Wall clock time and date at job start Tue Mar 31 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86798 * 120.00234 * 2 1 4 4 H 1.48503 * 109.47137 * 269.99558 * 3 2 1 5 5 H 1.48498 * 109.47462 * 29.99731 * 3 2 1 6 6 H 1.48505 * 109.47233 * 150.00276 * 3 2 1 7 7 C 1.38756 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99803 * 0.02562 * 7 2 1 9 9 O 1.34919 * 120.00252 * 179.97438 * 7 2 1 10 10 C 1.34310 * 116.99988 * 180.02562 * 9 7 2 11 11 O 1.21207 * 120.00018 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00093 * 180.02562 * 10 9 7 13 13 H 1.09001 * 110.88345 * 62.35394 * 12 10 9 14 14 C 1.54625 * 110.96846 * 298.54769 * 12 10 9 15 15 C 1.51286 * 104.19405 * 266.67749 * 14 12 10 16 16 O 1.21283 * 124.93955 * 163.70869 * 15 14 12 17 17 N 1.34417 * 110.11297 * 343.74897 * 15 14 12 18 18 C 1.46498 * 124.34508 * 179.57696 * 17 15 14 19 19 C 1.50697 * 109.47521 * 90.02272 * 18 17 15 20 20 C 1.38228 * 119.62082 * 94.99972 * 19 18 17 21 21 C 1.38622 * 119.16066 * 179.97438 * 20 19 18 22 22 C 1.38678 * 118.42475 * 359.97438 * 21 20 19 23 23 C 1.38186 * 119.15692 * 0.02562 * 22 21 20 24 24 N 1.31855 * 119.61679 * 274.72120 * 19 18 17 25 25 C 1.46761 * 111.30293 * 359.59072 * 17 15 14 26 26 H 0.97008 * 119.99701 * 0.02562 * 1 2 3 27 27 H 1.09001 * 110.48978 * 147.99721 * 14 12 10 28 28 H 1.09000 * 110.49031 * 25.35151 * 14 12 10 29 29 H 1.09003 * 109.46785 * 210.01982 * 18 17 15 30 30 H 1.08996 * 109.47196 * 330.01398 * 18 17 15 31 31 H 1.07997 * 120.41870 * 359.97438 * 20 19 18 32 32 H 1.08000 * 120.79050 * 180.02562 * 21 20 19 33 33 H 1.07998 * 120.42374 * 179.97438 * 22 21 20 34 34 H 1.08001 * 119.61513 * 180.02562 * 23 22 21 35 35 H 1.08998 * 110.24663 * 136.02095 * 25 17 15 36 36 H 1.09002 * 110.24657 * 258.02169 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0463 -1.4001 5 1 1.4460 2.6527 0.7000 6 1 3.5461 1.4401 0.7000 7 6 2.0081 -1.2017 0.0005 8 1 1.4680 -2.1370 0.0005 9 8 3.3573 -1.2018 0.0000 10 6 3.9670 -2.3985 0.0000 11 8 3.3068 -3.4150 0.0001 12 6 5.4719 -2.4776 0.0001 13 1 5.8847 -2.0260 0.9022 14 6 6.0607 -1.8175 -1.2683 15 6 6.2130 -2.9623 -2.2455 16 8 6.3756 -2.8381 -3.4410 17 7 6.1411 -4.1370 -1.5962 18 6 6.2414 -5.4471 -2.2442 19 6 7.6843 -5.8804 -2.2806 20 6 8.1765 -6.7012 -1.2832 21 6 9.5051 -7.0945 -1.3264 22 6 10.2925 -6.6459 -2.3762 23 6 9.7306 -5.8272 -3.3372 24 7 8.4612 -5.4767 -3.2665 25 6 5.9488 -3.9387 -0.1548 26 1 -0.4850 0.8401 -0.0004 27 1 7.0306 -1.3703 -1.0504 28 1 5.3740 -1.0684 -1.6624 29 1 5.6573 -6.1760 -1.6824 30 1 5.8565 -5.3796 -3.2617 31 1 7.5341 -7.0319 -0.4805 32 1 9.9170 -7.7356 -0.5611 33 1 11.3318 -6.9322 -2.4413 34 1 10.3370 -5.4740 -4.1582 35 1 5.1908 -4.6249 0.2226 36 1 6.8898 -4.0864 0.3751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766922442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:15 Heat of formation + Delta-G solvation = -66.413862 kcal Electronic energy + Delta-G solvation = -22586.827419 eV Core-core repulsion = 19036.844010 eV Total energy + Delta-G solvation = -3549.983409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80645 -40.07278 -38.85561 -36.32426 -35.23936 -33.82252 -32.59879 -32.33550 -31.01759 -27.55195 -27.07411 -25.63275 -23.75588 -23.04351 -22.26380 -19.80446 -19.29132 -18.03246 -17.42164 -17.05956 -16.64742 -16.43796 -15.94065 -15.50467 -15.09923 -14.69661 -14.60735 -14.08088 -13.93560 -13.59349 -13.39981 -13.23501 -12.98327 -12.49362 -12.38216 -12.29468 -12.04273 -11.93565 -11.53119 -11.28226 -11.20280 -10.52222 -10.39227 -10.11434 -9.74482 -9.68197 -9.58884 -9.24451 -9.23049 -8.71503 -8.65276 -6.40355 -4.16648 0.81657 1.06531 2.80715 3.02343 3.07555 3.22384 3.30490 3.35738 3.73619 3.90304 4.09611 4.22095 4.43654 4.47088 4.58123 4.61185 4.81156 4.88448 4.97198 5.09243 5.24269 5.27009 5.38220 5.47589 5.53409 5.64018 5.68011 5.82864 5.88125 5.91370 6.03544 6.31713 6.45052 6.57901 7.21878 7.67616 7.85497 7.99692 8.36612 8.54505 8.97178 9.61125 10.67880 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.034792 B = 0.003673 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.581585 B = 7621.171595 C = 7906.368404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.382 4.382 8 H 0.110 0.890 9 O -0.246 6.246 10 C 0.414 3.586 11 O -0.533 6.533 12 C -0.087 4.087 13 H 0.125 0.875 14 C -0.147 4.147 15 C 0.522 3.478 16 O -0.517 6.517 17 N -0.611 5.611 18 C 0.178 3.822 19 C 0.111 3.889 20 C -0.160 4.160 21 C -0.079 4.079 22 C -0.175 4.175 23 C 0.098 3.902 24 N -0.460 5.460 25 C 0.116 3.884 26 H 0.280 0.720 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.101 0.899 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.427 -10.997 0.501 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.458 4.458 8 H 0.127 0.873 9 O -0.154 6.154 10 C 0.259 3.741 11 O -0.428 6.428 12 C -0.107 4.107 13 H 0.143 0.857 14 C -0.187 4.187 15 C 0.309 3.691 16 O -0.391 6.391 17 N -0.346 5.346 18 C 0.055 3.945 19 C -0.028 4.028 20 C -0.180 4.180 21 C -0.105 4.105 22 C -0.196 4.196 23 C -0.059 4.059 24 N -0.169 5.169 25 C -0.007 4.007 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.172 0.828 35 H 0.119 0.881 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.760 -10.567 -0.829 22.423 hybrid contribution 0.651 0.133 0.808 1.046 sum 20.411 -10.435 -0.021 22.924 Atomic orbital electron populations 1.69604 1.05747 1.28498 1.47268 1.24549 0.95009 0.98720 0.95425 0.86243 0.80312 0.81490 0.79097 1.19707 1.20718 1.18274 1.20644 0.75977 0.96996 1.52172 0.87270 1.83482 1.24078 1.31061 1.76781 1.22433 0.89755 0.82872 0.79067 1.90594 1.66500 1.36212 1.49494 1.21729 0.91496 0.96701 1.00798 0.85726 1.22390 1.04175 0.98056 0.94120 1.20850 0.75044 0.84823 0.88362 1.90725 1.48654 1.85483 1.14280 1.48080 1.72726 1.05374 1.08416 1.20125 0.89708 0.84082 1.00595 1.21773 0.97149 0.93479 0.90447 1.22033 0.96525 0.99522 0.99934 1.21579 0.93679 0.97654 0.97549 1.22179 1.01283 0.99928 0.96163 1.22834 0.91306 0.94016 0.97768 1.67615 1.05275 1.20528 1.23494 1.22062 1.01308 0.96418 0.80922 0.90954 0.87034 0.86646 0.88342 0.88203 0.84601 0.84837 0.84910 0.82832 0.88073 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.65 13.96 55.48 0.77 -24.87 16 2 C 0.07 1.90 5.49 -17.53 -0.10 1.80 16 3 Si 0.90 21.06 28.62 -169.99 -4.86 16.20 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.38 -11.15 10.10 30.92 0.31 -10.84 16 8 H 0.11 3.52 7.09 -52.48 -0.37 3.15 16 9 O -0.25 -6.23 8.36 -20.70 -0.17 -6.40 16 10 C 0.41 9.09 7.20 36.01 0.26 9.35 16 11 O -0.53 -13.23 14.74 -19.05 -0.28 -13.51 16 12 C -0.09 -1.32 3.66 -90.14 -0.33 -1.65 16 13 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 14 C -0.15 -2.23 6.40 -26.74 -0.17 -2.40 16 15 C 0.52 9.15 8.02 -10.86 -0.09 9.06 16 16 O -0.52 -10.83 17.59 5.56 0.10 -10.73 16 17 N -0.61 -9.10 2.92 -173.79 -0.51 -9.60 16 18 C 0.18 2.33 6.24 -5.20 -0.03 2.30 16 19 C 0.11 1.36 6.36 -82.59 -0.53 0.83 16 20 C -0.16 -1.48 9.72 -39.44 -0.38 -1.87 16 21 C -0.08 -0.62 10.18 -39.28 -0.40 -1.02 16 22 C -0.18 -1.42 10.11 -39.44 -0.40 -1.82 16 23 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 24 N -0.46 -6.32 10.27 -9.47 -0.10 -6.42 16 25 C 0.12 1.49 6.73 -3.13 -0.02 1.47 16 26 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.12 1.96 7.73 -51.93 -0.40 1.56 16 29 H 0.10 1.03 8.04 -51.93 -0.42 0.61 16 30 H 0.10 1.48 7.93 -51.93 -0.41 1.07 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.10 1.39 6.94 -51.93 -0.36 1.03 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -36.57 321.87 -6.33 -42.89 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.06 Total: 1.55 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.07 Total: 6.05 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.17 Total: -40.90 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.36 Total: -30.64 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.57 -6.33 -42.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766922442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.519 kcal (2) G-P(sol) polarization free energy of solvation -36.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds