Wall clock time and date at job start Tue Mar 31 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 C 1.50700 * 109.46705 * 85.02032 * 8 7 5 10 10 O 1.21284 * 120.00375 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99805 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00314 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47625 * 180.02562 * 12 11 9 14 14 O 1.21301 * 119.99766 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00557 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00105 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00337 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99949 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99678 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00299 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47087 * 59.99574 * 20 18 16 22 22 H 1.48501 * 109.46950 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46787 * 299.99971 * 20 18 16 24 24 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 26 26 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 27 27 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 28 28 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 29 29 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 30 30 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 31 31 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 32 32 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 33 33 H 1.08994 * 109.47063 * 205.01826 * 8 7 5 34 34 H 1.09001 * 109.46968 * 325.02719 * 8 7 5 35 35 H 0.97002 * 120.00139 * 0.02562 * 11 9 8 36 36 H 1.09010 * 109.46984 * 300.00180 * 12 11 9 37 37 H 1.08999 * 109.47250 * 59.99984 * 12 11 9 38 38 H 0.97002 * 119.99415 * 359.97438 * 15 13 12 39 39 H 0.97003 * 119.99553 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.00479 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 6 4.6923 -2.8742 1.4175 10 8 4.3675 -2.1509 2.3353 11 7 5.3738 -4.0105 1.6638 12 6 5.7217 -4.3725 3.0401 13 6 6.4763 -5.6769 3.0411 14 8 6.7010 -6.2484 1.9951 15 7 6.9016 -6.2086 4.2043 16 6 7.5876 -7.3955 4.2052 17 1 7.7876 -7.9044 3.2739 18 6 8.0255 -7.9439 5.4045 19 7 7.7816 -7.3250 6.5378 20 14 8.9609 -9.5609 5.4058 21 1 10.2019 -9.4154 4.6034 22 1 9.3129 -9.9279 6.8010 23 1 8.1107 -10.6249 4.8140 24 6 2.1980 -1.1970 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6584 2.1326 -0.0005 29 1 4.1205 2.1325 -0.0099 30 1 6.1418 -0.0013 -1.0291 31 1 6.1422 0.8902 0.5115 32 1 6.1421 -0.8897 0.5134 33 1 3.7091 -3.2829 -0.4319 34 1 5.2448 -2.3965 -0.5877 35 1 5.6340 -4.5889 0.9297 36 1 6.3461 -3.5915 3.4743 37 1 4.8108 -4.4788 3.6291 38 1 6.7222 -5.7513 5.0408 39 1 8.0877 -7.7077 7.3750 40 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344126057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:14 Heat of formation + Delta-G solvation = -68.685015 kcal Electronic energy + Delta-G solvation = -21931.616871 eV Core-core repulsion = 18517.368072 eV Total energy + Delta-G solvation = -3414.248799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22847 -39.04793 -38.02656 -34.49600 -34.24047 -33.65229 -32.43147 -31.39290 -29.38374 -28.82055 -26.83194 -24.89069 -24.40145 -22.28823 -20.80404 -19.84582 -19.45442 -18.11169 -17.10938 -16.20527 -16.05497 -15.58756 -15.41503 -15.11475 -14.68444 -14.50317 -14.11027 -13.94254 -13.83632 -13.41267 -13.17431 -13.09670 -12.82542 -12.79272 -12.23261 -12.19369 -12.02518 -11.71203 -11.64378 -11.56849 -11.11454 -11.01531 -10.98781 -10.51917 -10.32754 -9.75234 -9.64040 -8.81568 -8.78617 -8.64515 -8.41974 -8.11656 -6.52707 -3.94924 1.27689 1.35524 2.83639 3.12770 3.20455 3.23125 3.34773 3.72671 3.77202 4.10897 4.55452 4.68172 4.79581 4.86935 4.93101 5.08546 5.12135 5.14716 5.17124 5.34217 5.41787 5.45706 5.47325 5.55551 5.65366 5.66845 5.84523 5.90711 5.95459 6.04937 6.07095 6.16263 6.38417 6.52250 6.61025 6.68216 6.98204 7.44503 7.81348 7.90447 8.42591 8.47616 9.03051 9.37796 9.85655 10.64101 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036012 B = 0.002606 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.342228 B =10741.299813 C =10918.469824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.118 4.118 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.058 4.058 8 C -0.104 4.104 9 C 0.512 3.488 10 O -0.539 6.539 11 N -0.709 5.709 12 C 0.109 3.891 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.103 4.103 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.411 0.589 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 14.603 -12.454 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.073 4.073 6 C -0.174 4.174 7 C -0.058 4.058 8 C -0.144 4.144 9 C 0.297 3.703 10 O -0.416 6.416 11 N -0.364 5.364 12 C -0.018 4.018 13 C 0.213 3.787 14 O -0.485 6.485 15 N -0.183 5.183 16 C -0.435 4.435 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.121 4.121 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.622 14.657 -12.244 21.386 hybrid contribution 0.506 -0.831 0.408 1.055 sum -9.116 13.826 -11.837 20.356 Atomic orbital electron populations 1.20760 0.91357 1.02728 1.02020 1.19817 0.95909 0.93104 1.00643 1.20951 0.94140 0.97318 1.01328 1.20936 0.94134 0.97268 1.01227 1.19687 0.95923 0.92555 0.99139 1.20830 0.91387 1.03215 1.01938 1.19127 0.93307 0.93186 1.00225 1.20684 1.02162 0.96330 0.95230 1.20411 0.78037 0.80826 0.91008 1.90717 1.53653 1.51052 1.46178 1.45736 1.56943 1.23953 1.09754 1.20937 1.00263 0.96726 0.83914 1.19752 0.86031 0.87705 0.85176 1.90494 1.62620 1.63892 1.31477 1.41796 1.48192 1.21317 1.07034 1.19681 1.31001 0.97892 0.94968 0.87720 1.25333 0.97857 0.99899 0.94616 1.69611 1.45958 1.39808 0.98110 0.85867 0.79750 0.81092 0.77230 1.19755 1.20840 1.19763 1.20848 0.93259 0.97635 1.00385 0.91410 0.91594 0.91713 0.86373 0.86218 0.91185 0.91480 0.91440 0.87959 0.87791 0.75150 0.89940 0.89939 0.77031 0.91512 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.55 16 2 C -0.09 -1.04 5.88 -104.62 -0.62 -1.65 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.07 -0.88 5.88 -104.62 -0.62 -1.50 16 6 C -0.12 -1.24 9.22 36.01 0.33 -0.90 16 7 C -0.06 -0.73 4.37 -104.62 -0.46 -1.18 16 8 C -0.10 -1.21 5.15 -29.03 -0.15 -1.35 16 9 C 0.51 7.91 7.05 -10.99 -0.08 7.83 16 10 O -0.54 -10.19 16.03 5.55 0.09 -10.10 16 11 N -0.71 -11.55 5.53 -61.47 -0.34 -11.89 16 12 C 0.11 2.01 6.15 -5.20 -0.03 1.98 16 13 C 0.43 9.76 7.85 -10.99 -0.09 9.68 16 14 O -0.60 -15.16 15.24 5.54 0.08 -15.08 16 15 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 16 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 17 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.90 13.05 55.50 0.72 -23.17 16 20 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 24 C -0.10 -1.23 9.34 -39.58 -0.37 -1.60 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.07 0.80 6.16 -51.93 -0.32 0.48 16 33 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 34 H 0.10 1.00 6.99 -51.93 -0.36 0.64 16 35 H 0.41 6.46 7.44 -40.82 -0.30 6.15 16 36 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -32.03 344.51 -7.51 -39.54 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -5.46 Total: 14.16 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.72 Total: -0.45 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.33 Total: -48.72 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.17 Total: -25.18 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.03 -7.51 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344126057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.148 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds