Wall clock time and date at job start Tue Mar 31 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48496 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46923 * 299.99870 * 3 2 1 6 6 H 1.48497 * 109.47189 * 59.99425 * 3 2 1 7 7 C 1.38949 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00013 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.34766 * 120.00247 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00163 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00336 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47307 * 185.43918 * 12 10 9 14 14 C 1.46432 * 111.00309 * 289.33788 * 13 12 10 15 15 C 1.53380 * 108.65110 * 178.88311 * 14 13 12 16 16 H 1.09006 * 109.76923 * 51.31278 * 15 14 13 17 17 C 1.52999 * 109.77518 * 172.10832 * 15 14 13 18 18 O 1.42899 * 109.47057 * 183.46779 * 17 15 14 19 19 C 1.53048 * 107.92070 * 291.71613 * 15 14 13 20 20 C 1.50808 * 109.65269 * 47.27411 * 19 15 14 21 21 C 1.38624 * 118.11336 * 164.60720 * 20 19 15 22 22 C 1.38050 * 120.48148 * 179.74329 * 21 20 19 23 23 C 1.38310 * 119.89064 * 359.97438 * 22 21 20 24 24 C 1.37803 * 119.95448 * 0.11977 * 23 22 21 25 25 C 1.38369 * 122.01868 * 344.53484 * 20 19 15 26 26 H 0.97003 * 119.99914 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99467 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.47087 * 65.43792 * 12 10 9 29 29 H 1.09001 * 109.46816 * 305.44058 * 12 10 9 30 30 H 1.08997 * 109.60559 * 59.13267 * 14 13 12 31 31 H 1.09001 * 109.74366 * 298.71668 * 14 13 12 32 32 H 1.09006 * 109.46589 * 303.46555 * 17 15 14 33 33 H 1.08995 * 109.47081 * 63.46514 * 17 15 14 34 34 H 0.96700 * 113.99380 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.44173 * 167.33048 * 19 15 14 36 36 H 1.09001 * 109.43545 * 287.22363 * 19 15 14 37 37 H 1.07995 * 119.75986 * 359.74399 * 21 20 19 38 38 H 1.08006 * 120.05312 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.02600 * 180.09790 * 23 22 21 40 40 H 1.08000 * 119.78966 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1927 -5.9763 0.1336 14 6 2.9826 -6.1410 -1.0883 15 6 3.9713 -7.2953 -0.8814 16 1 3.4399 -8.1755 -0.5196 17 6 4.6725 -7.6193 -2.2021 18 8 5.5316 -8.7467 -2.0212 19 6 5.0037 -6.8506 0.1573 20 6 4.3001 -6.2305 1.3383 21 6 5.0184 -6.0625 2.5120 22 6 4.4242 -5.4952 3.6215 23 6 3.1030 -5.0901 3.5644 24 6 2.3821 -5.2557 2.4017 25 6 2.9768 -5.8310 1.2771 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3906 -0.0002 28 1 0.6932 -4.9642 -0.9343 29 1 0.5450 -4.8794 0.8375 30 1 3.5312 -5.2223 -1.2958 31 1 2.3229 -6.3700 -1.9252 32 1 3.9263 -7.8494 -2.9626 33 1 5.2627 -6.7600 -2.5204 34 1 6.0094 -9.0092 -2.8199 35 1 5.5787 -7.7146 0.4902 36 1 5.6759 -6.1184 -0.2899 37 1 6.0502 -6.3776 2.5588 38 1 4.9904 -5.3672 4.5323 39 1 2.6364 -4.6445 4.4306 40 1 1.3505 -4.9388 2.3602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589996138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:13 Heat of formation + Delta-G solvation = -52.781875 kcal Electronic energy + Delta-G solvation = -23726.650523 eV Core-core repulsion = 20313.091337 eV Total energy + Delta-G solvation = -3413.559187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.56348 -38.04118 -37.33132 -35.91005 -34.17864 -33.62550 -31.31559 -30.53751 -29.47162 -27.62596 -25.72445 -24.81134 -23.69070 -21.62148 -21.46018 -19.35432 -19.08419 -17.95490 -17.51053 -16.51593 -16.25270 -15.64619 -15.58914 -14.68297 -14.43436 -14.30432 -14.06544 -13.78185 -13.47729 -13.42123 -13.12965 -12.94945 -12.65572 -12.30904 -11.86075 -11.57257 -11.51617 -11.39244 -11.15478 -11.06974 -10.84333 -10.44209 -10.38836 -10.28917 -10.15831 -9.99485 -9.75967 -9.47440 -8.56321 -8.21413 -8.02079 -7.09047 -6.47336 -3.88365 1.90941 1.95070 3.11545 3.23254 3.30353 3.76096 3.87199 4.12724 4.22905 4.53532 4.81878 4.90336 4.98771 5.15635 5.18425 5.32766 5.40265 5.43603 5.53242 5.59946 5.68700 5.73333 5.81748 5.87895 5.92173 6.05744 6.08133 6.13903 6.23432 6.32285 6.46267 6.50548 6.69250 6.90046 7.04452 7.20636 7.42715 7.49872 7.53719 7.77066 7.98266 8.52621 9.11066 9.45845 9.96004 10.69383 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.004947 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.982740 B = 5658.621629 C = 6333.057623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.556 5.556 10 C 0.410 3.590 11 O -0.581 6.581 12 C 0.038 3.962 13 N -0.474 5.474 14 C 0.054 3.946 15 C -0.086 4.086 16 H 0.084 0.916 17 C 0.084 3.916 18 O -0.572 6.572 19 C -0.060 4.060 20 C -0.115 4.115 21 C -0.097 4.097 22 C -0.158 4.158 23 C -0.096 4.096 24 C -0.153 4.153 25 C 0.164 3.836 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.376 0.624 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -13.221 -1.109 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.755 3.245 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.191 5.191 10 C 0.195 3.805 11 O -0.466 6.466 12 C -0.091 4.091 13 N -0.186 5.186 14 C -0.072 4.072 15 C -0.105 4.105 16 H 0.103 0.897 17 C 0.006 3.994 18 O -0.377 6.377 19 C -0.097 4.097 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.177 4.177 23 C -0.115 4.115 24 C -0.173 4.173 25 C 0.065 3.935 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.223 0.777 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.702 -13.429 -0.532 14.238 hybrid contribution 0.227 1.677 -0.643 1.810 sum 4.929 -11.752 -1.175 12.798 Atomic orbital electron populations 1.69617 1.05939 1.28163 1.50281 1.25264 0.95612 0.99746 0.97158 0.85820 0.79730 0.81164 0.77775 1.19258 1.20714 1.20659 1.19737 0.93350 0.82216 1.47456 0.87958 1.41920 1.09196 1.04705 1.63311 1.20633 0.88919 0.85701 0.85287 1.90541 1.13465 1.86554 1.56028 1.22257 0.95132 0.87782 1.03977 1.58497 1.18743 1.38782 1.02625 1.22194 0.95253 0.99040 0.90732 1.21202 0.96017 0.98673 0.94599 0.89717 1.22138 0.92434 0.88046 0.96760 1.86478 1.61950 1.49834 1.39421 1.20398 0.96848 0.99480 0.93021 1.19332 0.92212 1.04235 0.96004 1.20780 0.98806 0.99402 0.92569 1.20792 0.95512 1.02959 0.98432 1.20781 0.94510 0.98886 0.97329 1.21001 1.00339 1.02728 0.93236 1.18282 0.90468 0.94161 0.90553 0.91838 0.77435 0.88661 0.88504 0.90319 0.90658 0.93484 0.93297 0.77723 0.90817 0.91105 0.86891 0.86956 0.86712 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -13.68 5.29 -10.97 -0.06 -13.74 16 10 C 0.41 9.28 6.50 -10.99 -0.07 9.21 16 11 O -0.58 -14.92 12.55 5.55 0.07 -14.85 16 12 C 0.04 0.67 5.32 -4.98 -0.03 0.65 16 13 N -0.47 -8.22 4.72 -172.65 -0.82 -9.03 16 14 C 0.05 0.86 4.50 -3.88 -0.02 0.85 16 15 C -0.09 -1.22 2.65 -90.40 -0.24 -1.46 16 16 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.08 0.96 6.44 37.16 0.24 1.20 16 18 O -0.57 -6.27 13.43 -35.23 -0.47 -6.74 16 19 C -0.06 -0.94 4.94 -27.81 -0.14 -1.07 16 20 C -0.12 -2.05 5.74 -104.38 -0.60 -2.65 16 21 C -0.10 -1.61 9.63 -39.51 -0.38 -1.99 16 22 C -0.16 -2.57 10.05 -39.62 -0.40 -2.97 16 23 C -0.10 -1.66 10.03 -39.71 -0.40 -2.06 16 24 C -0.15 -2.84 8.28 -39.22 -0.32 -3.16 16 25 C 0.16 3.07 3.92 -83.85 -0.33 2.74 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 28 H 0.10 1.45 8.06 -51.93 -0.42 1.04 16 29 H 0.10 1.56 6.31 -51.93 -0.33 1.23 16 30 H 0.08 1.50 6.06 -51.93 -0.31 1.19 16 31 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.38 2.29 9.12 45.56 0.42 2.70 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.12 2.09 5.98 -52.49 -0.31 1.78 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -32.04 324.87 -8.19 -40.23 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -4.59 Total: 15.18 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.92 Total: -8.47 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.15 Total: -46.12 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.40 Total: -21.60 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.04 -8.19 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589996138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.550 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds