18971 0.92698 0.90466 0.99011 1.30493 1.13794 1.18114 1.09976 1.05801 0.74720 0.76501 0.74440 1.93566 1.71037 1.84714 1.45552 1.93557 1.71178 1.85316 1.45195 1.55681 1.52697 1.51890 1.25701 1.20799 0.90762 0.98643 0.87057 0.87383 1.21628 0.91363 1.02704 1.00329 1.21178 0.99088 1.01164 0.94888 1.21865 0.97969 1.01558 0.96750 1.21867 0.86181 0.94873 0.99477 1.45895 1.38584 1.37075 1.16426 1.20954 0.81981 0.85583 0.82537 1.90740 1.28954 1.45571 1.75034 0.92493 0.94749 0.94788 0.86531 0.85871 0.74909 0.90908 0.89161 0.90871 0.90971 0.91062 0.90265 0.89203 0.90175 0.76339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.59 -11.01 5.90 37.16 0.22 -10.79 16 11 S 2.59 48.72 5.38 -107.50 -0.58 48.14 16 12 O -0.96 -21.31 17.81 -57.54 -1.02 -22.34 16 13 O -0.96 -21.04 18.08 -57.54 -1.04 -22.08 16 14 N -1.10 -15.67 4.87 -5.55 -0.03 -15.70 16 15 C 0.14 1.67 2.25 -68.70 -0.15 1.52 16 16 H 0.11 1.16 5.82 -51.93 -0.30 0.85 16 17 C -0.12 -0.98 5.25 -27.31 -0.14 -1.13 16 18 C -0.13 -0.76 5.28 -27.96 -0.15 -0.90 16 19 C -0.14 -0.76 5.73 -27.36 -0.16 -0.91 16 20 C 0.10 0.65 6.46 -3.67 -0.02 0.63 16 21 N -0.73 -7.17 5.27 -59.90 -0.32 -7.49 16 22 C 0.51 7.07 7.00 -11.26 -0.08 6.99 16 23 O -0.53 -9.78 17.31 5.55 0.10 -9.69 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.12 1.85 7.45 -51.92 -0.39 1.47 16 28 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 29 H 0.42 5.15 8.80 -34.47 -0.30 4.85 16 30 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 31 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.07 0.41 8.05 -51.92 -0.42 -0.01 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.54 6.73 -51.93 -0.35 0.19 16 38 H 0.40 3.51 8.91 -40.82 -0.36 3.15 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -38.57 324.77 -8.75 -47.32 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.44 Total: 3.66 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.04 Total: -16.96 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.39 Total: -48.77 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -1.97 Total: -54.10 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 48.72 SS G_CDS: -0.58 Total: 48.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -38.57 -8.75 -47.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887987.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.323 kcal (2) G-P(sol) polarization free energy of solvation -38.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds