Wall clock time and date at job start Tue Mar 31 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34577 * 125.75239 * 2 1 4 4 N 1.30870 * 107.63028 * 179.97438 * 3 2 1 5 5 C 1.34547 * 107.26624 * 0.02562 * 4 3 2 6 6 C 1.47866 * 126.04695 * 180.02562 * 5 4 3 7 7 O 1.21556 * 120.00263 * 175.34671 * 6 5 4 8 8 N 1.34778 * 119.99988 * 355.35323 * 6 5 4 9 9 C 1.46493 * 120.00307 * 5.46279 * 8 6 5 10 10 C 1.50699 * 109.47216 * 276.03311 * 9 8 6 11 11 H 1.08003 * 119.99954 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00186 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99314 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00175 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47285 * 59.99904 * 14 12 10 16 16 H 1.48500 * 109.47345 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47238 * 299.99992 * 14 12 10 18 18 C 1.46505 * 119.99596 * 185.46843 * 8 6 5 19 19 C 1.50698 * 109.47023 * 84.98521 * 18 8 6 20 20 C 1.34508 * 125.79515 * 89.99713 * 19 18 8 21 21 C 1.41380 * 106.84298 * 179.78693 * 20 19 18 22 22 C 1.34516 * 106.84010 * 0.37576 * 21 20 19 23 23 O 1.34302 * 108.42103 * 359.62052 * 22 21 20 24 24 N 1.28853 * 125.74557 * 180.30713 * 2 1 3 25 25 H 1.08998 * 109.46818 * 90.00614 * 1 2 3 26 26 H 1.09004 * 109.47495 * 210.00167 * 1 2 3 27 27 H 1.09001 * 109.47574 * 330.00682 * 1 2 3 28 28 H 1.08011 * 126.18543 * 359.97350 * 3 2 1 29 29 H 1.09002 * 109.47062 * 36.02782 * 9 8 6 30 30 H 1.08997 * 109.47464 * 156.03138 * 9 8 6 31 31 H 0.97009 * 119.99560 * 179.97438 * 13 12 10 32 32 H 1.08994 * 109.47417 * 324.97533 * 18 8 6 33 33 H 1.09003 * 109.46843 * 204.97674 * 18 8 6 34 34 H 1.07998 * 126.57840 * 0.04206 * 20 19 18 35 35 H 1.08001 * 126.58205 * 180.22916 * 21 20 19 36 36 H 1.07999 * 125.78723 * 179.89041 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0922 0.0000 4 7 3.4951 0.6851 0.0006 5 6 3.4750 -0.6602 0.0003 6 6 4.6574 -1.5481 0.0013 7 8 4.5134 -2.7521 0.0864 8 7 5.8949 -1.0224 -0.0920 9 6 6.0767 0.4311 -0.0738 10 6 5.8714 0.9805 -1.4619 11 1 5.6301 0.3135 -2.2764 12 6 5.9916 2.3346 -1.6923 13 7 6.2859 3.1466 -0.7005 14 14 5.7364 3.0157 -3.4128 15 1 4.3619 2.6940 -3.8737 16 1 5.9208 4.4891 -3.3944 17 1 6.7244 2.4053 -4.3384 18 6 7.0584 -1.9047 -0.2118 19 6 7.2623 -2.2735 -1.6586 20 6 8.0146 -1.5965 -2.5446 21 6 7.9277 -2.2924 -3.7722 22 6 7.1207 -3.3485 -3.5651 23 8 6.7232 -3.3338 -2.2823 24 7 2.2177 -1.0458 -0.0056 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9164 2.1190 -0.0004 29 1 5.3514 0.8794 0.6053 30 1 7.0855 0.6669 0.2648 31 1 6.3709 4.0993 -0.8626 32 1 6.8906 -2.8087 0.3735 33 1 7.9443 -1.3902 0.1603 34 1 8.5802 -0.6965 -2.3536 35 1 8.4139 -2.0259 -4.6990 36 1 6.8433 -4.0858 -4.3039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290676928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:42 Heat of formation + Delta-G solvation = 102.286153 kcal Electronic energy + Delta-G solvation = -23523.295702 eV Core-core repulsion = 20012.920426 eV Total energy + Delta-G solvation = -3510.375276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.79216 -41.93832 -38.75725 -35.16768 -34.05246 -32.50287 -32.29014 -31.11194 -30.27747 -27.59551 -27.10640 -25.42782 -23.29311 -22.38234 -21.60144 -21.11751 -20.05524 -18.90976 -17.10245 -16.78994 -16.46027 -16.11266 -15.86428 -15.60668 -15.13887 -14.47543 -14.35877 -14.03613 -13.64064 -13.18486 -13.00397 -12.65798 -12.29043 -12.24600 -12.13930 -12.07714 -11.70956 -11.22584 -11.06502 -10.87330 -10.63828 -10.12347 -9.75145 -9.62162 -9.43945 -9.29607 -9.16201 -8.96671 -8.27408 -8.00118 -7.67296 -5.91934 -3.89854 1.96933 2.23707 2.67589 2.84572 3.17626 3.34348 3.38190 3.43442 3.57828 3.88757 4.19894 4.51359 4.67500 4.83948 5.05376 5.22411 5.28600 5.30010 5.44583 5.45160 5.57773 5.59612 5.85230 6.00136 6.35746 6.54395 6.58488 6.63477 6.76953 6.96567 6.98797 7.09395 7.53869 7.72769 7.79610 7.99566 8.25542 8.36239 8.62333 8.97182 9.10690 9.70288 11.17010 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.008197 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.723144 B = 3415.253063 C = 4905.263389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.317 5.317 3 C 0.167 3.833 4 N -0.405 5.405 5 C 0.154 3.846 6 C 0.615 3.385 7 O -0.547 6.547 8 N -0.577 5.577 9 C 0.230 3.770 10 C -0.493 4.493 11 H 0.049 0.951 12 C 0.072 3.928 13 N -0.892 5.892 14 Si 0.882 3.118 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.202 3.798 19 C -0.019 4.019 20 C -0.180 4.180 21 C -0.217 4.217 22 C -0.055 4.055 23 O -0.169 6.169 24 N -0.273 5.273 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.216 0.784 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 -4.458 0.406 7.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.114 5.114 3 C -0.128 4.128 4 N -0.128 5.128 5 C -0.125 4.125 6 C 0.400 3.600 7 O -0.423 6.423 8 N -0.308 5.308 9 C 0.111 3.889 10 C -0.532 4.532 11 H 0.068 0.932 12 C -0.129 4.129 13 N -0.532 5.532 14 Si 0.711 3.289 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.205 1.205 18 C 0.079 3.921 19 C -0.071 4.071 20 C -0.200 4.200 21 C -0.236 4.236 22 C -0.124 4.124 23 O -0.064 6.064 24 N -0.113 5.113 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.233 0.767 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.775 -5.544 0.661 8.033 hybrid contribution -0.454 1.212 -1.663 2.107 sum -6.229 -4.332 -1.002 7.653 Atomic orbital electron populations 1.22053 0.73683 1.05126 1.04202 1.47420 1.08561 1.04263 1.51136 1.26806 0.86551 0.95595 1.03898 1.72107 1.17334 1.08224 1.15114 1.23592 0.91337 0.90114 1.07500 1.16361 0.81549 0.85234 0.76905 1.90731 1.85921 1.14143 1.51511 1.48164 1.03365 1.10440 1.68858 1.19976 0.98491 0.71255 0.99172 1.21130 1.46469 0.92055 0.93526 0.93245 1.24676 0.95611 0.96683 0.95955 1.69910 1.49349 1.03504 1.30460 0.86828 0.78520 0.77632 0.85910 1.20875 1.21494 1.20531 1.19724 0.89984 0.95196 0.87233 1.22942 0.98493 0.88612 0.97043 1.21599 1.04341 1.01626 0.92429 1.21777 1.04476 0.97746 0.99648 1.23869 1.01512 1.02270 0.84713 1.84071 1.58408 1.42294 1.21660 1.74219 1.03290 1.13264 1.20486 0.89952 0.88867 0.88562 0.76735 0.90652 0.95152 0.93197 0.89388 0.87135 0.83227 0.84159 0.78992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.38 59.85 0.68 1.49 16 2 N -0.32 -5.00 3.72 -69.39 -0.26 -5.25 16 3 C 0.17 2.83 12.62 -90.49 -1.14 1.69 16 4 N -0.41 -8.92 6.97 -12.36 -0.09 -9.00 16 5 C 0.15 3.51 7.56 -156.36 -1.18 2.33 16 6 C 0.62 14.62 7.59 -12.32 -0.09 14.52 16 7 O -0.55 -13.68 16.72 5.32 0.09 -13.59 16 8 N -0.58 -12.94 2.47 -177.55 -0.44 -13.38 16 9 C 0.23 5.60 4.80 -5.20 -0.02 5.57 16 10 C -0.49 -13.03 7.93 -34.44 -0.27 -13.30 16 11 H 0.05 1.41 7.81 -52.48 -0.41 1.00 16 12 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 13 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 14 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.20 3.87 5.98 -5.19 -0.03 3.84 16 19 C -0.02 -0.39 6.86 -35.63 -0.24 -0.63 16 20 C -0.18 -3.47 10.81 -39.71 -0.43 -3.90 16 21 C -0.22 -3.75 10.91 -39.70 -0.43 -4.18 16 22 C -0.06 -0.93 12.09 29.42 0.36 -0.57 16 23 O -0.17 -3.41 10.65 5.69 0.06 -3.35 16 24 N -0.27 -5.58 12.09 32.07 0.39 -5.20 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.22 2.66 8.06 -52.48 -0.42 2.24 16 29 H 0.08 1.95 5.66 -51.93 -0.29 1.66 16 30 H 0.03 0.75 7.78 -51.93 -0.40 0.35 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.09 1.60 7.50 -51.93 -0.39 1.21 16 33 H 0.11 1.81 7.79 -51.93 -0.40 1.41 16 34 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 35 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.19 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -35.52 322.24 -6.58 -42.10 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.00 Total: 1.63 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -2.91 Total: 8.68 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.34 Total: -56.66 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.15 Total: -16.94 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.52 -6.58 -42.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290676928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.385 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds