Wall clock time and date at job start Tue Mar 31 2020 02:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46846 * 177.18771 * 3 2 1 5 5 C 1.36939 * 119.99406 * 264.34980 * 4 3 2 6 6 H 1.08005 * 119.99825 * 196.60036 * 5 4 3 7 7 C 1.38809 * 120.00594 * 16.59925 * 5 4 3 8 8 N 1.31624 * 119.99515 * 22.38439 * 7 5 4 9 9 Si 1.86804 * 120.00304 * 202.39411 * 7 5 4 10 10 H 1.48499 * 109.46956 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47238 * 119.99596 * 9 7 5 12 12 H 1.48500 * 109.46618 * 239.99557 * 9 7 5 13 13 C 1.46499 * 120.00237 * 84.35370 * 4 3 2 14 14 C 1.50699 * 109.47115 * 269.99312 * 13 4 3 15 15 O 1.21284 * 119.99835 * 0.02562 * 14 13 4 16 16 N 1.34768 * 120.00083 * 179.97438 * 14 13 4 17 17 C 1.46506 * 120.00330 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47134 * 179.97438 * 17 16 14 19 19 C 1.38240 * 119.97973 * 269.72272 * 18 17 16 20 20 C 1.38197 * 120.02932 * 179.73086 * 19 18 17 21 21 C 1.38464 * 119.97095 * 0.56938 * 20 19 18 22 22 F 1.35100 * 120.02245 * 179.68548 * 21 20 19 23 23 C 1.38458 * 119.94708 * 359.70521 * 21 20 19 24 24 C 1.38198 * 119.97570 * 359.97438 * 23 21 20 25 25 H 4.40635 * 5.51465 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47031 * 57.18295 * 3 2 1 27 27 H 1.08999 * 109.47124 * 297.18123 * 3 2 1 28 28 H 0.97006 * 119.99447 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46812 * 149.99894 * 13 4 3 30 30 H 1.08996 * 109.47089 * 29.99891 * 13 4 3 31 31 H 0.97004 * 120.00236 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.46924 * 59.99541 * 17 16 14 33 33 H 1.09006 * 109.46634 * 300.00278 * 17 16 14 34 34 H 1.07998 * 119.98225 * 359.97438 * 19 18 17 35 35 H 1.07997 * 120.01680 * 180.25947 * 20 19 18 36 36 H 1.08004 * 120.00924 * 179.97438 * 23 21 20 37 37 H 1.08003 * 119.98101 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3805 -0.0678 5 6 3.4717 1.9285 -1.2763 6 1 4.0725 2.8252 -1.3135 7 6 3.0422 1.3316 -2.4537 8 7 1.9894 0.5417 -2.4449 9 14 3.9584 1.6492 -4.0503 10 1 5.0975 2.5665 -3.7932 11 1 4.4694 0.3644 -4.5919 12 1 3.0362 2.2697 -5.0351 13 6 3.2598 2.1738 1.1573 14 6 1.9698 2.9092 1.4146 15 8 1.0368 2.7827 0.6501 16 7 1.8526 3.7067 2.4946 17 6 0.5983 4.4212 2.7450 18 6 0.7277 5.2364 4.0058 19 6 0.3808 4.6836 5.2245 20 6 0.5043 5.4284 6.3820 21 6 0.9646 6.7328 6.3194 22 9 1.0798 7.4640 7.4496 23 6 1.3064 7.2873 5.0976 24 6 1.1883 6.5383 3.9422 25 1 -1.0502 -0.0004 -0.0002 26 1 3.0096 -0.5561 -0.8636 27 1 3.0096 -0.4686 0.9142 28 1 1.6894 0.1243 -3.2676 29 1 4.0711 2.8927 1.0427 30 1 3.4754 1.5135 1.9972 31 1 2.5987 3.8077 3.1063 32 1 -0.2128 3.7022 2.8593 33 1 0.3827 5.0818 1.9052 34 1 0.0168 3.6680 5.2724 35 1 0.2372 4.9950 7.3344 36 1 1.6652 8.3048 5.0476 37 1 1.4545 6.9709 2.9891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281521246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:01 Heat of formation + Delta-G solvation = 35.985060 kcal Electronic energy + Delta-G solvation = -21924.728245 eV Core-core repulsion = 18391.557976 eV Total energy + Delta-G solvation = -3533.170269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.14102 -39.62407 -38.48993 -35.70250 -34.22239 -31.46274 -31.40715 -31.35463 -30.74781 -27.49698 -25.96357 -25.23497 -23.30816 -22.10596 -21.39019 -19.69722 -17.93489 -17.42286 -16.70560 -16.62726 -16.40390 -15.85052 -15.48836 -15.19311 -14.66220 -14.59760 -14.07278 -13.86081 -13.69594 -13.52245 -13.14124 -13.05926 -12.49552 -12.25023 -12.16048 -11.68877 -11.40816 -11.27337 -11.20216 -10.86590 -10.68854 -10.22199 -9.97478 -9.38451 -9.24251 -8.85172 -8.71644 -8.59583 -8.44797 -8.25002 -6.98160 -5.73168 -3.15031 0.81024 0.96378 3.21744 3.39195 3.46833 3.49182 3.63315 3.96105 3.99648 4.35853 4.46026 4.54578 4.56549 4.64162 4.67537 5.02248 5.02432 5.38737 5.51507 5.60082 5.66141 5.71719 5.81012 5.84559 5.94641 6.00136 6.05826 6.14151 6.27938 6.34187 6.61058 6.74379 6.96679 7.27082 7.57648 7.76692 8.11196 8.31640 9.09645 9.19517 9.45790 9.77950 10.21748 11.29202 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.003248 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.966369 B = 8619.466625 C = 9138.658077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.095 4.095 3 C 0.269 3.731 4 N -0.558 5.558 5 C -0.266 4.266 6 H 0.076 0.924 7 C 0.008 3.992 8 N -0.876 5.876 9 Si 0.901 3.099 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.292 1.292 13 C 0.129 3.871 14 C 0.464 3.536 15 O -0.494 6.494 16 N -0.748 5.748 17 C 0.161 3.839 18 C -0.106 4.106 19 C -0.074 4.074 20 C -0.156 4.156 21 C 0.096 3.904 22 F -0.142 7.142 23 C -0.155 4.155 24 C -0.074 4.074 25 H 0.184 0.816 26 H 0.098 0.902 27 H 0.035 0.965 28 H 0.253 0.747 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.391 0.609 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 8.510 16.919 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.098 4.098 3 C 0.144 3.856 4 N -0.275 5.275 5 C -0.395 4.395 6 H 0.094 0.906 7 C -0.193 4.193 8 N -0.517 5.517 9 Si 0.731 3.269 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.219 1.219 13 C -0.003 4.003 14 C 0.248 3.752 15 O -0.364 6.364 16 N -0.405 5.405 17 C 0.037 3.963 18 C -0.107 4.107 19 C -0.092 4.092 20 C -0.174 4.174 21 C 0.077 3.923 22 F -0.121 7.121 23 C -0.174 4.174 24 C -0.092 4.092 25 H 0.201 0.799 26 H 0.115 0.885 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.224 0.776 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.638 8.293 16.140 18.157 hybrid contribution 0.073 0.705 -0.413 0.820 sum -0.565 8.998 15.727 18.128 Atomic orbital electron populations 1.23951 0.95122 1.04099 1.07606 1.23925 0.94999 0.96658 0.94203 1.17885 0.83255 0.85687 0.98746 1.44253 1.72749 1.08306 1.02211 1.19210 1.26325 1.11523 0.82485 0.90634 1.24955 0.96130 1.00404 0.97761 1.70212 1.21065 1.34045 1.26406 0.86254 0.79388 0.77469 0.83806 1.20277 1.21491 1.21933 1.21082 0.93058 0.94750 0.91430 1.23507 0.93195 0.78965 0.79538 1.90769 1.40116 1.60835 1.44659 1.46642 1.15024 1.49853 1.29011 1.20033 0.88916 0.94488 0.92874 1.20140 1.00304 0.94844 0.95385 1.21019 0.97373 0.99947 0.90909 1.21154 1.03018 0.93090 1.00175 1.17771 1.01884 0.90388 0.82279 1.91497 1.93863 1.77089 1.49642 1.21159 1.03551 1.01455 0.91252 1.21032 0.96647 0.93329 0.98214 0.79914 0.88455 0.94704 0.93672 0.90479 0.91325 0.77620 0.91248 0.91222 0.84710 0.84699 0.84691 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.20 18.78 29.55 0.56 -6.64 16 2 C -0.10 -2.44 10.03 -37.12 -0.37 -2.81 16 3 C 0.27 6.45 5.45 -6.83 -0.04 6.41 16 4 N -0.56 -13.53 2.09 -177.95 -0.37 -13.91 16 5 C -0.27 -7.16 9.66 -15.06 -0.15 -7.31 16 6 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 7 C 0.01 0.22 4.85 -17.43 -0.08 0.13 16 8 N -0.88 -25.51 9.50 55.49 0.53 -24.98 16 9 Si 0.90 21.60 29.61 -169.99 -5.03 16.57 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 C 0.13 2.46 6.18 -5.19 -0.03 2.43 16 14 C 0.46 9.18 7.81 -10.99 -0.09 9.10 16 15 O -0.49 -12.51 14.44 5.55 0.08 -12.43 16 16 N -0.75 -10.77 5.55 -61.47 -0.34 -11.11 16 17 C 0.16 2.14 5.80 -5.19 -0.03 2.11 16 18 C -0.11 -1.10 5.25 -104.62 -0.55 -1.65 16 19 C -0.07 -0.70 9.70 -39.60 -0.38 -1.08 16 20 C -0.16 -1.40 10.03 -39.51 -0.40 -1.80 16 21 C 0.10 0.95 7.30 -39.42 -0.29 0.66 16 22 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 23 C -0.16 -1.42 10.03 -39.51 -0.40 -1.81 16 24 C -0.07 -0.70 9.70 -39.59 -0.38 -1.09 16 25 H 0.18 4.00 7.80 -54.08 -0.42 3.58 16 26 H 0.10 2.52 6.41 -51.93 -0.33 2.18 16 27 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.08 1.33 8.02 -51.93 -0.42 0.91 16 30 H 0.07 1.10 7.95 -51.93 -0.41 0.68 16 31 H 0.39 4.47 8.46 -40.82 -0.35 4.12 16 32 H 0.07 0.99 8.08 -51.93 -0.42 0.58 16 33 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -33.92 331.57 -7.16 -41.08 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.42 Total: 4.62 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.63 Total: -3.37 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.19 Total: -50.00 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.92 -7.16 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281521246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.066 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds