Wall clock time and date at job start Tue Mar 31 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34587 * 124.97080 * 2 1 4 4 C 1.34334 * 110.97287 * 179.97438 * 3 2 1 5 5 N 1.33059 * 134.32955 * 180.02562 * 4 3 2 6 6 C 1.31593 * 120.75564 * 179.97438 * 5 4 3 7 7 N 1.32045 * 122.74365 * 0.02564 * 6 5 4 8 8 C 1.33034 * 120.91719 * 359.97438 * 7 6 5 9 9 N 1.38314 * 120.86426 * 179.73052 * 8 7 6 10 10 C 1.46503 * 119.99829 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.47125 * 180.02562 * 10 9 8 12 12 O 1.21285 * 120.00221 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99735 * 179.97438 * 11 10 9 14 14 C 1.37104 * 119.99777 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99848 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00045 * 179.97438 * 14 13 11 17 17 N 1.31419 * 119.99962 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00086 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47354 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47435 * 120.00365 * 18 16 14 21 21 H 1.48503 * 109.47402 * 240.00238 * 18 16 14 22 22 C 1.40189 * 118.27639 * 0.02562 * 8 7 6 23 23 C 1.34079 * 124.96882 * 179.97438 * 2 1 3 24 24 C 1.50704 * 126.96028 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47291 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46981 * 120.02434 * 1 2 3 27 27 H 1.09005 * 109.47014 * 240.02585 * 1 2 3 28 28 H 1.08009 * 118.62548 * 179.97438 * 6 5 4 29 29 H 0.97001 * 120.00791 * 179.97438 * 9 8 7 30 30 H 1.09005 * 109.47208 * 300.00306 * 10 9 8 31 31 H 1.08997 * 109.47206 * 59.99981 * 10 9 8 32 32 H 0.97001 * 120.00696 * 0.02562 * 13 11 10 33 33 H 0.96991 * 119.99970 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.47281 * 90.02555 * 24 23 2 35 35 H 1.09004 * 109.46792 * 210.02854 * 24 23 2 36 36 H 1.08999 * 109.47028 * 330.01794 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2784 1.1029 0.0000 4 6 3.5819 0.7779 0.0006 5 7 4.7143 1.4766 0.0012 6 6 5.8807 0.8675 0.0022 7 7 5.9998 -0.4476 0.0020 8 6 4.9247 -1.2312 0.0014 9 7 5.0507 -2.6086 -0.0043 10 6 6.3809 -3.2225 -0.0104 11 6 6.2416 -4.7230 -0.0165 12 8 5.1397 -5.2298 -0.0164 13 7 7.3416 -5.5018 -0.0232 14 6 7.2149 -6.8670 -0.0293 15 1 6.2337 -7.3182 -0.0292 16 6 8.3489 -7.6699 -0.0368 17 7 9.5428 -7.1208 -0.0374 18 14 8.1763 -9.5298 -0.0444 19 1 6.7364 -9.8934 -0.0416 20 1 8.8234 -10.0821 -1.2615 21 1 8.8317 -10.0928 1.1635 22 6 3.6608 -0.6247 0.0003 23 6 2.2754 -1.0987 0.0005 24 6 1.8080 -2.5314 0.0006 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5142 -0.8898 27 1 -0.3633 -0.5135 0.8903 28 1 6.7783 1.4684 0.0023 29 1 4.2583 -3.1682 -0.0043 30 1 6.9237 -2.9046 -0.9006 31 1 6.9285 -2.9117 0.8793 32 1 8.2229 -5.0966 -0.0237 33 1 10.3344 -7.6813 -0.0423 34 1 1.6961 -2.8772 -1.0270 35 1 2.5410 -3.1527 0.5153 36 1 0.8489 -2.6006 0.5138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505731732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:46 Heat of formation + Delta-G solvation = 16.464168 kcal Electronic energy + Delta-G solvation = -22155.336572 eV Core-core repulsion = 18641.239775 eV Total energy + Delta-G solvation = -3514.096797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.79809 -39.83897 -38.52421 -36.12379 -34.34930 -34.01513 -32.44155 -31.57813 -31.28127 -29.06758 -27.64882 -26.13570 -24.74577 -23.22676 -23.04558 -20.35760 -19.63252 -18.41928 -18.02923 -17.40244 -16.98296 -16.79635 -15.65570 -15.33600 -15.04103 -14.59762 -14.35108 -14.06773 -13.99852 -13.74832 -13.49733 -13.36906 -13.22041 -12.96976 -12.50758 -12.43368 -12.30400 -12.10117 -11.68178 -11.24548 -11.01797 -10.64199 -10.45448 -10.37338 -9.74122 -9.70762 -9.19213 -9.08425 -8.71934 -8.16888 -7.69274 -6.57415 -3.99576 0.84473 1.29794 2.12992 2.16406 3.05975 3.07488 3.19455 3.26216 3.65843 3.89219 4.03304 4.12562 4.26308 4.44694 4.68042 4.76137 4.84215 5.01507 5.11183 5.17781 5.24065 5.34196 5.53909 5.56036 5.66517 5.74795 5.82030 5.87029 5.99826 6.11502 6.32066 6.75271 6.92419 7.12720 7.40771 7.63955 7.86890 8.30580 8.37994 8.98425 9.32067 9.79456 10.59364 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.026858 B = 0.003381 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.281564 B = 8280.614287 C = 9297.128730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.001 3.999 3 O -0.178 6.178 4 C 0.323 3.677 5 N -0.559 5.559 6 C 0.372 3.628 7 N -0.590 5.590 8 C 0.498 3.502 9 N -0.673 5.673 10 C 0.113 3.887 11 C 0.425 3.575 12 O -0.599 6.599 13 N -0.546 5.546 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.027 3.973 17 N -0.893 5.893 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.293 4.293 23 C -0.130 4.130 24 C -0.090 4.090 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.208 0.792 29 H 0.422 0.578 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.396 0.604 33 H 0.274 0.726 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 12.837 0.057 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.047 4.047 3 O -0.073 6.073 4 C 0.143 3.857 5 N -0.290 5.290 6 C 0.083 3.917 7 N -0.321 5.321 8 C 0.248 3.752 9 N -0.306 5.306 10 C -0.015 4.015 11 C 0.210 3.790 12 O -0.486 6.486 13 N -0.180 5.180 14 C -0.435 4.435 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.304 4.304 23 C -0.133 4.133 24 C -0.147 4.147 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.224 0.776 29 H 0.265 0.735 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.230 13.063 0.056 17.226 hybrid contribution -0.154 -1.361 0.000 1.369 sum -11.384 11.702 0.056 16.326 Atomic orbital electron populations 1.20356 0.84181 1.04227 1.03856 1.22007 0.93538 0.82387 1.06740 1.83790 1.13290 1.34448 1.75814 1.19318 0.84579 0.87645 0.94156 1.67287 0.95166 1.40818 1.25718 1.24613 0.93045 0.86954 0.87118 1.68195 1.30412 1.06581 1.26865 1.17979 0.86735 0.85720 0.84783 1.44633 1.10389 1.01440 1.74126 1.21067 0.84038 0.92701 1.03699 1.19722 0.85800 0.87503 0.85935 1.90494 1.25837 1.74655 1.57590 1.41788 1.07128 1.06817 1.62298 1.19787 0.95027 0.80424 1.48287 0.87590 1.25337 0.94528 1.01127 0.96663 1.69619 0.97740 1.36811 1.49116 0.85752 0.78793 0.81639 0.77884 1.19111 1.20561 1.20555 1.20492 0.94094 0.96031 1.19752 1.20632 0.89791 0.96564 1.06353 1.20324 1.01733 0.89617 1.02993 0.90288 0.89319 0.89322 0.77580 0.73459 0.89400 0.89397 0.76970 0.91562 0.90432 0.90875 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 9.87 36.01 0.36 -0.14 16 2 C 0.00 0.01 7.24 -35.77 -0.26 -0.25 16 3 O -0.18 -2.59 10.56 4.84 0.05 -2.54 16 4 C 0.32 5.15 8.64 -16.17 -0.14 5.01 16 5 N -0.56 -8.55 10.46 -14.56 -0.15 -8.71 16 6 C 0.37 5.03 12.23 -92.11 -1.13 3.90 16 7 N -0.59 -9.19 9.72 -13.69 -0.13 -9.32 16 8 C 0.50 8.21 7.54 -154.74 -1.17 7.04 16 9 N -0.67 -11.49 5.66 -61.34 -0.35 -11.84 16 10 C 0.11 2.00 6.22 -5.19 -0.03 1.97 16 11 C 0.42 9.50 7.85 -10.99 -0.09 9.42 16 12 O -0.60 -15.02 15.24 5.55 0.08 -14.94 16 13 N -0.55 -13.18 5.29 -10.96 -0.06 -13.24 16 14 C -0.31 -8.15 9.68 -14.93 -0.14 -8.29 16 15 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 16 C 0.03 0.68 5.50 -17.46 -0.10 0.59 16 17 N -0.89 -23.35 13.05 55.50 0.72 -22.63 16 18 Si 0.93 20.16 29.55 -169.99 -5.02 15.14 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 C -0.29 -4.63 6.34 -105.02 -0.67 -5.29 16 23 C -0.13 -1.73 6.35 -102.79 -0.65 -2.39 16 24 C -0.09 -1.01 9.64 36.01 0.35 -0.66 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.21 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.42 7.33 4.82 -40.82 -0.20 7.14 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.40 9.16 7.90 -40.82 -0.32 8.83 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.94 6.21 -51.93 -0.32 0.62 16 36 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -31.47 317.13 -7.46 -38.93 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -3.72 Total: 13.46 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -3.67 Total: 10.91 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: 0.03 Total: -65.73 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.14 Total: -17.47 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.47 -7.46 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505731732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.392 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds