Wall clock time and date at job start Tue Mar 31 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 N 1.46496 * 109.47400 * 179.97438 * 3 2 1 5 5 C 1.36822 * 119.99775 * 264.47313 * 4 3 2 6 6 H 1.07998 * 119.99764 * 131.94930 * 5 4 3 7 7 C 1.39077 * 119.99789 * 311.93665 * 5 4 3 8 8 N 1.31336 * 120.00191 * 3.31839 * 7 5 4 9 9 Si 1.86800 * 119.99763 * 183.31325 * 7 5 4 10 10 H 1.48503 * 109.47249 * 90.00270 * 9 7 5 11 11 H 1.48502 * 109.47065 * 210.00505 * 9 7 5 12 12 H 1.48501 * 109.47339 * 330.00273 * 9 7 5 13 13 C 1.34779 * 120.00366 * 84.46777 * 4 3 2 14 14 O 1.21594 * 119.99382 * 4.80127 * 13 4 3 15 15 C 1.47768 * 120.00124 * 184.79480 * 13 4 3 16 16 C 1.39531 * 119.52651 * 174.15240 * 15 13 4 17 17 C 1.38418 * 119.25090 * 179.97438 * 16 15 13 18 18 C 1.38885 * 118.33802 * 0.02562 * 17 16 15 19 19 N 1.38732 * 133.56178 * 179.97438 * 18 17 16 20 20 H 0.97001 * 125.84954 * 359.97438 * 19 18 17 21 21 C 1.34644 * 108.30652 * 179.97438 * 19 18 17 22 22 O 1.21657 * 125.11736 * 179.97438 * 21 19 18 23 23 N 1.34592 * 109.76286 * 0.02562 * 21 19 18 24 24 H 0.97003 * 125.76486 * 180.02562 * 23 21 19 25 25 C 1.38931 * 108.47163 * 359.97438 * 23 21 19 26 26 N 1.31861 * 133.03669 * 180.32691 * 25 23 21 27 27 H 1.09004 * 109.47009 * 59.99884 * 1 2 3 28 28 H 1.09003 * 109.47557 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47125 * 299.99910 * 1 2 3 30 30 H 1.08995 * 109.47309 * 239.99477 * 2 1 3 31 31 H 1.09004 * 109.47009 * 120.00116 * 2 1 3 32 32 H 1.09003 * 109.46883 * 59.99942 * 3 2 1 33 33 H 1.08991 * 109.47102 * 300.00314 * 3 2 1 34 34 H 0.97000 * 120.00129 * 179.97438 * 8 7 5 35 35 H 1.08004 * 120.37181 * 359.97438 * 16 15 13 36 36 H 1.07995 * 120.83289 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1885 1.5568 1.1803 6 1 4.9999 0.8793 1.4021 7 6 3.8387 2.5455 2.0937 8 7 2.8111 3.3274 1.8537 9 14 4.8303 2.7612 3.6620 10 1 5.9353 3.7234 3.4207 11 1 3.9481 3.2802 4.7380 12 1 5.3957 1.4514 4.0744 13 6 4.1794 1.3298 -1.1608 14 8 3.5751 1.3160 -2.2158 15 6 5.6532 1.2231 -1.1520 16 6 6.3325 0.9840 -2.3472 17 6 7.7131 0.8856 -2.3324 18 6 8.3714 1.0296 -1.1180 19 7 9.7067 0.9910 -0.7439 20 1 10.4590 0.8414 -1.3377 21 6 9.7798 1.1966 0.5847 22 8 10.8088 1.2235 1.2332 23 7 8.5430 1.3667 1.0876 24 1 8.3274 1.5308 2.0190 25 6 7.6275 1.2690 0.0472 26 7 6.3133 1.3622 -0.0068 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 2.5669 4.0167 2.4909 35 1 5.7872 0.8769 -3.2732 36 1 8.2646 0.7006 -3.2424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283107607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:06 Heat of formation + Delta-G solvation = 15.477354 kcal Electronic energy + Delta-G solvation = -23224.599500 eV Core-core repulsion = 19710.459912 eV Total energy + Delta-G solvation = -3514.139588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.43905 -39.40909 -37.97834 -36.04418 -35.16080 -34.26223 -32.86080 -31.63802 -30.97813 -29.11221 -25.97422 -24.90722 -23.46774 -22.97275 -22.50713 -20.90528 -19.50798 -18.43263 -18.07709 -17.39748 -16.40186 -16.34787 -15.93274 -15.24860 -14.97180 -14.40042 -14.38246 -14.09052 -13.87338 -13.27100 -13.17632 -13.11805 -12.62842 -12.33725 -11.57871 -11.53658 -11.44846 -11.26573 -11.01833 -10.83421 -10.74005 -10.69401 -10.41263 -10.29481 -9.74933 -9.31279 -9.07210 -9.01580 -8.41439 -7.87928 -7.37551 -6.32830 -4.07848 1.09031 1.39387 2.44301 2.90586 3.11309 3.17252 3.19199 3.22478 3.52389 4.06972 4.44953 4.47654 4.53944 4.84661 5.06333 5.15958 5.33751 5.55653 5.79023 5.83183 5.88595 5.97214 6.09739 6.32449 6.47411 6.52987 6.55325 6.60907 6.68350 6.81276 6.81733 7.10145 7.22553 7.41058 7.64614 7.97325 8.10848 8.28511 8.49497 9.05899 9.38291 9.82789 10.66090 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.006467 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.549704 B = 4328.485226 C = 5755.380083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.107 3.893 4 N -0.407 5.407 5 C -0.296 4.296 6 H 0.112 0.888 7 C 0.041 3.959 8 N -0.871 5.871 9 Si 0.918 3.082 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.507 3.493 14 O -0.599 6.599 15 C 0.135 3.865 16 C -0.118 4.118 17 C -0.078 4.078 18 C 0.034 3.966 19 N -0.636 5.636 20 H 0.432 0.568 21 C 0.691 3.309 22 O -0.561 6.561 23 N -0.626 5.626 24 H 0.438 0.562 25 C 0.284 3.716 26 N -0.396 5.396 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.054 0.946 34 H 0.269 0.731 35 H 0.153 0.847 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -4.535 -4.183 8.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.016 4.016 4 N -0.121 5.121 5 C -0.425 4.425 6 H 0.129 0.871 7 C -0.163 4.163 8 N -0.509 5.509 9 Si 0.745 3.255 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.296 3.704 14 O -0.485 6.485 15 C -0.007 4.007 16 C -0.141 4.141 17 C -0.106 4.106 18 C -0.072 4.072 19 N -0.282 5.282 20 H 0.274 0.726 21 C 0.391 3.609 22 O -0.437 6.437 23 N -0.275 5.275 24 H 0.281 0.719 25 C 0.047 3.953 26 N -0.112 5.112 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.171 0.829 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.684 -4.188 -3.327 7.805 hybrid contribution 1.245 0.163 0.324 1.296 sum 6.929 -4.025 -3.003 8.557 Atomic orbital electron populations 1.21642 0.96427 1.00417 1.01506 1.21844 0.94917 0.99315 1.01213 1.21724 0.80945 0.94519 1.04370 1.43464 1.05126 1.58448 1.05094 1.19964 1.14654 1.14302 0.93626 0.87100 1.25563 0.96079 0.94923 0.99775 1.69676 1.25090 1.19352 1.36735 0.86072 0.79801 0.78854 0.80811 1.20241 1.21031 1.19239 1.17952 0.84568 0.83310 0.84605 1.90647 1.68266 1.58530 1.31105 1.21243 0.95305 0.97174 0.86993 1.21846 0.92742 0.99438 1.00028 1.20347 0.93789 1.01739 0.94751 1.19014 0.84078 1.07784 0.96274 1.42721 1.07119 1.69671 1.08720 0.72629 1.15753 0.83345 0.80085 0.81740 1.91084 1.30005 1.60045 1.62555 1.42778 1.04653 1.69037 1.11003 0.71928 1.18741 0.89659 1.01463 0.85435 1.67947 1.02911 1.11907 1.28452 0.93105 0.93676 0.92866 0.93037 0.92342 0.86413 0.92787 0.91991 0.82888 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.91 37.15 0.37 -1.92 16 2 C -0.13 -2.63 6.22 -26.73 -0.17 -2.80 16 3 C 0.11 2.46 4.88 -4.04 -0.02 2.44 16 4 N -0.41 -9.90 2.51 -115.92 -0.29 -10.19 16 5 C -0.30 -7.21 7.45 -15.01 -0.11 -7.33 16 6 H 0.11 2.66 5.97 -52.49 -0.31 2.35 16 7 C 0.04 1.02 5.35 -17.45 -0.09 0.92 16 8 N -0.87 -22.33 10.99 55.50 0.61 -21.72 16 9 Si 0.92 19.30 29.55 -169.99 -5.02 14.28 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 13 C 0.51 11.99 7.56 -12.36 -0.09 11.90 16 14 O -0.60 -14.90 15.96 5.28 0.08 -14.82 16 15 C 0.14 2.73 6.66 -83.02 -0.55 2.18 16 16 C -0.12 -1.87 9.61 -39.03 -0.38 -2.25 16 17 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 16 18 C 0.03 0.48 7.28 -83.73 -0.61 -0.12 16 19 N -0.64 -7.87 6.13 -14.23 -0.09 -7.96 16 20 H 0.43 3.83 8.96 -40.82 -0.37 3.46 16 21 C 0.69 10.61 9.20 -87.20 -0.80 9.80 16 22 O -0.56 -10.00 18.05 5.23 0.09 -9.91 16 23 N -0.63 -9.79 6.13 -15.78 -0.10 -9.89 16 24 H 0.44 6.35 8.96 -40.82 -0.37 5.98 16 25 C 0.28 4.86 8.42 -155.11 -1.31 3.56 16 26 N -0.40 -7.94 6.36 -8.84 -0.06 -8.00 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.12 2.88 5.52 -51.93 -0.29 2.60 16 33 H 0.05 1.29 7.53 -51.93 -0.39 0.90 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.15 2.28 7.63 -52.48 -0.40 1.88 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -30.02 311.37 -8.03 -38.05 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -3.79 Total: 10.46 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: -4.16 Total: 15.00 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.08 Total: -57.75 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.18 Total: -24.73 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.02 -8.03 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283107607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.530 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds