Wall clock time and date at job start Tue Mar 31 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34681 * 117.00252 * 2 1 4 4 O 1.21428 * 119.99686 * 359.97438 * 3 2 1 5 5 C 1.48056 * 120.00016 * 179.97438 * 3 2 1 6 6 C 1.39248 * 119.65706 * 179.72295 * 5 3 2 7 7 C 1.39844 * 118.89124 * 179.75839 * 6 5 3 8 8 C 1.47983 * 120.89672 * 180.26087 * 7 6 5 9 9 O 1.21562 * 120.00117 * 337.28719 * 8 7 6 10 10 N 1.34777 * 119.99806 * 157.28150 * 8 7 6 11 11 C 1.36776 * 120.00284 * 6.58338 * 10 8 7 12 12 H 1.07994 * 120.00350 * 304.88879 * 11 10 8 13 13 C 1.39118 * 119.99916 * 124.88835 * 11 10 8 14 14 N 1.31324 * 120.00099 * 176.10415 * 13 11 10 15 15 Si 1.86795 * 120.00184 * 356.11172 * 13 11 10 16 16 H 1.48499 * 109.47807 * 94.67128 * 15 13 11 17 17 H 1.48505 * 109.47161 * 214.67700 * 15 13 11 18 18 H 1.48509 * 109.47074 * 334.66916 * 15 13 11 19 19 C 1.46506 * 119.99712 * 186.58431 * 10 8 7 20 20 C 1.53000 * 117.49707 * 178.73337 * 19 10 8 21 21 C 1.52995 * 117.49827 * 110.11000 * 19 10 8 22 22 C 1.39912 * 118.20988 * 0.50439 * 7 6 5 23 23 C 1.38465 * 119.18330 * 359.73514 * 22 7 6 24 24 N 1.31473 * 121.05445 * 0.02562 * 23 22 7 25 25 H 1.08998 * 109.46852 * 60.00196 * 1 2 3 26 26 H 1.09002 * 109.46848 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46792 * 300.00179 * 1 2 3 28 28 H 1.07998 * 120.55083 * 359.97438 * 6 5 3 29 29 H 0.96996 * 119.99920 * 179.97438 * 14 13 11 30 30 H 1.09002 * 115.54730 * 324.43509 * 19 10 8 31 31 H 1.09003 * 117.50324 * 359.97438 * 20 19 10 32 32 H 1.08999 * 117.49811 * 145.02078 * 20 19 10 33 33 H 1.09008 * 117.49997 * 214.97800 * 21 19 10 34 34 H 1.08996 * 117.50527 * 359.97438 * 21 19 10 35 35 H 1.08004 * 120.40707 * 179.75423 * 22 7 6 36 36 H 1.08002 * 119.47024 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2184 -0.0005 5 6 3.5421 1.2774 0.0006 6 6 4.1668 2.5218 -0.0053 7 6 5.5642 2.5763 0.0005 8 6 6.2740 3.8748 0.0004 9 8 5.7152 4.8730 -0.4108 10 7 7.5401 3.9507 0.4564 11 6 8.2154 2.8098 0.7927 12 1 7.7921 2.1236 1.5111 13 6 9.4477 2.5335 0.2093 14 7 10.1317 1.4782 0.5879 15 14 10.1298 3.6634 -1.1126 16 1 11.0384 4.6602 -0.4914 17 1 10.8828 2.8608 -2.1097 18 1 9.0101 4.3675 -1.7879 19 6 8.1928 5.2553 0.5919 20 6 9.6200 5.2773 1.1430 21 6 8.4580 5.7688 2.0085 22 6 6.2731 1.3701 0.0011 23 6 5.5730 0.1755 0.0016 24 7 4.2583 0.1599 0.0010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.5820 3.4297 -0.0106 29 1 10.9907 1.2854 0.1808 30 1 7.9359 5.9909 -0.1703 31 1 10.0731 4.3212 1.4051 32 1 10.3023 6.0275 0.7433 33 1 8.3759 6.8424 2.1783 34 1 8.1465 5.1363 2.8397 35 1 7.3532 1.3708 0.0016 36 1 6.1155 -0.7583 0.0017 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434209129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:35 Heat of formation + Delta-G solvation = -22.330518 kcal Electronic energy + Delta-G solvation = -22917.830543 eV Core-core repulsion = 19369.758731 eV Total energy + Delta-G solvation = -3548.071812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65091 -39.78510 -38.63433 -36.57057 -36.36493 -33.95687 -32.26115 -31.65635 -31.16684 -27.84323 -25.66464 -24.56956 -24.07079 -22.09682 -21.79967 -20.94883 -19.54820 -18.28610 -17.35610 -17.18098 -16.32342 -16.31532 -15.56392 -15.30832 -15.00814 -14.69165 -14.29487 -14.14143 -13.70799 -13.60191 -13.42569 -12.93664 -12.87605 -12.64058 -12.13721 -11.86951 -11.52437 -11.41900 -11.02383 -10.84367 -10.76282 -10.65820 -10.26017 -9.95366 -9.66149 -9.51236 -9.41970 -9.32371 -8.86928 -8.77712 -7.73757 -6.71332 -4.57978 0.85540 1.28213 2.57872 2.66935 2.98844 3.13193 3.22076 3.53898 3.89368 3.98451 4.26635 4.38036 4.40150 4.72621 5.07000 5.09784 5.14301 5.24273 5.32743 5.44231 5.47015 5.47923 5.58321 5.68902 5.99900 6.02478 6.15124 6.19013 6.32383 6.37461 6.61127 6.72853 6.78780 7.03790 7.23466 7.68782 7.78655 7.90713 8.14626 8.61450 8.95859 9.34287 10.30723 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.025320 B = 0.004770 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.577907 B = 5868.167648 C = 6540.943138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.336 6.336 3 C 0.530 3.470 4 O -0.504 6.504 5 C 0.055 3.945 6 C -0.059 4.059 7 C -0.076 4.076 8 C 0.538 3.462 9 O -0.576 6.576 10 N -0.433 5.433 11 C -0.365 4.365 12 H 0.109 0.891 13 C 0.075 3.925 14 N -0.855 5.855 15 Si 0.883 3.117 16 H -0.257 1.257 17 H -0.291 1.291 18 H -0.260 1.260 19 C 0.067 3.933 20 C -0.192 4.192 21 C -0.184 4.184 22 C -0.091 4.091 23 C 0.075 3.925 24 N -0.433 5.433 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.151 0.849 29 H 0.282 0.718 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.211 0.789 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 -2.029 -0.183 6.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.251 6.251 3 C 0.374 3.626 4 O -0.392 6.392 5 C -0.080 4.080 6 C -0.080 4.080 7 C -0.087 4.087 8 C 0.328 3.672 9 O -0.459 6.459 10 N -0.153 5.153 11 C -0.492 4.492 12 H 0.126 0.874 13 C -0.135 4.135 14 N -0.488 5.488 15 Si 0.710 3.290 16 H -0.182 1.182 17 H -0.218 1.218 18 H -0.184 1.184 19 C -0.037 4.037 20 C -0.230 4.230 21 C -0.223 4.223 22 C -0.111 4.111 23 C -0.085 4.085 24 N -0.145 5.145 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.169 0.831 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.227 0.773 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.056 -2.126 -0.391 7.380 hybrid contribution 0.786 1.209 -0.471 1.517 sum -6.270 -0.918 -0.863 6.396 Atomic orbital electron populations 1.23295 0.76659 1.03633 1.02458 1.86690 1.22738 1.32040 1.83668 1.20868 0.87992 0.81481 0.72295 1.90835 1.66013 1.36172 1.46146 1.19616 0.90240 0.90025 1.08124 1.22088 0.94302 0.98133 0.93498 1.20277 0.92498 0.95313 1.00606 1.18077 0.82858 0.87056 0.79259 1.90672 1.68289 1.37217 1.49726 1.42895 1.11037 1.04606 1.56726 1.19019 1.04605 0.98725 1.26808 0.87384 1.25631 0.96026 0.95636 0.96256 1.69623 1.13631 1.25227 1.40301 0.86817 0.80433 0.80761 0.81034 1.18198 1.21801 1.18370 1.21778 0.96164 0.89043 0.96763 1.23587 0.91000 1.04200 1.04172 1.23233 1.03356 1.00146 0.95526 1.24800 1.07361 0.90894 0.88006 1.23001 0.88508 0.99069 0.97960 1.67399 1.09283 1.30036 1.07793 0.91932 0.88045 0.91935 0.83149 0.90781 0.86649 0.86038 0.89108 0.89389 0.88584 0.77336 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.34 -5.07 10.38 -40.44 -0.42 -5.49 16 3 C 0.53 9.15 7.95 34.76 0.28 9.43 16 4 O -0.50 -9.33 16.11 -19.21 -0.31 -9.63 16 5 C 0.06 1.01 6.74 -83.07 -0.56 0.45 16 6 C -0.06 -1.14 9.20 -38.61 -0.36 -1.49 16 7 C -0.08 -1.56 5.77 -104.68 -0.60 -2.16 16 8 C 0.54 12.27 7.52 -12.27 -0.09 12.18 16 9 O -0.58 -14.22 16.48 5.31 0.09 -14.13 16 10 N -0.43 -9.65 2.26 -108.75 -0.25 -9.90 16 11 C -0.36 -8.23 5.65 -15.02 -0.08 -8.32 16 12 H 0.11 2.57 6.71 -52.49 -0.35 2.21 16 13 C 0.07 1.70 3.85 -17.44 -0.07 1.63 16 14 N -0.86 -20.24 13.95 55.50 0.77 -19.47 16 15 Si 0.88 18.66 23.84 -169.99 -4.05 14.61 16 16 H -0.26 -5.06 5.57 56.52 0.31 -4.75 16 17 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.26 -5.82 6.90 56.52 0.39 -5.43 16 19 C 0.07 1.36 4.19 -67.93 -0.28 1.08 16 20 C -0.19 -3.59 6.24 -26.73 -0.17 -3.76 16 21 C -0.18 -3.26 10.41 -26.73 -0.28 -3.54 16 22 C -0.09 -1.73 8.17 -38.87 -0.32 -2.05 16 23 C 0.08 1.26 11.17 -17.62 -0.20 1.06 16 24 N -0.43 -7.70 10.09 -9.87 -0.10 -7.80 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.15 2.92 7.48 -52.49 -0.39 2.53 16 29 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 30 H 0.12 2.37 7.83 -51.93 -0.41 1.96 16 31 H 0.12 2.51 5.20 -51.93 -0.27 2.24 16 32 H 0.09 1.52 7.55 -51.93 -0.39 1.13 16 33 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 34 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 35 H 0.21 4.28 4.25 -52.48 -0.22 4.06 16 36 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -27.23 306.20 -5.12 -32.36 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -3.81 Total: 8.91 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.66 Total: 5.94 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.43 Total: -37.17 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.64 Total: -29.25 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.05 Total: 14.61 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.23 -5.12 -32.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434209129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.025 kcal (2) G-P(sol) polarization free energy of solvation -27.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds