Wall clock time and date at job start Tue Mar 31 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99536 * 2 1 4 4 H 1.48499 * 109.47077 * 269.99924 * 3 2 1 5 5 H 1.48499 * 109.47358 * 30.00418 * 3 2 1 6 6 H 1.48500 * 109.46986 * 150.00311 * 3 2 1 7 7 C 1.38949 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00228 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99593 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00290 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99525 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00460 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47189 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00100 * 179.97438 * 13 12 10 15 15 O 1.21481 * 119.99813 * 0.02562 * 14 13 12 16 16 C 1.48454 * 120.00090 * 179.97438 * 14 13 12 17 17 C 1.39534 * 120.55233 * 179.97438 * 16 14 13 18 18 C 1.38759 * 118.26816 * 180.02562 * 17 16 14 19 19 N 1.32207 * 119.14441 * 359.75622 * 18 17 16 20 20 C 1.31887 * 121.03555 * 0.49858 * 19 18 17 21 21 C 1.50692 * 119.03782 * 179.76184 * 20 19 18 22 22 C 1.53000 * 117.50104 * 59.73544 * 21 20 19 23 23 C 1.53002 * 60.02940 * 252.47218 * 22 21 20 24 24 N 1.31578 * 121.91288 * 359.48719 * 20 19 18 25 25 H 0.97000 * 120.00602 * 359.97438 * 1 2 3 26 26 H 0.97002 * 120.00240 * 359.97438 * 9 7 2 27 27 H 1.08991 * 109.47453 * 59.99957 * 12 10 9 28 28 H 1.09001 * 109.46749 * 299.99735 * 12 10 9 29 29 H 0.97003 * 119.99693 * 359.97438 * 13 12 10 30 30 H 1.08011 * 120.86541 * 0.04715 * 17 16 14 31 31 H 1.07997 * 120.42548 * 180.02562 * 18 17 16 32 32 H 1.09008 * 115.54779 * 205.40158 * 21 20 19 33 33 H 1.09002 * 117.49833 * 359.97323 * 22 21 20 34 34 H 1.09002 * 117.49953 * 144.97364 * 22 21 20 35 35 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 36 36 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3703 0.0012 13 7 6.0492 -3.7515 0.0003 14 6 7.3743 -3.9978 0.0006 15 8 8.1637 -3.0744 0.0020 16 6 7.8692 -5.3974 0.0003 17 6 9.2385 -5.6655 0.0000 18 6 9.6486 -6.9912 -0.0008 19 7 8.7358 -7.9475 0.0036 20 6 7.4488 -7.6591 -0.0011 21 6 6.4470 -8.7848 -0.0012 22 6 6.4847 -9.7642 1.1736 23 6 6.9790 -10.2055 -0.2055 24 7 7.0143 -6.4172 -0.0003 25 1 -0.4851 0.8400 0.0004 26 1 3.8648 -0.3632 0.0004 27 1 5.9235 -1.8569 0.8916 28 1 5.9248 -1.8561 -0.8884 29 1 5.4188 -4.4888 -0.0005 30 1 9.9605 -4.8622 0.0008 31 1 10.6999 -7.2384 -0.0006 32 1 5.4721 -8.5465 -0.4267 33 1 7.2344 -9.5946 1.9465 34 1 5.5346 -10.1700 1.5213 35 1 8.0539 -10.3263 -0.3399 36 1 6.3539 -10.9013 -0.7652 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344123584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:31 Heat of formation + Delta-G solvation = 11.256146 kcal Electronic energy + Delta-G solvation = -21601.247589 eV Core-core repulsion = 18086.924956 eV Total energy + Delta-G solvation = -3514.322633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54351 -39.60880 -38.33764 -37.21753 -34.73808 -34.16124 -33.69182 -32.06169 -31.81842 -28.37452 -25.77465 -25.28131 -24.21408 -22.59794 -22.03608 -20.41624 -19.68482 -18.83930 -18.19847 -17.84431 -16.18500 -15.99353 -15.79272 -15.71315 -15.24272 -15.13135 -14.90791 -14.65193 -14.30189 -13.91134 -13.83201 -13.14298 -12.53255 -12.49192 -12.21912 -12.20209 -11.78436 -11.26398 -11.25883 -11.19543 -11.02465 -10.74679 -10.66198 -10.50037 -10.07767 -9.71791 -9.60560 -9.53054 -9.03931 -8.80148 -8.32402 -6.42204 -3.94952 0.25886 0.62814 2.59704 2.87827 2.97804 3.02567 3.11181 3.34256 3.41130 3.53104 3.68310 3.91555 4.01892 4.34087 4.49675 4.54591 4.61637 4.69468 4.75809 4.88054 5.11873 5.22786 5.36195 5.41234 5.58594 5.60592 5.69789 5.71899 5.83894 5.92352 5.99843 6.35989 6.58214 7.40698 7.51561 7.76165 7.96773 8.12158 8.43077 8.80042 9.27649 9.60839 10.69919 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.003179 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.928604 B = 8805.902048 C = 9876.935315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.574 6.574 12 C 0.103 3.897 13 N -0.680 5.680 14 C 0.566 3.434 15 O -0.534 6.534 16 C 0.143 3.857 17 C -0.179 4.179 18 C 0.152 3.848 19 N -0.506 5.506 20 C 0.351 3.649 21 C -0.105 4.105 22 C -0.154 4.154 23 C -0.153 4.153 24 N -0.485 5.485 25 H 0.276 0.724 26 H 0.374 0.626 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.424 0.576 30 H 0.162 0.838 31 H 0.178 0.822 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.515 -13.564 0.318 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.140 0.860 9 N -0.213 5.213 10 C 0.222 3.778 11 O -0.458 6.458 12 C -0.025 4.025 13 N -0.334 5.334 14 C 0.349 3.651 15 O -0.410 6.410 16 C -0.005 4.005 17 C -0.202 4.202 18 C -0.015 4.015 19 N -0.220 5.220 20 C 0.084 3.916 21 C -0.125 4.125 22 C -0.192 4.192 23 C -0.190 4.190 24 N -0.201 5.201 25 H 0.086 0.914 26 H 0.208 0.792 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.265 0.735 30 H 0.179 0.821 31 H 0.195 0.805 32 H 0.152 0.848 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.712 -14.131 0.320 22.661 hybrid contribution 0.875 1.944 0.005 2.132 sum 18.587 -12.187 0.325 22.228 Atomic orbital electron populations 1.69617 1.05715 1.27838 1.48079 1.25066 0.95533 0.98164 0.97121 0.86668 0.79903 0.83764 0.79134 1.19381 1.19971 1.19230 1.19449 0.78898 0.96847 1.48671 0.86024 1.42106 1.07714 1.06045 1.65438 1.19560 0.87870 0.85008 0.85338 1.90570 1.69015 1.30805 1.55364 1.21104 0.94319 0.83309 1.03742 1.45582 1.06690 1.10018 1.71078 1.17724 0.82887 0.86489 0.77965 1.90784 1.55701 1.43804 1.50739 1.21631 0.90845 0.93577 0.94462 1.22956 0.96950 0.99866 1.00455 1.23322 1.00036 0.87849 0.90312 1.68053 1.02426 1.38317 1.13237 1.22120 0.88957 0.90013 0.90495 1.20705 0.98047 0.87097 1.06640 1.22997 1.03535 1.00960 0.91697 1.23041 1.02723 0.94201 0.99070 1.68117 1.39800 0.99874 1.12309 0.91357 0.79243 0.89211 0.89206 0.73507 0.82069 0.80541 0.84763 0.88600 0.87663 0.87275 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.89 13.96 55.50 0.77 -24.11 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.86 27.74 -169.99 -4.71 14.14 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 7 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.58 -13.30 5.09 -10.97 -0.06 -13.35 16 10 C 0.44 9.62 7.85 -10.99 -0.09 9.54 16 11 O -0.57 -14.69 15.24 5.54 0.08 -14.60 16 12 C 0.10 1.77 6.15 -5.19 -0.03 1.74 16 13 N -0.68 -11.49 5.52 -62.24 -0.34 -11.84 16 14 C 0.57 8.97 7.83 -12.05 -0.09 8.87 16 15 O -0.53 -9.16 16.43 5.38 0.09 -9.07 16 16 C 0.14 1.98 6.79 -82.64 -0.56 1.42 16 17 C -0.18 -1.90 9.72 -38.91 -0.38 -2.28 16 18 C 0.15 1.36 11.31 -17.20 -0.19 1.16 16 19 N -0.51 -5.54 9.33 -10.74 -0.10 -5.64 16 20 C 0.35 4.35 7.31 -157.30 -1.15 3.20 16 21 C -0.10 -1.08 6.23 -91.74 -0.57 -1.65 16 22 C -0.15 -1.28 10.23 -26.73 -0.27 -1.56 16 23 C -0.15 -1.21 10.01 -26.69 -0.27 -1.48 16 24 N -0.48 -6.87 9.60 -7.32 -0.07 -6.94 16 25 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.42 7.58 6.82 -40.82 -0.28 7.30 16 30 H 0.16 1.45 7.74 -52.48 -0.41 1.04 16 31 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.36 8.14 -51.92 -0.42 0.94 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.90 7.54 -51.93 -0.39 0.51 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -32.81 323.20 -7.15 -39.96 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -3.83 Total: 15.18 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -3.86 Total: 11.41 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.20 Total: -61.88 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.67 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.81 -7.15 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344123584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.215 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds