Wall clock time and date at job start Tue Mar 31 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38618 * 119.11970 * 2 1 4 4 C 1.39492 * 119.28883 * 179.97438 * 3 2 1 5 5 C 1.47699 * 121.12568 * 180.02562 * 4 3 2 6 6 O 1.21610 * 119.99732 * 147.57853 * 5 4 3 7 7 N 1.34774 * 120.00394 * 327.58230 * 5 4 3 8 8 C 1.46505 * 119.99839 * 5.80809 * 7 5 4 9 9 C 1.36718 * 120.00149 * 185.81670 * 7 5 4 10 10 H 1.07997 * 120.00322 * 19.31131 * 9 7 5 11 11 C 1.39151 * 119.99861 * 199.31743 * 9 7 5 12 12 N 1.31307 * 119.99572 * 11.36644 * 11 9 7 13 13 Si 1.86801 * 119.99833 * 191.36143 * 11 9 7 14 14 H 1.48498 * 109.46870 * 94.95568 * 13 11 9 15 15 H 1.48506 * 109.46893 * 214.95163 * 13 11 9 16 16 H 1.48498 * 109.47148 * 334.95608 * 13 11 9 17 17 C 1.41118 * 117.74810 * 0.02919 * 4 3 2 18 18 C 1.45826 * 134.27201 * 180.02562 * 17 4 3 19 19 O 1.35939 * 126.20179 * 359.95063 * 18 17 4 20 20 N 1.30650 * 107.59751 * 179.97438 * 18 17 4 21 21 N 1.39830 * 110.02636 * 359.97438 * 20 18 17 22 22 C 1.46495 * 125.37147 * 180.02562 * 21 20 18 23 23 C 1.36952 * 109.26203 * 0.02562 * 21 20 18 24 24 N 1.31470 * 119.12714 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47135 * 269.96788 * 1 2 3 26 26 H 1.08993 * 109.47424 * 29.97049 * 1 2 3 27 27 H 1.09003 * 109.46868 * 149.97661 * 1 2 3 28 28 H 1.08006 * 120.35672 * 0.02562 * 3 2 1 29 29 H 1.08993 * 109.46879 * 96.47828 * 8 7 5 30 30 H 1.09006 * 109.47043 * 216.47923 * 8 7 5 31 31 H 1.09003 * 109.46939 * 336.47765 * 8 7 5 32 32 H 0.97004 * 119.99050 * 179.97438 * 12 11 9 33 33 H 0.96702 * 114.00288 * 90.00163 * 19 18 17 34 34 H 1.09000 * 109.47269 * 269.98133 * 22 21 20 35 35 H 1.09007 * 109.46719 * 29.98140 * 22 21 20 36 36 H 1.09001 * 109.47543 * 149.97351 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1816 1.2110 0.0000 4 6 3.5765 1.2151 0.0005 5 6 4.3363 2.4817 0.0011 6 8 5.4112 2.5457 0.5662 7 7 3.8383 3.5666 -0.6245 8 6 2.4895 3.5284 -1.1951 9 6 4.5919 4.7027 -0.7268 10 1 5.6633 4.6533 -0.6004 11 6 3.9784 5.9228 -0.9938 12 7 2.6713 6.0289 -0.9269 13 14 5.0143 7.4097 -1.4471 14 1 5.0917 7.5269 -2.9254 15 1 4.3927 8.6359 -0.8852 16 1 6.3817 7.2484 -0.8910 17 6 4.2373 -0.0319 0.0004 18 6 5.6365 -0.4425 0.0013 19 8 6.7158 0.3840 0.0016 20 7 5.6648 -1.7487 0.0013 21 7 4.3618 -2.2559 0.0009 22 6 4.0048 -3.6767 0.0013 23 6 3.4718 -1.2150 0.0002 24 7 2.1470 -1.1484 -0.0005 25 1 -0.3633 -0.0006 1.0277 26 1 -0.3634 0.8902 -0.5133 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6331 2.1414 0.0004 29 1 1.7833 3.9626 -0.4875 30 1 2.4713 4.0994 -2.1234 31 1 2.2104 2.4946 -1.3989 32 1 2.2437 6.8796 -1.1126 33 1 7.0276 0.6234 0.8851 34 1 3.9164 -4.0294 -1.0262 35 1 4.7795 -4.2458 0.5154 36 1 3.0532 -3.8122 0.5152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354132952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:50 Heat of formation + Delta-G solvation = 40.675749 kcal Electronic energy + Delta-G solvation = -23345.095779 eV Core-core repulsion = 19832.048876 eV Total energy + Delta-G solvation = -3513.046904 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.76865 -40.57436 -39.40114 -38.11591 -36.75527 -34.54550 -33.69413 -32.86814 -32.48617 -28.80002 -28.20639 -27.31784 -26.90450 -24.52280 -23.49326 -22.51035 -20.85494 -19.25996 -19.10209 -18.44155 -18.16393 -17.64496 -17.10463 -16.74766 -15.95508 -15.88432 -15.73530 -15.44590 -15.18817 -14.84450 -14.48848 -13.95412 -13.84450 -13.65993 -13.48386 -13.25518 -13.04339 -12.95664 -12.92138 -12.61827 -12.53933 -12.34395 -12.12752 -11.60873 -11.25443 -11.06722 -10.93383 -10.24500 -9.95171 -9.78643 -9.23109 -8.39777 -5.99192 -0.64841 0.06122 0.90641 1.06227 1.39316 1.42432 1.54522 2.01344 2.22326 2.50446 2.63417 2.82267 3.09922 3.25164 3.39626 3.62956 3.79564 4.02374 4.24106 4.36946 4.43533 4.45080 4.55601 4.66936 4.76599 4.90603 4.95804 4.97657 5.01415 5.17727 5.32430 5.39402 5.46352 5.78799 5.99283 6.22669 6.40106 6.54831 6.77079 7.08307 7.32508 7.92265 8.59202 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.005383 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.580365 B = 5199.981740 C = 6383.576407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.204 3.796 3 C -0.205 4.205 4 C 0.012 3.988 5 C 0.455 3.545 6 O -0.609 6.609 7 N -0.433 5.433 8 C 0.098 3.902 9 C -0.340 4.340 10 H 0.077 0.923 11 C 0.005 3.995 12 N -0.881 5.881 13 Si 0.993 3.007 14 H -0.266 1.266 15 H -0.269 1.269 16 H -0.276 1.276 17 C -0.246 4.246 18 C 0.293 3.707 19 O -0.450 6.450 20 N -0.266 5.266 21 N -0.382 5.382 22 C 0.108 3.892 23 C 0.318 3.682 24 N -0.502 5.502 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.173 0.827 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.279 0.721 33 H 0.415 0.585 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 -12.864 0.673 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.056 3.944 3 C -0.227 4.227 4 C -0.001 4.001 5 C 0.245 3.755 6 O -0.497 6.497 7 N -0.149 5.149 8 C -0.044 4.044 9 C -0.468 4.468 10 H 0.095 0.905 11 C -0.199 4.199 12 N -0.518 5.518 13 Si 0.816 3.184 14 H -0.191 1.191 15 H -0.193 1.193 16 H -0.201 1.201 17 C -0.259 4.259 18 C 0.076 3.924 19 O -0.255 6.255 20 N -0.094 5.094 21 N -0.177 5.177 22 C -0.030 4.030 23 C 0.079 3.921 24 N -0.219 5.219 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.191 0.809 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.275 0.725 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.804 -14.599 0.296 16.110 hybrid contribution 1.020 2.437 0.312 2.661 sum -5.784 -12.162 0.609 13.481 Atomic orbital electron populations 1.20970 0.83914 1.05589 1.05202 1.21897 0.98762 0.85362 0.88411 1.22823 0.92308 1.01783 1.05777 1.20018 0.94495 0.91751 0.93876 1.18236 0.87879 0.84598 0.84755 1.90504 1.24752 1.85102 1.49329 1.43695 1.15314 1.10475 1.45409 1.22320 0.82961 0.99906 0.99262 1.19729 0.92120 0.85693 1.49301 0.90512 1.26128 0.97318 1.00821 0.95664 1.69999 1.09304 1.27630 1.44890 0.84920 0.77955 0.76721 0.78790 1.19120 1.19330 1.20071 1.20700 0.94638 0.94444 1.16080 1.20861 0.86313 0.87259 0.98014 1.84804 1.43046 1.62611 1.35061 1.76715 0.99926 1.09751 1.22994 1.48103 0.98731 1.06413 1.64491 1.22193 1.03435 0.72761 1.04660 1.18871 0.89379 0.86631 0.97246 1.66484 1.04739 1.30463 1.20259 0.87899 0.87907 0.88835 0.80949 0.91192 0.92920 0.90327 0.91063 0.72453 0.89759 0.87674 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.14 71.24 0.72 -0.93 16 2 C 0.20 5.70 6.77 42.71 0.29 5.98 16 3 C -0.20 -6.92 7.15 22.66 0.16 -6.75 16 4 C 0.01 0.52 5.53 -19.77 -0.11 0.41 16 5 C 0.46 23.57 7.40 86.74 0.64 24.21 16 6 O -0.61 -34.69 14.26 15.40 0.22 -34.47 16 7 N -0.43 -22.59 3.01 -662.37 -2.00 -24.58 16 8 C 0.10 4.21 7.10 127.77 0.91 5.12 16 9 C -0.34 -19.13 9.32 84.15 0.78 -18.34 16 10 H 0.08 4.63 7.40 -2.91 -0.02 4.61 16 11 C 0.00 0.23 5.16 84.99 0.44 0.67 16 12 N -0.88 -43.99 10.39 21.70 0.23 -43.76 16 13 Si 0.99 41.14 29.57 68.60 2.03 43.17 16 14 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 15 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 16 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 17 C -0.25 -10.26 6.13 -19.95 -0.12 -10.38 16 18 C 0.29 12.04 8.54 86.83 0.74 12.78 16 19 O -0.45 -18.75 11.78 -73.39 -0.86 -19.61 16 20 N -0.27 -9.69 12.42 -167.12 -2.08 -11.77 16 21 N -0.38 -12.01 4.04 -366.53 -1.48 -13.49 16 22 C 0.11 2.06 11.44 127.77 1.46 3.53 16 23 C 0.32 11.23 7.97 134.12 1.07 12.30 16 24 N -0.50 -15.46 10.26 -181.17 -1.86 -17.31 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.10 1.36 8.07 -2.39 -0.02 1.34 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.17 5.41 4.98 -2.91 -0.01 5.39 16 29 H 0.07 3.00 6.88 -2.39 -0.02 2.98 16 30 H 0.05 2.39 7.13 -2.38 -0.02 2.37 16 31 H 0.08 2.88 4.44 -2.39 -0.01 2.87 16 32 H 0.28 12.91 8.31 -92.71 -0.77 12.14 16 33 H 0.42 14.58 8.79 -74.06 -0.65 13.92 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.72 306.42 1.69 -71.04 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.50 Total: 22.20 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 6.99 Total: 28.59 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -7.19 Total: -110.92 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.64 Total: -54.08 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -72.72 1.69 -71.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354132952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.712 kcal (2) G-P(sol) polarization free energy of solvation -72.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds