Wall clock time and date at job start Tue Mar 31 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47348 * 240.00321 * 3 2 1 5 5 H 1.48498 * 109.46814 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47353 * 120.00021 * 3 2 1 7 7 C 1.37881 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99939 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.64627 * 298.29937 * 9 7 2 11 11 C 1.54598 * 110.72400 * 61.45114 * 9 7 2 12 12 C 1.53996 * 105.13725 * 140.31638 * 11 9 7 13 13 N 1.47900 * 107.06259 * 1.22501 * 12 11 9 14 14 C 1.46891 * 111.00089 * 214.15831 * 13 12 11 15 15 H 1.09002 * 109.47621 * 308.17323 * 14 13 12 16 16 C 1.50707 * 109.47113 * 188.17504 * 14 13 12 17 17 N 1.34774 * 119.99877 * 179.97438 * 16 14 13 18 18 O 1.21279 * 119.99473 * 0.02562 * 16 14 13 19 19 C 1.50696 * 109.47380 * 68.17596 * 14 13 12 20 20 C 1.38231 * 120.00005 * 83.39662 * 19 14 13 21 21 C 1.38245 * 120.00129 * 180.25590 * 20 19 14 22 22 C 1.38238 * 119.99724 * 359.53063 * 21 20 19 23 23 C 1.38231 * 119.99835 * 0.42632 * 22 21 20 24 24 C 1.38235 * 120.00107 * 263.37635 * 19 14 13 25 25 C 1.48531 * 105.81648 * 334.67094 * 13 12 11 26 26 H 0.96998 * 120.00095 * 359.97438 * 1 2 3 27 27 H 0.96705 * 113.99865 * 61.69916 * 10 9 7 28 28 H 1.08993 * 110.30919 * 21.40163 * 11 9 7 29 29 H 1.08997 * 110.39254 * 259.27237 * 11 9 7 30 30 H 1.09001 * 109.91399 * 241.86831 * 12 11 9 31 31 H 1.09005 * 110.08448 * 120.67107 * 12 11 9 32 32 H 0.96993 * 120.00535 * 0.02562 * 17 16 14 33 33 H 0.97005 * 120.00156 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.00080 * 359.97438 * 20 19 14 35 35 H 1.07994 * 120.00107 * 179.72925 * 21 20 19 36 36 H 1.07999 * 120.00171 * 180.21070 * 22 21 20 37 37 H 1.08001 * 119.99893 * 179.78718 * 23 22 21 38 38 H 1.07997 * 119.99892 * 359.97438 * 24 19 14 39 39 H 1.09006 * 110.66729 * 157.64071 * 25 13 12 40 40 H 1.09003 * 110.66652 * 280.77031 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4496 -2.6183 1.1776 11 6 0.3795 -2.6277 -1.2699 12 6 0.5075 -4.1014 -1.6979 13 7 1.3770 -4.7680 -0.7044 14 6 2.1991 -5.8076 -1.3376 15 1 1.5594 -6.4755 -1.9146 16 6 2.9187 -6.5962 -0.2738 17 7 3.7359 -7.6094 -0.6231 18 8 2.7617 -6.3195 0.8965 19 6 3.2073 -5.1626 -2.2531 20 6 4.3957 -4.6774 -1.7401 21 6 5.3184 -4.0809 -2.5792 22 6 5.0568 -3.9783 -3.9327 23 6 3.8688 -4.4642 -4.4457 24 6 2.9440 -5.0563 -3.6060 25 6 2.2270 -3.6958 -0.1263 26 1 -0.4850 0.8400 0.0004 27 1 -0.2286 -1.9342 1.2626 28 1 0.7559 -1.9718 -2.0548 29 1 -0.6595 -2.3884 -1.0436 30 1 0.9600 -4.1626 -2.6877 31 1 -0.4744 -4.5747 -1.7089 32 1 3.8612 -7.8309 -1.5591 33 1 4.1994 -8.1168 0.0615 34 1 4.6015 -4.7603 -0.6832 35 1 6.2450 -3.6980 -2.1777 36 1 5.7790 -3.5153 -4.5887 37 1 3.6628 -4.3809 -5.5027 38 1 2.0158 -5.4360 -4.0069 39 1 2.6043 -3.9900 0.8531 40 1 3.0492 -3.4520 -0.7991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:49 Heat of formation + Delta-G solvation = -42.858106 kcal Electronic energy + Delta-G solvation = -24416.817180 eV Core-core repulsion = 21003.688320 eV Total energy + Delta-G solvation = -3413.128860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.54255 -38.42565 -37.61149 -34.76152 -33.52124 -32.02669 -31.65356 -30.96118 -29.11197 -27.91418 -26.18981 -24.26807 -22.58354 -21.96255 -20.62712 -19.64232 -19.33266 -17.52231 -16.96777 -16.68675 -16.23742 -15.41474 -15.03047 -14.86483 -14.54242 -14.50745 -14.17855 -13.79260 -13.36685 -13.24983 -12.99904 -12.67271 -12.10227 -11.92549 -11.61745 -11.54519 -11.23195 -11.02660 -10.99381 -10.82771 -10.59477 -10.45012 -10.30612 -9.75955 -9.57620 -9.50110 -9.02282 -8.77584 -8.61429 -8.50077 -7.99539 -7.66141 -6.13042 -4.20436 1.38726 1.48468 2.88701 3.27471 3.32130 3.35351 3.58104 3.84170 4.35185 4.63607 4.87168 4.95633 5.05477 5.14257 5.15842 5.20491 5.39286 5.56913 5.66665 5.78369 5.98976 6.01949 6.08326 6.11381 6.25261 6.51210 6.54311 6.58098 6.61458 6.73682 6.91475 7.03869 7.05518 7.17460 7.38120 7.45473 7.59495 7.62296 7.71739 7.90058 8.28859 8.52131 8.81363 9.47817 9.68750 10.94057 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.006549 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.888969 B = 4274.661221 C = 5062.255358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.258 3.742 10 O -0.577 6.577 11 C -0.126 4.126 12 C 0.029 3.971 13 N -0.478 5.478 14 C 0.093 3.907 15 H 0.105 0.895 16 C 0.525 3.475 17 N -0.860 5.860 18 O -0.510 6.510 19 C -0.113 4.113 20 C -0.094 4.094 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.104 4.104 25 C 0.043 3.957 26 H 0.266 0.734 27 H 0.375 0.625 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.398 0.602 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.471 -11.973 -9.979 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.572 4.572 8 H 0.076 0.924 9 C 0.218 3.782 10 O -0.385 6.385 11 C -0.165 4.165 12 C -0.099 4.099 13 N -0.200 5.200 14 C -0.019 4.019 15 H 0.123 0.877 16 C 0.309 3.691 17 N -0.425 5.425 18 O -0.383 6.383 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.137 4.137 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.122 4.122 25 C -0.084 4.084 26 H 0.076 0.924 27 H 0.224 0.776 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.225 0.775 33 H 0.229 0.771 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.109 -12.302 -8.723 16.672 hybrid contribution 0.797 1.589 -1.114 2.098 sum 7.906 -10.712 -9.837 16.554 Atomic orbital electron populations 1.69727 1.05857 1.27344 1.50543 1.24975 0.94952 0.99221 0.93929 0.86588 0.79644 0.82668 0.78701 1.20275 1.21156 1.20079 1.21557 0.93424 0.90838 1.51362 0.92393 1.19303 0.86641 0.90416 0.81887 1.86195 1.51401 1.55915 1.44985 1.22891 1.01917 0.91100 1.00569 1.23051 0.96433 0.97101 0.93293 1.65067 1.16930 1.11521 1.26501 1.20855 0.93117 0.96076 0.91861 0.87671 1.20350 0.78686 0.80021 0.90091 1.43835 1.50062 1.36705 1.11918 1.90789 1.61703 1.66631 1.19166 1.20268 0.95357 1.01584 0.94353 1.21077 0.93152 0.97323 0.99684 1.21108 0.99517 0.99369 0.93656 1.21124 0.97350 0.99562 0.95410 1.21069 0.94279 0.99076 0.99596 1.20993 0.98938 0.99721 0.92584 1.23578 0.95264 0.90207 0.99322 0.92409 0.77647 0.92171 0.91524 0.94428 0.91726 0.77459 0.77126 0.86136 0.86084 0.86288 0.86180 0.86075 0.90038 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 11.00 55.43 0.61 -23.96 16 2 C 0.07 1.94 5.28 -17.82 -0.09 1.85 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.84 8.14 -34.44 -0.28 -15.12 16 8 H 0.06 1.61 7.78 -52.48 -0.41 1.20 16 9 C 0.26 6.75 0.95 -89.91 -0.09 6.66 16 10 O -0.58 -16.26 13.10 -35.23 -0.46 -16.72 16 11 C -0.13 -3.00 5.26 -25.37 -0.13 -3.13 16 12 C 0.03 0.57 6.46 -2.75 -0.02 0.55 16 13 N -0.48 -9.78 4.92 -225.28 -1.11 -10.89 16 14 C 0.09 1.47 2.44 -70.02 -0.17 1.30 16 15 H 0.11 1.40 8.00 -51.93 -0.42 0.98 16 16 C 0.53 8.31 5.86 -10.98 -0.06 8.25 16 17 N -0.86 -8.95 8.77 31.22 0.27 -8.67 16 18 O -0.51 -10.64 15.75 5.56 0.09 -10.55 16 19 C -0.11 -1.64 3.64 -104.63 -0.38 -2.02 16 20 C -0.09 -1.40 6.61 -39.58 -0.26 -1.66 16 21 C -0.12 -1.58 10.05 -39.58 -0.40 -1.97 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.10 -1.32 8.14 -39.58 -0.32 -1.64 16 25 C 0.04 1.00 4.29 -1.90 -0.01 0.99 16 26 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.37 10.48 7.46 45.56 0.34 10.82 16 28 H 0.06 1.49 7.84 -51.93 -0.41 1.09 16 29 H 0.07 1.66 7.99 -51.93 -0.41 1.25 16 30 H 0.04 0.66 5.35 -51.93 -0.28 0.38 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 3.04 8.72 -40.82 -0.36 2.69 16 33 H 0.40 3.58 8.93 -40.82 -0.36 3.22 16 34 H 0.12 1.95 6.83 -52.49 -0.36 1.59 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.33 7.69 -52.49 -0.40 0.93 16 39 H 0.08 2.10 6.98 -51.93 -0.36 1.74 16 40 H 0.06 1.32 4.37 -51.93 -0.23 1.10 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -32.73 320.18 -8.29 -41.01 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -4.48 Total: 18.36 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.01 Total: -9.59 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.23 Total: -43.52 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.37 Total: -27.28 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.73 -8.29 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.844 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds