Wall clock time and date at job start Tue Mar 31 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99650 * 2 1 4 4 O 1.20830 * 120.00214 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99726 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47096 * 180.02562 * 5 3 2 7 7 C 1.36636 * 120.00026 * 89.99851 * 6 5 3 8 8 H 1.07998 * 119.99788 * 155.83187 * 7 6 5 9 9 C 1.39183 * 120.00055 * 335.83291 * 7 6 5 10 10 N 1.31278 * 120.00033 * 7.33789 * 9 7 6 11 11 Si 1.86798 * 120.00168 * 187.33592 * 9 7 6 12 12 H 1.48507 * 109.47112 * 89.99792 * 11 9 7 13 13 H 1.48498 * 109.47588 * 210.00106 * 11 9 7 14 14 H 1.48503 * 109.46978 * 330.00084 * 11 9 7 15 15 C 1.34772 * 119.99897 * 269.72749 * 6 5 3 16 16 O 1.21733 * 120.00107 * 4.74604 * 15 6 5 17 17 C 1.46421 * 119.99990 * 184.74414 * 15 6 5 18 18 C 1.34835 * 119.99822 * 173.77520 * 17 15 6 19 19 C 1.47310 * 120.00410 * 349.24658 * 18 17 15 20 20 C 1.40189 * 120.95528 * 313.27917 * 19 18 17 21 21 C 1.37965 * 118.96155 * 179.72765 * 20 19 18 22 22 N 1.31907 * 120.92987 * 0.54950 * 21 20 19 23 23 C 1.31903 * 122.12370 * 359.71888 * 22 21 20 24 24 C 1.37968 * 120.92662 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47246 * 299.99911 * 1 2 3 26 26 H 1.08999 * 109.46858 * 60.00167 * 1 2 3 27 27 H 1.08997 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47110 * 60.00045 * 5 3 2 29 29 H 1.08997 * 109.46862 * 299.99859 * 5 3 2 30 30 H 0.97004 * 120.00307 * 174.98377 * 10 9 7 31 31 H 1.08002 * 120.00207 * 353.78550 * 17 15 6 32 32 H 1.08004 * 119.99876 * 169.25337 * 18 17 15 33 33 H 1.08001 * 120.51568 * 359.97438 * 20 19 18 34 34 H 1.08005 * 119.53429 * 180.24851 * 21 20 19 35 35 H 1.07994 * 119.53406 * 180.02562 * 23 22 21 36 36 H 1.08000 * 120.51766 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1749 3.3347 1.1846 8 1 4.8281 4.1937 1.2260 9 6 3.5298 2.8947 2.3368 10 7 2.8522 1.7705 2.3210 11 14 3.6283 3.9039 3.9056 12 1 2.5021 4.8713 3.9435 13 1 3.5448 3.0007 5.0814 14 1 4.9163 4.6423 3.9391 15 6 4.1784 3.3247 -1.1658 16 8 3.9283 2.7676 -2.2189 17 6 4.6931 4.6955 -1.1670 18 6 5.0087 5.2961 -2.3322 19 6 5.0640 4.5083 -3.5757 20 6 5.7334 3.2774 -3.6203 21 6 5.7547 2.5710 -4.8052 22 7 5.1666 3.0439 -5.8871 23 6 4.5306 4.1995 -5.8914 24 6 4.4531 4.9705 -4.7499 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9563 0.7807 -0.8891 29 1 3.9556 0.7810 0.8908 30 1 2.4638 1.4267 3.1408 31 1 4.8201 5.2255 -0.2346 32 1 5.2210 6.3549 -2.3539 33 1 6.2213 2.8862 -2.7397 34 1 6.2643 1.6197 -4.8489 35 1 4.0634 4.5465 -6.8011 36 1 3.9304 5.9155 -4.7608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491866111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:42 Heat of formation + Delta-G solvation = -36.768861 kcal Electronic energy + Delta-G solvation = -23298.263993 eV Core-core repulsion = 19749.566088 eV Total energy + Delta-G solvation = -3548.697905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.79437 -39.31268 -38.27458 -35.67859 -34.71958 -33.68055 -31.74183 -30.70897 -30.24702 -28.48182 -26.39815 -25.06319 -23.62615 -22.81101 -21.30423 -19.88463 -19.11792 -17.34517 -16.78113 -16.53139 -15.72467 -15.55272 -15.42212 -15.23786 -15.06588 -14.54357 -14.12498 -13.71199 -13.46981 -13.12171 -12.97683 -12.64187 -12.53389 -12.28650 -11.91671 -11.52808 -11.39178 -11.26760 -11.23227 -10.89145 -10.69905 -10.50424 -9.89420 -9.82226 -9.58386 -9.09603 -9.03323 -8.80662 -8.60468 -8.05285 -7.86344 -6.62181 -4.18611 1.26842 1.73535 2.41359 3.02678 3.09153 3.11264 3.60032 3.69831 3.98278 4.27432 4.39363 4.61403 4.92674 4.93387 5.11997 5.30355 5.58223 5.64893 5.69135 5.76554 5.79914 5.93381 5.99227 6.13138 6.21630 6.27170 6.35585 6.44512 6.61722 6.73863 6.84062 7.02873 7.16836 7.23838 7.42061 7.54965 8.09281 8.48649 8.81519 9.11394 9.22298 9.64401 10.39939 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.016640 B = 0.005809 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.285982 B = 4819.178512 C = 5990.173766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.374 6.374 3 C 0.493 3.507 4 O -0.512 6.512 5 C 0.156 3.844 6 N -0.413 5.413 7 C -0.328 4.328 8 H 0.106 0.894 9 C 0.043 3.957 10 N -0.876 5.876 11 Si 0.936 3.064 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.477 3.523 16 O -0.589 6.589 17 C -0.132 4.132 18 C -0.105 4.105 19 C 0.010 3.990 20 C -0.088 4.088 21 C 0.080 3.920 22 N -0.495 5.495 23 C 0.080 3.920 24 C -0.168 4.168 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.277 0.723 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 1.779 -3.676 5.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C 0.335 3.665 4 O -0.397 6.397 5 C 0.031 3.969 6 N -0.129 5.129 7 C -0.456 4.456 8 H 0.124 0.876 9 C -0.162 4.162 10 N -0.515 5.515 11 Si 0.762 3.238 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.192 1.192 15 C 0.269 3.731 16 O -0.476 6.476 17 C -0.153 4.153 18 C -0.126 4.126 19 C 0.001 3.999 20 C -0.108 4.108 21 C -0.075 4.075 22 N -0.204 5.204 23 C -0.078 4.078 24 C -0.188 4.188 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.151 0.849 30 H 0.088 0.912 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.704 1.181 -4.757 5.598 hybrid contribution -0.654 1.014 2.085 2.409 sum 2.050 2.196 -2.672 4.020 Atomic orbital electron populations 1.22912 0.78868 1.01759 1.01479 1.86455 1.21505 1.35501 1.85699 1.23776 0.92163 0.80466 0.70095 1.90511 1.66605 1.36454 1.46160 1.20634 0.87375 0.85154 1.03749 1.43325 1.55630 1.08386 1.05569 1.19740 1.26756 1.13637 0.85436 0.87604 1.25396 0.93958 0.96318 1.00515 1.69493 1.33594 1.19223 1.29155 0.85779 0.78921 0.79379 0.79679 1.20078 1.20643 1.19231 1.18239 0.84377 0.86729 0.83757 1.90748 1.57921 1.68388 1.30581 1.23302 0.97776 0.96174 0.98037 1.22048 1.01180 0.98220 0.91117 1.19184 0.94040 0.93812 0.92831 1.22020 0.97500 0.93309 0.98015 1.22365 0.97549 0.99164 0.88470 1.67435 1.08810 1.13556 1.30636 1.22347 0.97128 0.90850 0.97464 1.22106 1.01670 1.01521 0.93526 0.92803 0.93251 0.89607 0.90437 0.84871 0.91212 0.84835 0.85279 0.85863 0.83705 0.83800 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.86 16 2 O -0.37 -8.18 10.57 -39.26 -0.41 -8.60 16 3 C 0.49 12.24 5.84 36.01 0.21 12.45 16 4 O -0.51 -14.28 15.81 -18.75 -0.30 -14.57 16 5 C 0.16 3.67 5.22 -5.19 -0.03 3.64 16 6 N -0.41 -9.95 2.10 -117.70 -0.25 -10.20 16 7 C -0.33 -7.79 9.04 -15.06 -0.14 -7.93 16 8 H 0.11 2.30 6.02 -52.49 -0.32 1.98 16 9 C 0.04 1.02 5.40 -17.44 -0.09 0.93 16 10 N -0.88 -21.71 8.11 55.51 0.45 -21.26 16 11 Si 0.94 18.74 29.56 -169.99 -5.03 13.71 16 12 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 15 C 0.48 11.05 6.78 -12.97 -0.09 10.96 16 16 O -0.59 -14.57 11.92 5.16 0.06 -14.51 16 17 C -0.13 -2.52 9.22 -37.50 -0.35 -2.87 16 18 C -0.10 -1.74 9.85 -37.10 -0.37 -2.11 16 19 C 0.01 0.17 4.44 -104.74 -0.46 -0.29 16 20 C -0.09 -1.60 6.80 -38.95 -0.26 -1.86 16 21 C 0.08 1.39 11.17 -17.62 -0.20 1.19 16 22 N -0.49 -8.81 10.34 -13.36 -0.14 -8.95 16 23 C 0.08 1.28 11.17 -17.62 -0.20 1.08 16 24 C -0.17 -2.72 9.91 -38.95 -0.39 -3.10 16 25 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 26 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.72 7.48 -51.93 -0.39 1.33 16 29 H 0.13 3.11 6.42 -51.93 -0.33 2.78 16 30 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.13 2.35 6.24 -52.49 -0.33 2.02 16 32 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.12 2.21 7.39 -52.49 -0.39 1.83 16 34 H 0.15 2.14 8.06 -52.48 -0.42 1.71 16 35 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -31.30 313.63 -6.02 -37.32 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -3.85 Total: 8.38 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: -1.29 Total: 13.94 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.06 Total: -40.40 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.65 Total: -37.68 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.30 -6.02 -37.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491866111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.555 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds