Wall clock time and date at job start Tue Mar 31 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99981 * 2 1 4 4 H 1.48492 * 109.47280 * 270.00222 * 3 2 1 5 5 H 1.48499 * 109.46747 * 30.00461 * 3 2 1 6 6 H 1.48501 * 109.47005 * 149.99807 * 3 2 1 7 7 C 1.37884 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99727 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46895 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97784 * 124.97781 * 10 9 7 12 12 C 1.35246 * 107.85543 * 180.02562 * 11 10 9 13 13 C 1.40375 * 107.86783 * 0.02562 * 12 11 10 14 14 N 1.40402 * 125.96510 * 180.02562 * 13 12 11 15 15 C 1.33794 * 124.17999 * 5.01883 * 14 13 12 16 16 O 1.21537 * 123.76687 * 359.96850 * 15 14 13 17 17 N 1.34526 * 112.45767 * 179.97438 * 15 14 13 18 18 C 1.47310 * 106.62108 * 0.02562 * 17 15 14 19 19 H 1.09001 * 110.59818 * 118.52329 * 18 17 15 20 20 C 1.53002 * 110.59814 * 241.31989 * 18 17 15 21 21 C 1.52995 * 117.49878 * 7.28771 * 20 18 17 22 22 C 1.53006 * 117.49516 * 298.63102 * 20 18 17 23 23 C 1.34762 * 124.17605 * 184.72574 * 14 13 12 24 24 O 1.21239 * 127.15909 * 0.02562 * 23 14 13 25 25 N 1.31190 * 108.06340 * 0.02562 * 13 12 11 26 26 H 0.97000 * 120.00243 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46585 * 60.00686 * 9 7 2 28 28 H 1.08992 * 109.47132 * 300.00487 * 9 7 2 29 29 H 1.08006 * 126.07286 * 0.02562 * 11 10 9 30 30 H 1.07998 * 126.06115 * 180.26054 * 12 11 10 31 31 H 0.97003 * 126.68931 * 179.97438 * 17 15 14 32 32 H 1.08999 * 115.55142 * 152.96168 * 20 18 17 33 33 H 1.09002 * 117.49947 * 0.02562 * 21 20 18 34 34 H 1.08997 * 117.49979 * 145.01992 * 21 20 18 35 35 H 1.08995 * 117.49714 * 214.98065 * 22 20 18 36 36 H 1.08998 * 117.49688 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.2425 -4.6222 0.8944 12 6 3.2614 -5.4421 0.5500 13 6 3.8696 -4.9139 -0.5996 14 7 4.9674 -5.4656 -1.2792 15 6 5.5301 -6.6395 -0.9702 16 8 5.1483 -7.3539 -0.0642 17 7 6.5658 -6.9404 -1.7742 18 6 6.6974 -5.8248 -2.7272 19 1 7.6690 -5.3423 -2.6210 20 6 6.4961 -6.3161 -4.1622 21 6 6.0393 -7.7634 -4.3558 22 6 7.4772 -7.3625 -4.6947 23 6 5.5808 -4.8809 -2.3270 24 8 5.3000 -3.8193 -2.8409 25 7 3.2331 -3.8148 -0.9281 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 1.5783 -4.7522 1.7360 30 1 3.5528 -6.3452 1.0656 31 1 7.1187 -7.7364 -1.7338 32 1 6.1227 -5.5721 -4.8658 33 1 5.8818 -8.3654 -3.4609 34 1 5.3657 -7.9716 -5.1870 35 1 7.7490 -7.3070 -5.7488 36 1 8.2662 -7.7005 -4.0229 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348599585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:08 Heat of formation + Delta-G solvation = 56.162532 kcal Electronic energy + Delta-G solvation = -22732.408916 eV Core-core repulsion = 19220.033570 eV Total energy + Delta-G solvation = -3512.375346 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.85264 -41.93318 -39.83954 -38.68126 -37.03982 -35.89514 -34.98401 -32.85636 -31.15289 -29.39696 -28.73370 -25.69752 -24.62958 -23.72718 -23.22871 -22.10622 -21.28411 -20.77331 -19.08049 -18.71998 -18.35099 -18.07794 -17.48781 -16.97212 -16.77886 -16.30011 -16.11100 -15.74123 -15.43527 -15.38151 -14.82661 -14.64315 -14.30116 -14.11672 -13.72592 -13.07012 -12.96708 -12.77793 -12.39479 -12.37137 -12.25669 -12.18462 -11.91677 -11.60544 -11.47083 -11.32388 -10.93899 -10.75674 -10.61388 -10.04916 -9.41148 -8.37369 -6.50358 0.42642 0.66883 0.90498 1.34548 1.36689 1.44725 1.48441 1.86813 2.03442 2.24577 2.32950 2.74363 2.90837 2.95420 3.38281 3.68426 3.84928 3.90627 4.05916 4.21163 4.32609 4.35568 4.42800 4.72311 4.82685 4.85649 4.93502 4.97105 5.04908 5.15908 5.27671 5.51048 5.53684 5.70426 5.75246 5.92354 6.17167 6.29114 6.58875 6.81254 6.98869 7.19370 8.71121 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.022339 B = 0.004166 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.138491 B = 6719.443100 C = 7502.045037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.271 3.729 10 N -0.338 5.338 11 C 0.067 3.933 12 C -0.277 4.277 13 C 0.246 3.754 14 N -0.499 5.499 15 C 0.711 3.289 16 O -0.553 6.553 17 N -0.688 5.688 18 C 0.152 3.848 19 H 0.174 0.826 20 C -0.186 4.186 21 C -0.182 4.182 22 C -0.130 4.130 23 C 0.507 3.493 24 O -0.475 6.475 25 N -0.316 5.316 26 H 0.274 0.726 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.216 0.784 30 H 0.173 0.827 31 H 0.460 0.540 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.800 -17.080 -5.809 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.065 0.935 9 C 0.153 3.847 10 N -0.121 5.121 11 C -0.081 4.081 12 C -0.308 4.308 13 C -0.006 4.006 14 N -0.242 5.242 15 C 0.411 3.589 16 O -0.427 6.427 17 N -0.355 5.355 18 C 0.043 3.957 19 H 0.191 0.809 20 C -0.205 4.205 21 C -0.219 4.219 22 C -0.167 4.167 23 C 0.295 3.705 24 O -0.342 6.342 25 N -0.146 5.146 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.190 0.810 31 H 0.310 0.690 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.077 -15.642 -6.422 22.655 hybrid contribution 0.005 0.286 0.511 0.585 sum 15.082 -15.357 -5.911 22.321 Atomic orbital electron populations 1.69974 1.07043 1.28854 1.49742 1.25684 0.95863 1.02557 0.93760 0.85393 0.78467 0.78354 0.78490 1.20131 1.19074 1.19847 1.21364 0.93189 0.91181 1.53153 0.93490 1.19431 0.85493 0.81205 0.98552 1.49103 1.23225 1.20484 1.19300 1.23270 1.00074 0.88096 0.96653 1.21420 1.02110 1.06662 1.00624 1.19175 0.91457 0.94769 0.95234 1.43233 1.28061 1.21476 1.31445 1.15605 0.80982 0.79583 0.82700 1.90954 1.66641 1.52655 1.32430 1.45263 1.32999 1.24850 1.32398 1.21640 0.98693 0.85203 0.90126 0.80937 1.22353 1.10151 0.94754 0.93236 1.23157 0.99603 0.95124 1.04043 1.23166 0.92286 0.97742 1.03490 1.21972 0.83923 0.86413 0.78238 1.90865 1.66571 1.21580 1.55168 1.77565 1.03490 1.17192 1.16331 0.91699 0.96022 0.91298 0.76761 0.80999 0.69012 0.86717 0.88074 0.88479 0.86820 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.75 13.29 21.45 0.28 -52.47 16 2 C 0.02 1.25 5.46 84.66 0.46 1.71 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.55 -32.22 9.23 25.60 0.24 -31.99 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.27 14.39 6.26 85.63 0.54 14.93 16 10 N -0.34 -16.39 3.67 -351.84 -1.29 -17.68 16 11 C 0.07 2.60 11.44 83.52 0.96 3.56 16 12 C -0.28 -10.72 9.88 22.10 0.22 -10.50 16 13 C 0.25 10.64 7.68 133.24 1.02 11.66 16 14 N -0.50 -17.42 2.83 -599.32 -1.70 -19.12 16 15 C 0.71 19.79 8.58 179.44 1.54 21.33 16 16 O -0.55 -18.01 15.49 -3.83 -0.06 -18.07 16 17 N -0.69 -10.77 4.68 -459.60 -2.15 -12.92 16 18 C 0.15 2.55 4.06 44.37 0.18 2.73 16 19 H 0.17 1.71 8.14 -2.39 -0.02 1.69 16 20 C -0.19 -2.60 5.74 -10.79 -0.06 -2.66 16 21 C -0.18 -2.19 9.87 30.62 0.30 -1.88 16 22 C -0.13 -0.87 10.21 30.62 0.31 -0.56 16 23 C 0.51 16.18 7.61 87.94 0.67 16.85 16 24 O -0.47 -19.63 17.17 -2.90 -0.05 -19.68 16 25 N -0.32 -16.10 11.57 -54.33 -0.63 -16.73 16 26 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 3.46 8.07 -2.39 -0.02 3.45 16 29 H 0.22 6.16 8.06 -2.91 -0.02 6.13 16 30 H 0.17 6.03 6.52 -2.91 -0.02 6.01 16 31 H 0.46 3.62 8.76 -92.71 -0.81 2.81 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.10 1.22 6.86 -2.39 -0.02 1.20 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.12 0.25 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -79.08 318.80 3.13 -75.95 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.32 Total: 8.43 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 6.37 Total: 25.17 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.48 Total: -118.91 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.11 Total: -37.75 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -79.08 3.13 -75.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348599585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.109 kcal (2) G-P(sol) polarization free energy of solvation -79.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds