Wall clock time and date at job start Tue Mar 31 2020 03:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47348 * 240.00321 * 3 2 1 5 5 H 1.48498 * 109.46814 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47353 * 120.00021 * 3 2 1 7 7 C 1.37881 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99939 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.64627 * 298.29937 * 9 7 2 11 11 C 1.54598 * 110.72400 * 61.45114 * 9 7 2 12 12 C 1.53996 * 105.13725 * 140.31638 * 11 9 7 13 13 N 1.47900 * 107.06259 * 1.22501 * 12 11 9 14 14 C 1.46891 * 111.00089 * 214.15831 * 13 12 11 15 15 H 1.09002 * 109.47621 * 308.17323 * 14 13 12 16 16 C 1.50707 * 109.47113 * 188.17504 * 14 13 12 17 17 N 1.34774 * 119.99877 * 179.97438 * 16 14 13 18 18 O 1.21279 * 119.99473 * 0.02562 * 16 14 13 19 19 C 1.50696 * 109.47380 * 68.17596 * 14 13 12 20 20 C 1.38231 * 120.00005 * 83.39662 * 19 14 13 21 21 C 1.38245 * 120.00129 * 180.25590 * 20 19 14 22 22 C 1.38238 * 119.99724 * 359.53063 * 21 20 19 23 23 C 1.38231 * 119.99835 * 0.42632 * 22 21 20 24 24 C 1.38235 * 120.00107 * 263.37635 * 19 14 13 25 25 C 1.48531 * 105.81648 * 334.67094 * 13 12 11 26 26 H 0.96998 * 120.00095 * 359.97438 * 1 2 3 27 27 H 0.96705 * 113.99865 * 61.69916 * 10 9 7 28 28 H 1.08993 * 110.30919 * 21.40163 * 11 9 7 29 29 H 1.08997 * 110.39254 * 259.27237 * 11 9 7 30 30 H 1.09001 * 109.91399 * 241.86831 * 12 11 9 31 31 H 1.09005 * 110.08448 * 120.67107 * 12 11 9 32 32 H 0.96993 * 120.00535 * 0.02562 * 17 16 14 33 33 H 0.97005 * 120.00156 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.00080 * 359.97438 * 20 19 14 35 35 H 1.07994 * 120.00107 * 179.72925 * 21 20 19 36 36 H 1.07999 * 120.00171 * 180.21070 * 22 21 20 37 37 H 1.08001 * 119.99893 * 179.78718 * 23 22 21 38 38 H 1.07997 * 119.99892 * 359.97438 * 24 19 14 39 39 H 1.09006 * 110.66729 * 157.64071 * 25 13 12 40 40 H 1.09003 * 110.66652 * 280.77031 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4496 -2.6183 1.1776 11 6 0.3795 -2.6277 -1.2699 12 6 0.5075 -4.1014 -1.6979 13 7 1.3770 -4.7680 -0.7044 14 6 2.1991 -5.8076 -1.3376 15 1 1.5594 -6.4755 -1.9146 16 6 2.9187 -6.5962 -0.2738 17 7 3.7359 -7.6094 -0.6231 18 8 2.7617 -6.3195 0.8965 19 6 3.2073 -5.1626 -2.2531 20 6 4.3957 -4.6774 -1.7401 21 6 5.3184 -4.0809 -2.5792 22 6 5.0568 -3.9783 -3.9327 23 6 3.8688 -4.4642 -4.4457 24 6 2.9440 -5.0563 -3.6060 25 6 2.2270 -3.6958 -0.1263 26 1 -0.4850 0.8400 0.0004 27 1 -0.2286 -1.9342 1.2626 28 1 0.7559 -1.9718 -2.0548 29 1 -0.6595 -2.3884 -1.0436 30 1 0.9600 -4.1626 -2.6877 31 1 -0.4744 -4.5747 -1.7089 32 1 3.8612 -7.8309 -1.5591 33 1 4.1994 -8.1168 0.0615 34 1 4.6015 -4.7603 -0.6832 35 1 6.2450 -3.6980 -2.1777 36 1 5.7790 -3.5153 -4.5887 37 1 3.6628 -4.3809 -5.5027 38 1 2.0158 -5.4360 -4.0069 39 1 2.6043 -3.9900 0.8531 40 1 3.0492 -3.4520 -0.7991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:48 Heat of formation + Delta-G solvation = -70.275382 kcal Electronic energy + Delta-G solvation = -24418.006082 eV Core-core repulsion = 21003.688320 eV Total energy + Delta-G solvation = -3414.317762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82310 -39.60924 -39.23605 -36.53789 -34.72111 -34.16853 -33.04424 -31.98051 -30.58052 -29.71299 -27.76145 -26.08458 -23.67601 -23.01711 -22.17581 -21.35334 -20.81827 -19.11128 -18.39720 -18.01361 -17.41368 -16.92685 -16.65175 -16.47904 -16.13018 -15.76586 -15.47050 -15.31575 -14.82908 -14.66934 -14.30976 -14.08669 -13.72857 -13.44847 -13.23862 -13.14146 -13.02760 -12.75959 -12.50933 -12.33165 -12.18272 -12.15694 -11.96668 -11.68674 -11.07299 -10.87863 -10.61997 -10.56425 -10.09811 -9.78750 -9.66667 -9.21193 -8.20907 -6.36700 0.37078 0.48655 1.38008 1.40362 1.47727 1.66487 2.36875 2.46199 2.81858 3.03620 3.26881 3.73715 3.85100 3.99298 4.08836 4.10281 4.13078 4.27222 4.31644 4.40241 4.50859 4.62242 4.69554 4.81255 4.90698 5.02638 5.12380 5.14200 5.26069 5.48239 5.54247 5.56176 5.59736 5.61928 5.76769 5.90260 5.94091 6.07557 6.08899 6.26895 6.54471 6.67953 7.34445 7.42940 7.51280 8.84658 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.006549 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.888969 B = 4274.661221 C = 5062.255358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.561 4.561 8 H 0.047 0.953 9 C 0.237 3.763 10 O -0.593 6.593 11 C -0.115 4.115 12 C 0.038 3.962 13 N -0.496 5.496 14 C 0.092 3.908 15 H 0.138 0.862 16 C 0.524 3.476 17 N -0.830 5.830 18 O -0.572 6.572 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.105 4.105 25 C 0.062 3.938 26 H 0.269 0.731 27 H 0.369 0.631 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.416 0.584 33 H 0.408 0.592 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.045 0.955 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -12.522 -12.963 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.169 4.169 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.599 4.599 8 H 0.065 0.935 9 C 0.197 3.803 10 O -0.400 6.400 11 C -0.154 4.154 12 C -0.089 4.089 13 N -0.219 5.219 14 C -0.020 4.020 15 H 0.156 0.844 16 C 0.308 3.692 17 N -0.396 5.396 18 O -0.449 6.449 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.148 4.148 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.065 4.065 26 H 0.078 0.922 27 H 0.218 0.782 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.246 0.754 33 H 0.240 0.760 34 H 0.114 0.886 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.064 0.936 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.864 -12.907 -11.760 19.150 hybrid contribution 0.637 1.711 -0.232 1.840 sum 8.501 -11.196 -11.992 18.478 Atomic orbital electron populations 1.69813 1.06769 1.28165 1.50151 1.25665 0.95830 1.02087 0.93301 0.85645 0.78577 0.78929 0.78678 1.19394 1.20191 1.20347 1.21778 0.93158 0.92360 1.52646 0.93468 1.19635 0.87372 0.91190 0.82074 1.86195 1.51547 1.55753 1.46552 1.22636 0.99918 0.93900 0.98925 1.22974 0.97527 0.94168 0.94262 1.64889 1.17668 1.11300 1.28000 1.20966 0.93714 0.95184 0.92114 0.84426 1.20479 0.78918 0.80571 0.89190 1.43529 1.47970 1.34724 1.13345 1.90773 1.64167 1.68578 1.21414 1.20114 0.94845 1.02460 0.95014 1.21004 0.94449 0.99017 0.98827 1.21325 0.99709 0.99281 0.94448 1.21492 0.98108 0.98780 0.94990 1.21477 0.93581 0.97614 1.01055 1.21280 1.00081 0.99333 0.91660 1.23211 0.95085 0.90116 0.98073 0.92151 0.78245 0.93625 0.93418 0.91603 0.90134 0.75352 0.75978 0.88639 0.85146 0.83677 0.83132 0.83734 0.93618 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.58 11.00 21.45 0.24 -50.34 16 2 C 0.03 1.76 5.28 84.66 0.45 2.20 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.56 -32.07 8.14 25.60 0.21 -31.86 16 8 H 0.05 2.71 7.78 -2.91 -0.02 2.69 16 9 C 0.24 12.80 0.95 -10.33 -0.01 12.79 16 10 O -0.59 -34.85 13.10 -148.98 -1.95 -36.80 16 11 C -0.11 -5.53 5.26 31.47 0.17 -5.36 16 12 C 0.04 1.45 6.46 86.45 0.56 2.00 16 13 N -0.50 -20.21 4.92 -866.64 -4.27 -24.48 16 14 C 0.09 2.77 2.44 43.43 0.11 2.88 16 15 H 0.14 3.20 8.00 -2.39 -0.02 3.18 16 16 C 0.52 16.49 5.86 87.66 0.51 17.01 16 17 N -0.83 -16.14 8.77 -173.53 -1.52 -17.66 16 18 O -0.57 -24.75 15.75 -3.03 -0.05 -24.80 16 19 C -0.12 -3.30 3.64 -19.87 -0.07 -3.38 16 20 C -0.11 -3.35 6.61 22.27 0.15 -3.20 16 21 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 22 C -0.12 -2.41 10.05 22.27 0.22 -2.18 16 23 C -0.12 -2.33 10.05 22.27 0.22 -2.10 16 24 C -0.11 -2.29 8.14 22.27 0.18 -2.10 16 25 C 0.06 3.01 4.29 86.65 0.37 3.38 16 26 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.37 21.61 7.46 -74.05 -0.55 21.05 16 28 H 0.04 2.27 7.84 -2.39 -0.02 2.25 16 29 H 0.05 2.42 7.99 -2.39 -0.02 2.40 16 30 H 0.07 2.12 5.35 -2.39 -0.01 2.11 16 31 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 32 H 0.42 5.31 8.72 -92.71 -0.81 4.50 16 33 H 0.41 6.87 8.93 -92.70 -0.83 6.05 16 34 H 0.10 3.24 6.83 -2.91 -0.02 3.22 16 35 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.14 2.45 7.69 -2.91 -0.02 2.43 16 39 H 0.05 2.50 6.98 -2.38 -0.02 2.48 16 40 H 0.07 3.04 4.37 -2.39 -0.01 3.03 16 Total: -1.00 -73.95 320.18 -3.33 -77.28 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -1.09 Total: 44.12 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 3.29 Total: -12.97 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -5.55 Total: -92.48 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -2.00 Total: -61.60 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -73.95 -3.33 -77.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.000 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds