Wall clock time and date at job start Tue Mar 31 2020 02:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34708 * 116.99763 * 2 1 4 4 O 1.21476 * 119.99942 * 0.02562 * 3 2 1 5 5 C 1.47739 * 120.00325 * 180.02562 * 3 2 1 6 6 C 1.39741 * 120.48844 * 0.02562 * 5 3 2 7 7 N 1.31726 * 120.88871 * 180.02562 * 6 5 3 8 8 C 1.31753 * 122.05171 * 359.97268 * 7 6 5 9 9 C 1.39712 * 120.88896 * 0.02613 * 8 7 6 10 10 C 1.47727 * 120.49852 * 179.97438 * 9 8 7 11 11 O 1.21588 * 120.00148 * 335.21277 * 10 9 8 12 12 N 1.34775 * 120.00283 * 155.21339 * 10 9 8 13 13 C 1.36877 * 120.00131 * 174.42872 * 12 10 9 14 14 H 1.08006 * 120.00094 * 226.32938 * 13 12 10 15 15 C 1.39044 * 120.00248 * 46.33009 * 13 12 10 16 16 N 1.31364 * 120.00389 * 190.66149 * 15 13 12 17 17 Si 1.86806 * 119.99760 * 10.65417 * 15 13 12 18 18 H 1.48499 * 109.47528 * 264.37179 * 17 15 13 19 19 H 1.48499 * 109.46958 * 24.37669 * 17 15 13 20 20 H 1.48503 * 109.46955 * 144.37012 * 17 15 13 21 21 C 1.46498 * 119.99881 * 354.43088 * 12 10 9 22 22 C 1.53000 * 117.49973 * 182.62678 * 21 12 10 23 23 C 1.52998 * 60.00353 * 252.50812 * 22 21 12 24 24 C 1.39762 * 120.49515 * 180.30060 * 5 3 2 25 25 H 1.08998 * 109.47262 * 59.99950 * 1 2 3 26 26 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47058 * 299.99572 * 1 2 3 28 28 H 1.07997 * 119.55439 * 0.02562 * 6 5 3 29 29 H 1.08005 * 119.55903 * 180.02562 * 8 7 6 30 30 H 0.97001 * 119.99901 * 179.97438 * 16 15 13 31 31 H 1.09002 * 115.55193 * 328.33659 * 21 12 10 32 32 H 1.08999 * 117.49755 * 0.02562 * 22 21 12 33 33 H 1.09002 * 117.49599 * 145.01969 * 22 21 12 34 34 H 1.08994 * 117.50466 * 252.51293 * 23 22 21 35 35 H 1.09001 * 117.51842 * 107.47157 * 23 22 21 36 36 H 1.07998 * 120.92772 * 359.97438 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3100 0.1124 -0.0017 7 7 5.6259 0.1723 -0.0017 8 6 6.2736 1.3196 -0.0012 9 6 5.5822 2.5336 -0.0001 10 6 6.3172 3.8150 0.0010 11 8 7.4489 3.8664 0.4424 12 7 5.7333 4.9273 -0.4874 13 6 6.3678 6.1356 -0.3830 14 1 5.8232 7.0040 -0.0429 15 6 7.7136 6.2451 -0.7150 16 7 8.3758 7.3407 -0.4205 17 14 8.5801 4.8339 -1.5796 18 1 9.2752 3.9898 -0.5748 19 1 7.5814 4.0129 -2.3100 20 1 9.5727 5.3774 -2.5413 21 6 4.4194 4.8430 -1.1298 22 6 3.8370 6.1295 -1.7186 23 6 3.2475 5.5401 -0.4357 24 6 4.1840 2.5176 0.0057 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8205 -0.8503 -0.0025 29 1 7.3537 1.3217 -0.0016 30 1 9.3148 7.4169 -0.6518 31 1 4.2112 3.9101 -1.6538 32 1 4.4317 7.0385 -1.6282 33 1 3.2457 6.0432 -2.6302 34 1 2.2684 5.0659 -0.5032 35 1 3.4541 6.0609 0.4993 36 1 3.6184 3.4376 0.0107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545354293.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:45 Heat of formation + Delta-G solvation = -44.001262 kcal Electronic energy + Delta-G solvation = -23344.881001 eV Core-core repulsion = 19795.869476 eV Total energy + Delta-G solvation = -3549.011526 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.26669 -41.28408 -40.19142 -38.39862 -37.55075 -35.13322 -34.18176 -33.48166 -32.88090 -28.74867 -27.67485 -25.61254 -25.52451 -23.62774 -22.99420 -22.64304 -21.47069 -19.92922 -18.70178 -18.28754 -18.21664 -17.58319 -17.44114 -17.38302 -16.73877 -16.48378 -15.67660 -15.59368 -15.16676 -15.02205 -14.74271 -14.60854 -14.25809 -14.16099 -13.70377 -13.34047 -13.09910 -13.02183 -12.58367 -12.26110 -12.19603 -11.97519 -11.80095 -11.78707 -11.51069 -11.17196 -10.98945 -10.88829 -10.54876 -10.27609 -9.53860 -8.47009 -6.33938 -0.79923 -0.34522 1.15339 1.27778 1.35834 1.49055 1.50465 1.87917 2.34503 2.38520 2.59163 2.86311 2.99746 3.14084 3.42594 3.53056 3.58648 3.66887 3.84951 3.96730 4.03340 4.16050 4.29246 4.38456 4.41380 4.68493 4.77448 4.78367 4.81660 4.81734 5.10408 5.19898 5.24546 5.36157 5.59829 5.74500 6.48360 6.56395 6.60412 6.69486 7.15101 7.60832 8.58450 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.005834 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.955843 B = 4798.512641 C = 5816.542900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.525 3.475 4 O -0.520 6.520 5 C -0.189 4.189 6 C 0.185 3.815 7 N -0.495 5.495 8 C 0.178 3.822 9 C -0.189 4.189 10 C 0.487 3.513 11 O -0.576 6.576 12 N -0.432 5.432 13 C -0.336 4.336 14 H 0.079 0.921 15 C 0.040 3.960 16 N -0.906 5.906 17 Si 0.985 3.015 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.312 1.312 21 C 0.026 3.974 22 C -0.158 4.158 23 C -0.177 4.177 24 C 0.003 3.997 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.064 0.936 28 H 0.213 0.787 29 H 0.167 0.833 30 H 0.276 0.724 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.135 -16.505 -2.429 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.370 3.630 4 O -0.410 6.410 5 C -0.192 4.192 6 C 0.026 3.974 7 N -0.203 5.203 8 C 0.022 3.978 9 C -0.195 4.195 10 C 0.279 3.721 11 O -0.463 6.463 12 N -0.150 5.150 13 C -0.463 4.463 14 H 0.096 0.904 15 C -0.164 4.164 16 N -0.543 5.543 17 Si 0.818 3.182 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.243 1.243 21 C -0.078 4.078 22 C -0.195 4.195 23 C -0.215 4.215 24 C -0.022 4.022 25 H 0.085 0.915 26 H 0.156 0.844 27 H 0.083 0.917 28 H 0.230 0.770 29 H 0.184 0.816 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.202 -16.803 -2.215 23.446 hybrid contribution 0.338 1.088 -0.100 1.144 sum -15.863 -15.714 -2.315 22.449 Atomic orbital electron populations 1.23668 0.73604 1.06202 1.02911 1.86507 1.25640 1.30584 1.83682 1.20627 0.87889 0.82135 0.72384 1.90850 1.66800 1.36847 1.46512 1.20117 0.91482 0.95238 1.12393 1.23978 0.88451 0.99117 0.85823 1.67979 1.10477 1.27300 1.14512 1.23274 1.01445 0.86079 0.87025 1.20911 0.94675 0.95214 1.08666 1.18587 0.87281 0.84930 0.81288 1.90489 1.19364 1.85282 1.51197 1.43114 1.16891 1.06149 1.48812 1.18640 0.94145 0.87015 1.46526 0.90380 1.26089 0.97616 0.98220 0.94519 1.69730 1.10411 1.29228 1.44903 0.85009 0.78163 0.79337 0.75683 1.20197 1.20432 1.24268 1.22366 0.83699 0.98954 1.02777 1.23294 1.01926 0.96375 0.97935 1.23433 0.97307 1.03745 0.97061 1.22749 0.92855 0.99825 0.86816 0.91538 0.84403 0.91726 0.77019 0.81573 0.91420 0.85051 0.89435 0.85373 0.85361 0.89970 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.68 9.83 -56.17 -0.55 -6.24 16 3 C 0.53 11.77 7.90 70.33 0.56 12.33 16 4 O -0.52 -13.99 16.20 19.91 0.32 -13.66 16 5 C -0.19 -4.65 5.88 -20.03 -0.12 -4.77 16 6 C 0.18 4.01 10.78 85.07 0.92 4.93 16 7 N -0.49 -13.59 10.33 -193.58 -2.00 -15.58 16 8 C 0.18 5.92 10.76 85.06 0.91 6.83 16 9 C -0.19 -7.01 5.56 -20.03 -0.11 -7.12 16 10 C 0.49 23.28 5.72 86.75 0.50 23.77 16 11 O -0.58 -31.82 11.44 -3.99 -0.05 -31.87 16 12 N -0.43 -20.63 2.48 -616.49 -1.53 -22.16 16 13 C -0.34 -18.92 8.42 84.10 0.71 -18.21 16 14 H 0.08 4.64 7.49 -2.91 -0.02 4.62 16 15 C 0.04 2.40 5.08 84.96 0.43 2.83 16 16 N -0.91 -56.09 13.95 21.68 0.30 -55.79 16 17 Si 0.98 52.41 24.30 68.60 1.67 54.08 16 18 H -0.27 -15.27 6.32 99.48 0.63 -14.64 16 19 H -0.28 -14.08 6.92 99.48 0.69 -13.39 16 20 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 21 C 0.03 0.95 4.22 44.99 0.19 1.14 16 22 C -0.16 -5.19 9.80 30.59 0.30 -4.89 16 23 C -0.18 -5.54 8.92 30.60 0.27 -5.26 16 24 C 0.00 0.09 7.31 23.02 0.17 0.26 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.21 2.82 7.61 -2.91 -0.02 2.80 16 29 H 0.17 5.62 7.85 -2.91 -0.02 5.60 16 30 H 0.28 16.15 8.31 -92.71 -0.77 15.38 16 31 H 0.13 4.25 6.15 -2.39 -0.01 4.23 16 32 H 0.09 3.42 6.75 -2.39 -0.02 3.41 16 33 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.13 3.28 8.10 -2.39 -0.02 3.26 16 35 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.17 5.33 3.58 -2.91 -0.01 5.32 16 Total: -1.00 -73.89 306.35 5.12 -68.77 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.03 Total: 9.11 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.92 Total: 13.34 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -3.23 Total: -93.54 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.28 Total: -51.77 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 1.67 Total: 54.08 kcal Total: -73.89 5.12 -68.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545354293.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.773 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds