Wall clock time and date at job start Tue Mar 31 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47444 * 299.99731 * 3 2 1 6 6 H 1.48501 * 109.46998 * 60.00163 * 3 2 1 7 7 C 1.38946 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00020 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00488 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99571 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00389 * 180.02562 * 10 9 7 13 13 H 1.08998 * 109.50395 * 304.91208 * 12 10 9 14 14 C 1.53103 * 109.50713 * 64.99477 * 12 10 9 15 15 N 1.47013 * 109.25987 * 176.78244 * 14 12 10 16 16 C 1.46890 * 111.00431 * 177.61022 * 15 14 12 17 17 C 1.50701 * 109.47107 * 57.59183 * 16 15 14 18 18 C 1.38242 * 119.99811 * 269.72950 * 17 16 15 19 19 C 1.38238 * 119.99782 * 179.80608 * 18 17 16 20 20 C 1.38232 * 119.99804 * 0.40201 * 19 18 17 21 21 C 1.38234 * 120.00428 * 359.84928 * 20 19 18 22 22 C 1.38231 * 120.00199 * 89.99988 * 17 16 15 23 23 C 1.47016 * 110.75310 * 301.39294 * 15 14 12 24 24 C 1.53095 * 109.26218 * 58.61097 * 23 15 14 25 25 O 1.43020 * 109.29124 * 303.13039 * 24 23 15 26 26 H 0.96999 * 120.00338 * 0.02562 * 1 2 3 27 27 H 0.97005 * 120.00044 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.50161 * 56.85002 * 14 12 10 29 29 H 1.08990 * 109.50823 * 296.72497 * 14 12 10 30 30 H 1.09000 * 109.47667 * 177.58802 * 16 15 14 31 31 H 1.09000 * 109.47266 * 297.59319 * 16 15 14 32 32 H 1.07999 * 120.00241 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.99971 * 180.23012 * 19 18 17 34 34 H 1.08005 * 119.99991 * 179.83136 * 20 19 18 35 35 H 1.08000 * 120.00449 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.99903 * 359.97438 * 22 17 16 37 37 H 1.09008 * 109.50469 * 298.67676 * 23 15 14 38 38 H 1.09003 * 109.54191 * 178.57085 * 23 15 14 39 39 H 1.09002 * 109.50646 * 63.08857 * 24 23 15 40 40 H 1.09003 * 109.50955 * 183.17410 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 1 0.5523 -4.8843 0.8411 14 6 0.4604 -5.0004 -1.3093 15 7 -0.2104 -6.3083 -1.3377 16 6 -1.0207 -6.4581 -2.5537 17 6 -0.1433 -6.2851 -3.7666 18 6 0.0298 -5.0307 -4.3213 19 6 0.8379 -4.8714 -5.4315 20 6 1.4662 -5.9677 -5.9920 21 6 1.2890 -7.2228 -5.4405 22 6 0.4840 -7.3815 -4.3279 23 6 0.7687 -7.3986 -1.2194 24 6 1.5489 -7.2370 0.0879 25 8 2.1691 -5.9485 0.1119 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 1.1457 -4.9244 -2.1536 29 1 -0.2848 -4.2076 -1.3723 30 1 -1.4716 -7.4503 -2.5700 31 1 -1.8059 -5.7021 -2.5625 32 1 -0.4641 -4.1748 -3.8856 33 1 0.9761 -3.8908 -5.8626 34 1 2.0954 -5.8437 -6.8610 35 1 1.7796 -8.0794 -5.8786 36 1 0.3457 -8.3621 -3.8970 37 1 1.4590 -7.3610 -2.0622 38 1 0.2489 -8.3567 -1.2171 39 1 0.8663 -7.3282 0.9328 40 1 2.3141 -8.0106 0.1531 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132391192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:46 Heat of formation + Delta-G solvation = -68.522241 kcal Electronic energy + Delta-G solvation = -23495.068707 eV Core-core repulsion = 20080.826966 eV Total energy + Delta-G solvation = -3414.241740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44226 -40.24562 -39.17855 -36.87204 -35.99044 -33.57510 -32.41402 -32.36433 -31.71291 -29.13418 -27.30392 -25.58998 -25.26529 -23.37779 -22.61169 -21.44579 -21.06798 -20.06147 -18.21770 -17.72487 -17.37331 -17.06037 -16.59770 -16.48802 -16.23313 -15.81227 -15.69954 -15.66113 -15.43168 -14.92306 -14.59082 -14.35355 -13.91525 -13.72586 -13.54177 -13.40300 -13.02790 -12.87385 -12.55815 -12.47867 -12.36710 -12.24408 -12.12930 -11.87999 -11.67579 -11.58369 -10.72268 -10.36660 -10.08818 -9.83812 -9.73733 -9.46657 -8.51272 -6.01132 0.37025 0.45553 1.33772 1.41122 1.55281 1.88050 2.19134 2.52699 2.67725 2.94571 3.14928 3.43801 3.75452 3.82551 3.88566 3.96337 4.07376 4.11168 4.15613 4.23441 4.30956 4.40089 4.48406 4.53835 4.58242 4.72884 4.75124 4.79126 4.86796 4.98368 5.09106 5.10413 5.37247 5.50567 5.55421 5.58454 5.81489 5.87210 5.94041 6.08228 6.16034 6.53440 7.05651 7.43737 7.99384 8.65985 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.004928 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.978130 B = 5680.661644 C = 6616.616961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.994 3.006 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.078 0.922 9 N -0.556 5.556 10 C 0.440 3.560 11 O -0.625 6.625 12 C 0.100 3.900 13 H 0.092 0.908 14 C 0.045 3.955 15 N -0.518 5.518 16 C 0.093 3.907 17 C -0.131 4.131 18 C -0.126 4.126 19 C -0.139 4.139 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.113 4.113 23 C 0.014 3.986 24 C 0.051 3.949 25 O -0.390 6.390 26 H 0.281 0.719 27 H 0.399 0.601 28 H 0.031 0.969 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.038 0.962 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 -15.973 -8.678 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.206 4.206 3 Si 0.817 3.183 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.193 5.193 10 C 0.227 3.773 11 O -0.512 6.512 12 C 0.038 3.962 13 H 0.110 0.890 14 C -0.084 4.084 15 N -0.241 5.241 16 C -0.034 4.034 17 C -0.133 4.133 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.132 4.132 23 C -0.114 4.114 24 C -0.025 4.025 25 O -0.308 6.308 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.056 0.944 38 H 0.141 0.859 39 H 0.089 0.911 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.472 -15.825 -8.216 18.651 hybrid contribution 0.373 1.248 -0.721 1.488 sum -5.099 -14.577 -8.937 17.843 Atomic orbital electron populations 1.69666 1.06766 1.29546 1.49340 1.26037 0.96566 1.02262 0.95733 0.84866 0.77975 0.76885 0.78573 1.19962 1.19291 1.19262 1.19699 0.92716 0.83682 1.50600 0.90437 1.41769 1.09313 1.04152 1.64060 1.20335 0.87939 0.85645 0.83430 1.90495 1.16029 1.87827 1.56824 1.21674 0.89919 0.85652 0.98972 0.89040 1.22479 0.97018 0.93561 0.95355 1.62682 1.23633 1.01092 1.36668 1.21405 0.94098 1.05034 0.82855 1.20779 1.00548 0.93582 0.98389 1.21283 0.99347 0.97396 0.96474 1.21404 0.97778 0.99739 0.96810 1.21461 0.99600 0.92939 1.00713 1.21500 0.98729 0.97909 0.96504 1.21355 0.96920 0.98860 0.96019 1.22966 0.94596 0.96179 0.97625 1.23055 0.98066 0.84055 0.97355 1.88116 1.33533 1.14709 1.94470 0.90984 0.76695 0.95074 0.89373 0.86678 0.89335 0.86976 0.85824 0.84400 0.83648 0.83792 0.94396 0.85878 0.91089 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.79 13.05 21.66 0.28 -48.50 16 2 C -0.01 -0.28 5.50 84.93 0.47 0.19 16 3 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.34 -19.60 9.68 84.04 0.81 -18.79 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.56 -29.62 5.25 -306.98 -1.61 -31.23 16 10 C 0.44 23.04 7.13 87.66 0.63 23.66 16 11 O -0.63 -38.62 16.08 15.87 0.26 -38.36 16 12 C 0.10 4.01 3.22 29.88 0.10 4.10 16 13 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 14 C 0.04 1.53 4.10 86.32 0.35 1.89 16 15 N -0.52 -13.15 4.94 -899.80 -4.44 -17.59 16 16 C 0.09 1.92 5.58 85.56 0.48 2.40 16 17 C -0.13 -3.11 4.01 -19.86 -0.08 -3.19 16 18 C -0.13 -3.48 7.95 22.27 0.18 -3.30 16 19 C -0.14 -3.67 10.05 22.27 0.22 -3.45 16 20 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 21 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 22 C -0.11 -2.30 8.03 22.27 0.18 -2.12 16 23 C 0.01 0.32 5.13 86.31 0.44 0.76 16 24 C 0.05 1.33 7.01 72.01 0.50 1.83 16 25 O -0.39 -15.57 10.01 -130.02 -1.30 -16.87 16 26 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.40 19.91 7.77 -92.70 -0.72 19.19 16 28 H 0.03 1.22 6.23 -2.39 -0.01 1.20 16 29 H 0.09 3.00 8.01 -2.39 -0.02 2.98 16 30 H 0.12 1.70 8.05 -2.39 -0.02 1.69 16 31 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 32 H 0.11 3.21 8.03 -2.91 -0.02 3.19 16 33 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.14 2.12 8.03 -2.91 -0.02 2.09 16 37 H 0.04 0.97 6.33 -2.38 -0.02 0.95 16 38 H 0.12 1.80 8.12 -2.39 -0.02 1.78 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.09 330.40 0.27 -72.82 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.33 Total: 35.82 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 4.73 Total: -1.09 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -5.77 Total: -97.32 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -1.05 Total: -55.23 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.09 0.27 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132391192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.301 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds