Wall clock time and date at job start Tue Mar 31 2020 03:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48496 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46923 * 299.99870 * 3 2 1 6 6 H 1.48497 * 109.47189 * 59.99425 * 3 2 1 7 7 C 1.38949 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00013 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.34766 * 120.00247 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00163 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00336 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47307 * 185.43918 * 12 10 9 14 14 C 1.46432 * 111.00309 * 289.33788 * 13 12 10 15 15 C 1.53380 * 108.65110 * 178.88311 * 14 13 12 16 16 H 1.09006 * 109.76923 * 51.31278 * 15 14 13 17 17 C 1.52999 * 109.77518 * 172.10832 * 15 14 13 18 18 O 1.42899 * 109.47057 * 183.46779 * 17 15 14 19 19 C 1.53048 * 107.92070 * 291.71613 * 15 14 13 20 20 C 1.50808 * 109.65269 * 47.27411 * 19 15 14 21 21 C 1.38624 * 118.11336 * 164.60720 * 20 19 15 22 22 C 1.38050 * 120.48148 * 179.74329 * 21 20 19 23 23 C 1.38310 * 119.89064 * 359.97438 * 22 21 20 24 24 C 1.37803 * 119.95448 * 0.11977 * 23 22 21 25 25 C 1.38369 * 122.01868 * 344.53484 * 20 19 15 26 26 H 0.97003 * 119.99914 * 0.02562 * 1 2 3 27 27 H 0.97005 * 119.99467 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.47087 * 65.43792 * 12 10 9 29 29 H 1.09001 * 109.46816 * 305.44058 * 12 10 9 30 30 H 1.08997 * 109.60559 * 59.13267 * 14 13 12 31 31 H 1.09001 * 109.74366 * 298.71668 * 14 13 12 32 32 H 1.09006 * 109.46589 * 303.46555 * 17 15 14 33 33 H 1.08995 * 109.47081 * 63.46514 * 17 15 14 34 34 H 0.96700 * 113.99380 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.44173 * 167.33048 * 19 15 14 36 36 H 1.09001 * 109.43545 * 287.22363 * 19 15 14 37 37 H 1.07995 * 119.75986 * 359.74399 * 21 20 19 38 38 H 1.08006 * 120.05312 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.02600 * 180.09790 * 23 22 21 40 40 H 1.08000 * 119.78966 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0010 13 7 2.1927 -5.9763 0.1336 14 6 2.9826 -6.1410 -1.0883 15 6 3.9713 -7.2953 -0.8814 16 1 3.4399 -8.1755 -0.5196 17 6 4.6725 -7.6193 -2.2021 18 8 5.5316 -8.7467 -2.0212 19 6 5.0037 -6.8506 0.1573 20 6 4.3001 -6.2305 1.3383 21 6 5.0184 -6.0625 2.5120 22 6 4.4242 -5.4952 3.6215 23 6 3.1030 -5.0901 3.5644 24 6 2.3821 -5.2557 2.4017 25 6 2.9768 -5.8310 1.2771 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3906 -0.0002 28 1 0.6932 -4.9642 -0.9343 29 1 0.5450 -4.8794 0.8375 30 1 3.5312 -5.2223 -1.2958 31 1 2.3229 -6.3700 -1.9252 32 1 3.9263 -7.8494 -2.9626 33 1 5.2627 -6.7600 -2.5204 34 1 6.0094 -9.0092 -2.8199 35 1 5.5787 -7.7146 0.4902 36 1 5.6759 -6.1184 -0.2899 37 1 6.0502 -6.3776 2.5588 38 1 4.9904 -5.3672 4.5323 39 1 2.6364 -4.6445 4.4306 40 1 1.3505 -4.9388 2.3602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589996138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:11 Heat of formation + Delta-G solvation = -76.589936 kcal Electronic energy + Delta-G solvation = -23727.682918 eV Core-core repulsion = 20313.091337 eV Total energy + Delta-G solvation = -3414.591582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94900 -39.72984 -38.35211 -37.20956 -35.90689 -35.05652 -33.29155 -31.75651 -30.81480 -29.13821 -26.82179 -26.62120 -25.06507 -22.93427 -22.76944 -21.03196 -20.38600 -19.88661 -18.49031 -18.04949 -17.63153 -16.96110 -16.90304 -16.43367 -15.95754 -15.83373 -15.32552 -15.18527 -14.95031 -14.78172 -14.46227 -14.36895 -13.91323 -13.60305 -13.54017 -13.20227 -13.03902 -12.67450 -12.63138 -12.43247 -12.36179 -12.16906 -12.03941 -11.64679 -11.51938 -11.38307 -11.11577 -10.84429 -10.28384 -9.99101 -9.55287 -8.56653 -8.42115 -5.96213 0.56058 0.60799 1.33113 1.39224 1.52410 2.01108 2.27242 2.59644 3.04527 3.17704 3.20742 3.43660 3.67145 3.85435 3.97565 4.14025 4.18928 4.31355 4.34130 4.36206 4.44854 4.54116 4.55585 4.57578 4.67728 4.69799 4.76986 4.86201 4.94492 5.06684 5.19837 5.25876 5.38520 5.40922 5.59341 5.71530 5.87799 5.96181 6.10768 6.42583 6.57096 6.94768 7.10962 7.53202 8.08067 8.68702 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.004947 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.982740 B = 5658.621629 C = 6333.057623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.326 4.326 8 H 0.075 0.925 9 N -0.568 5.568 10 C 0.416 3.584 11 O -0.612 6.612 12 C 0.046 3.954 13 N -0.469 5.469 14 C 0.054 3.946 15 C -0.081 4.081 16 H 0.082 0.918 17 C 0.091 3.909 18 O -0.586 6.586 19 C -0.057 4.057 20 C -0.136 4.136 21 C -0.107 4.107 22 C -0.161 4.161 23 C -0.110 4.110 24 C -0.177 4.177 25 C 0.141 3.859 26 H 0.277 0.723 27 H 0.396 0.604 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.398 0.602 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 -13.949 -1.369 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.456 4.456 8 H 0.093 0.907 9 N -0.205 5.205 10 C 0.202 3.798 11 O -0.498 6.498 12 C -0.084 4.084 13 N -0.181 5.181 14 C -0.072 4.072 15 C -0.099 4.099 16 H 0.100 0.900 17 C 0.013 3.987 18 O -0.395 6.395 19 C -0.094 4.094 20 C -0.138 4.138 21 C -0.126 4.126 22 C -0.180 4.180 23 C -0.129 4.129 24 C -0.197 4.197 25 C 0.043 3.957 26 H 0.087 0.913 27 H 0.230 0.770 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.248 0.752 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.861 -14.182 -0.804 15.014 hybrid contribution 0.247 1.819 -0.524 1.909 sum 5.108 -12.364 -1.328 13.443 Atomic orbital electron populations 1.69669 1.06709 1.29172 1.50366 1.25953 0.96459 1.02180 0.96382 0.84947 0.77950 0.77547 0.78366 1.20133 1.19502 1.19693 1.19596 0.92422 0.84031 1.49568 0.90738 1.41963 1.09271 1.04708 1.64531 1.21549 0.88763 0.86754 0.82704 1.90525 1.15290 1.87389 1.56598 1.22307 0.94979 0.84886 1.06185 1.58621 1.18819 1.37852 1.02808 1.22229 0.95780 0.98207 0.90980 1.21150 0.95408 0.97588 0.95787 0.89984 1.22002 0.92935 0.88350 0.95408 1.86415 1.62215 1.49452 1.41385 1.20391 0.96964 0.99312 0.92719 1.19762 0.92344 1.04407 0.97316 1.21185 0.99974 0.99045 0.92371 1.21184 0.95392 1.01924 0.99481 1.21129 0.95174 0.98933 0.97655 1.21228 1.00779 1.03652 0.94067 1.18543 0.91234 0.94903 0.91031 0.91317 0.77019 0.85767 0.86858 0.93753 0.88108 0.91352 0.93430 0.75181 0.89785 0.92222 0.84549 0.84130 0.84914 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 8 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 9 N -0.57 -28.43 5.29 -306.99 -1.62 -30.05 16 10 C 0.42 19.06 6.50 87.66 0.57 19.63 16 11 O -0.61 -32.24 12.55 -3.07 -0.04 -32.28 16 12 C 0.05 1.58 5.32 85.56 0.46 2.03 16 13 N -0.47 -15.92 4.72 -700.15 -3.31 -19.22 16 14 C 0.05 1.69 4.50 86.52 0.39 2.07 16 15 C -0.08 -2.19 2.65 -10.65 -0.03 -2.22 16 16 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 17 C 0.09 1.90 6.44 71.98 0.46 2.37 16 18 O -0.59 -11.53 13.43 -148.98 -2.00 -13.53 16 19 C -0.06 -1.73 4.94 29.90 0.15 -1.58 16 20 C -0.14 -4.81 5.74 -19.71 -0.11 -4.92 16 21 C -0.11 -3.48 9.63 22.32 0.21 -3.26 16 22 C -0.16 -5.06 10.05 22.24 0.22 -4.84 16 23 C -0.11 -3.75 10.03 22.18 0.22 -3.52 16 24 C -0.18 -6.59 8.28 22.50 0.19 -6.40 16 25 C 0.14 5.28 3.92 38.30 0.15 5.43 16 26 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 27 H 0.40 18.88 7.90 -92.70 -0.73 18.15 16 28 H 0.12 3.55 8.06 -2.39 -0.02 3.53 16 29 H 0.11 3.54 6.31 -2.39 -0.02 3.52 16 30 H 0.04 1.70 6.06 -2.39 -0.01 1.69 16 31 H 0.10 2.55 8.13 -2.39 -0.02 2.53 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 33 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.40 3.83 9.12 -74.06 -0.68 3.16 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 1.93 8.05 -2.39 -0.02 1.91 16 37 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.12 4.22 5.98 -2.91 -0.02 4.20 16 Total: -1.00 -69.54 324.87 -0.83 -70.37 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: -0.33 Total: 41.22 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.16 Total: -12.73 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -4.65 Total: -97.98 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -2.04 Total: -45.82 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -69.54 -0.83 -70.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589996138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.222 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds