Wall clock time and date at job start Tue Mar 31 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48502 * 109.46992 * 270.00112 * 3 2 1 5 5 H 1.48499 * 109.47292 * 29.99426 * 3 2 1 6 6 H 1.48496 * 109.47388 * 150.00142 * 3 2 1 7 7 C 1.37874 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99750 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00293 * 179.97438 * 7 2 1 10 10 O 1.42107 * 106.39649 * 66.46318 * 9 7 2 11 11 O 1.42095 * 106.40355 * 293.54332 * 9 7 2 12 12 N 1.65596 * 107.21915 * 180.02562 * 9 7 2 13 13 C 1.46504 * 120.00116 * 65.00223 * 12 9 7 14 14 H 1.09009 * 109.49709 * 25.07817 * 13 12 9 15 15 C 1.53120 * 109.50524 * 265.00157 * 13 12 9 16 16 C 1.53114 * 109.15863 * 182.36227 * 15 13 12 17 17 C 1.53032 * 109.28138 * 57.65487 * 16 15 13 18 18 N 1.46850 * 109.52341 * 300.81863 * 17 16 15 19 19 C 1.46900 * 111.00100 * 185.83754 * 18 17 16 20 20 C 1.54038 * 113.81507 * 152.23294 * 19 18 17 21 21 O 1.44176 * 85.51453 * 223.19572 * 20 19 18 22 22 C 1.44173 * 93.34371 * 24.19563 * 21 20 19 23 23 C 1.46850 * 111.19732 * 61.73966 * 18 17 16 24 24 H 0.97002 * 120.00112 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00364 * 245.00239 * 12 9 7 26 26 H 1.09003 * 109.52108 * 62.45741 * 15 13 12 27 27 H 1.08993 * 109.57257 * 302.30165 * 15 13 12 28 28 H 1.09001 * 109.50540 * 297.70560 * 16 15 13 29 29 H 1.09007 * 109.53525 * 177.61639 * 16 15 13 30 30 H 1.09003 * 109.46674 * 180.80345 * 17 16 15 31 31 H 1.09001 * 109.45257 * 60.82689 * 17 16 15 32 32 H 1.09001 * 113.08067 * 284.13772 * 19 18 17 33 33 H 1.09001 * 113.86540 * 337.34635 * 20 19 18 34 34 H 1.08999 * 113.86002 * 109.04828 * 20 19 18 35 35 H 1.09003 * 113.86657 * 221.65893 * 22 21 20 36 36 H 1.08994 * 113.86598 * 89.94940 * 22 21 20 37 37 H 1.08999 * 109.46344 * 58.27412 * 23 18 17 38 38 H 1.08992 * 109.46097 * 178.24130 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7666 -1.1940 -0.0001 10 8 4.1682 -0.6487 1.2492 11 8 4.1674 -0.6503 -1.2503 12 7 4.2568 -2.7757 0.0000 13 6 3.9611 -3.6344 -1.1496 14 1 3.8380 -3.0193 -2.0411 15 6 2.6710 -4.4158 -0.8856 16 6 2.4012 -5.3536 -2.0655 17 6 3.5987 -6.2881 -2.2524 18 7 4.8075 -5.4927 -2.5027 19 6 5.9501 -6.3583 -2.8238 20 6 7.0071 -5.6860 -3.7202 21 8 7.0319 -6.9374 -4.4358 22 6 5.7009 -7.3001 -4.0170 23 6 5.1134 -4.6186 -1.3630 24 1 -0.4850 0.8401 -0.0004 25 1 4.7397 -3.1338 0.7612 26 1 1.8395 -3.7197 -0.7760 27 1 2.7790 -5.0010 0.0276 28 1 2.2535 -4.7656 -2.9713 29 1 1.5069 -5.9438 -1.8649 30 1 3.4158 -6.9476 -3.1007 31 1 3.7371 -6.8854 -1.3512 32 1 6.3676 -6.8569 -1.9491 33 1 6.6223 -4.8508 -4.3054 34 1 7.9391 -5.4541 -3.2049 35 1 5.5969 -8.3484 -3.7371 36 1 4.9172 -6.9578 -4.6928 37 1 5.2448 -5.2238 -0.4661 38 1 6.0306 -4.0657 -1.5654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:27 Heat of formation + Delta-G solvation = -87.386412 kcal Electronic energy + Delta-G solvation = -22220.617754 eV Core-core repulsion = 18805.168858 eV Total energy + Delta-G solvation = -3415.448895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71654 -38.51602 -35.63359 -34.55499 -34.43049 -33.05909 -32.28274 -29.09127 -28.08493 -26.63888 -26.38763 -23.75282 -22.53750 -20.28292 -19.90046 -19.08590 -17.56544 -17.02045 -16.79121 -16.50050 -15.95722 -15.38774 -14.95531 -14.71931 -14.46498 -13.98162 -13.78587 -13.62259 -13.29408 -12.97402 -12.87041 -12.76008 -12.55690 -11.67115 -11.47767 -11.37964 -11.30648 -11.20670 -10.80946 -10.71722 -10.66961 -10.60288 -10.48528 -10.24526 -9.89434 -9.73775 -9.21241 -9.14796 -8.63897 -8.50730 -6.80593 -5.34581 2.05759 3.07328 3.18103 3.27186 3.52324 3.65691 3.95264 3.97039 4.36006 4.59677 4.76756 4.87996 4.94741 5.01144 5.10647 5.22749 5.27068 5.30097 5.34926 5.40750 5.54330 5.62002 5.70111 5.80748 5.85577 5.87743 5.95599 6.04852 6.15546 6.18419 6.34515 6.61786 6.67500 6.92443 6.96413 7.47465 7.71948 8.21964 8.70744 10.31137 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.028995 B = 0.004608 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.446833 B = 6074.518742 C = 6499.203872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.154 3.846 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.256 1.256 6 H -0.221 1.221 7 C -1.015 5.015 8 H 0.126 0.874 9 S 2.674 3.326 10 O -1.010 7.010 11 O -1.010 7.010 12 N -1.120 6.120 13 C 0.163 3.837 14 H 0.102 0.898 15 C -0.148 4.148 16 C -0.115 4.115 17 C 0.053 3.947 18 N -0.526 5.526 19 C 0.010 3.990 20 C 0.048 3.952 21 O -0.384 6.384 22 C 0.045 3.955 23 C 0.053 3.947 24 H 0.280 0.720 25 H 0.403 0.597 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -13.703 -4.487 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.065 4.065 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.180 1.180 6 H -0.143 1.143 7 C -1.150 5.150 8 H 0.144 0.856 9 S 2.776 3.224 10 O -1.000 7.000 11 O -1.000 7.000 12 N -0.874 5.874 13 C 0.055 3.945 14 H 0.120 0.880 15 C -0.187 4.187 16 C -0.153 4.153 17 C -0.075 4.075 18 N -0.253 5.253 19 C -0.099 4.099 20 C -0.029 4.029 21 O -0.302 6.302 22 C -0.032 4.032 23 C -0.077 4.077 24 H 0.091 0.909 25 H 0.234 0.766 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.866 -12.636 -5.222 15.773 hybrid contribution -0.282 -0.185 1.299 1.342 sum 7.584 -12.821 -3.923 15.404 Atomic orbital electron populations 1.69983 1.06555 1.29023 1.39654 1.24410 0.94765 0.98748 0.88597 0.87879 0.83573 0.84647 0.81833 1.16991 1.17969 1.14306 1.30548 1.15503 1.02227 1.66699 0.85629 1.01382 0.77428 0.70344 0.73244 1.93476 1.85564 1.75839 1.45152 1.93410 1.85062 1.76017 1.45520 1.55564 1.73903 1.31369 1.26561 1.20558 0.92895 0.91803 0.89280 0.87967 1.22292 0.99416 0.99193 0.97773 1.21558 0.96393 0.97664 0.99734 1.22148 0.90194 0.95269 0.99844 1.62215 1.03055 1.20681 1.39345 1.25084 0.92550 0.94144 0.98137 1.24093 0.98370 0.88488 0.91992 1.89680 1.31359 1.34494 1.74703 1.24064 0.86175 0.99207 0.93734 1.22353 0.99173 0.94854 0.91273 0.90927 0.76561 0.89091 0.92057 0.90529 0.91128 0.90705 0.94791 0.90565 0.88748 0.89321 0.89430 0.89130 0.94351 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.30 13.96 55.43 0.77 -22.53 16 2 C 0.15 4.35 5.47 -17.82 -0.10 4.25 16 3 Si 0.80 20.41 26.54 -169.99 -4.51 15.90 16 4 H -0.25 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.22 -5.76 5.60 56.52 0.32 -5.44 16 7 C -1.02 -27.39 10.12 30.60 0.31 -27.08 16 8 H 0.13 3.34 5.92 -52.48 -0.31 3.03 16 9 S 2.67 65.13 4.22 -107.50 -0.45 64.67 16 10 O -1.01 -26.74 16.02 -57.17 -0.92 -27.66 16 11 O -1.01 -26.51 16.17 -57.17 -0.92 -27.43 16 12 N -1.12 -20.43 5.48 -4.82 -0.03 -20.46 16 13 C 0.16 2.64 2.95 -67.85 -0.20 2.44 16 14 H 0.10 1.86 7.50 -51.92 -0.39 1.47 16 15 C -0.15 -2.23 5.61 -26.61 -0.15 -2.38 16 16 C -0.12 -1.40 6.09 -26.66 -0.16 -1.57 16 17 C 0.05 0.55 5.29 -3.83 -0.02 0.53 16 18 N -0.53 -6.05 4.63 -234.61 -1.09 -7.14 16 19 C 0.01 0.10 3.44 -66.63 -0.23 -0.13 16 20 C 0.05 0.49 8.91 37.61 0.33 0.82 16 21 O -0.38 -4.50 12.45 -35.23 -0.44 -4.94 16 22 C 0.05 0.42 7.71 37.61 0.29 0.71 16 23 C 0.05 0.68 4.97 -3.83 -0.02 0.66 16 24 H 0.28 7.23 8.31 -40.82 -0.34 6.90 16 25 H 0.40 6.22 8.84 -34.47 -0.30 5.91 16 26 H 0.09 1.63 5.83 -51.93 -0.30 1.32 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.66 6.80 -51.93 -0.35 0.30 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.81 7.81 -51.93 -0.41 0.40 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -32.38 312.17 -8.33 -40.71 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.51 Total: 5.91 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 0.06 Total: -21.74 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.34 Total: -50.13 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -2.28 Total: -60.02 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.51 Total: 15.90 kcal Atomic # 16 Polarization: 65.13 SS G_CDS: -0.45 Total: 64.67 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.38 -8.33 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.675 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds