Wall clock time and date at job start Tue Mar 31 2020 03:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 119.99503 * 2 1 4 4 C 1.38231 * 119.99892 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.00319 * 180.02562 * 4 3 2 6 6 C 1.38243 * 120.00070 * 359.90902 * 4 3 2 7 7 C 1.38235 * 119.99602 * 0.07188 * 6 4 3 8 8 C 1.50701 * 119.99808 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 89.99755 * 8 7 6 10 10 O 1.21286 * 119.99909 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00373 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00345 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47502 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99894 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00347 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99986 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00161 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00090 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00389 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99773 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46938 * 90.00303 * 20 18 16 22 22 H 1.48499 * 109.47093 * 209.99772 * 20 18 16 23 23 H 1.48492 * 109.47205 * 330.00181 * 20 18 16 24 24 C 1.38230 * 120.00326 * 359.97438 * 7 6 4 25 25 H 1.08999 * 109.46630 * 269.97351 * 1 2 3 26 26 H 1.08992 * 109.47454 * 29.97431 * 1 2 3 27 27 H 1.08996 * 109.46937 * 149.97950 * 1 2 3 28 28 H 1.07997 * 120.00455 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47060 * 269.91029 * 5 4 3 30 30 H 1.08998 * 109.46941 * 29.90973 * 5 4 3 31 31 H 1.08998 * 109.47482 * 149.91122 * 5 4 3 32 32 H 1.08000 * 119.99728 * 180.34119 * 6 4 3 33 33 H 1.08993 * 109.47341 * 210.00461 * 8 7 6 34 34 H 1.09001 * 109.46864 * 330.00546 * 8 7 6 35 35 H 0.97000 * 119.99770 * 0.02562 * 11 9 8 36 36 H 1.09003 * 109.47200 * 300.00077 * 12 11 9 37 37 H 1.09001 * 109.47323 * 60.00059 * 12 11 9 38 38 H 0.96999 * 119.99881 * 359.97438 * 15 13 12 39 39 H 0.96990 * 119.99973 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.00371 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.3339 2.5025 0.0000 6 6 4.2717 0.0001 0.0008 7 6 3.5806 -1.1970 0.0012 8 6 4.3341 -2.5021 0.0021 9 6 4.5849 -2.9364 1.4233 10 8 4.1902 -2.2536 2.3446 11 7 5.2470 -4.0840 1.6704 12 6 5.4903 -4.5064 3.0518 13 6 6.2439 -5.8114 3.0528 14 8 6.5475 -6.3372 2.0028 15 7 6.5797 -6.3948 4.2205 16 6 7.2649 -7.5823 4.2213 17 1 7.5352 -8.0504 3.2863 18 6 7.6106 -8.1841 5.4250 19 7 8.2678 -9.3221 5.4259 20 14 7.1424 -7.3747 7.0422 21 1 5.8054 -7.8596 7.4696 22 1 8.1486 -7.7203 8.0783 23 1 7.1010 -5.9010 6.8645 24 6 2.1983 -1.1971 0.0008 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6581 2.1325 0.0004 29 1 4.5166 2.8170 -1.0275 30 1 3.7443 3.2621 0.5132 31 1 5.2858 2.3723 0.5148 32 1 5.3517 0.0003 0.0060 33 1 3.7453 -3.2620 -0.5115 34 1 5.2867 -2.3719 -0.5114 35 1 5.5624 -4.6303 0.9335 36 1 6.0793 -3.7467 3.5657 37 1 4.5376 -4.6363 3.5653 38 1 6.3366 -5.9745 5.0602 39 1 8.5095 -9.7419 6.2662 40 1 1.6583 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597651680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:19 Heat of formation + Delta-G solvation = -86.395584 kcal Electronic energy + Delta-G solvation = -21702.685617 eV Core-core repulsion = 18287.668830 eV Total energy + Delta-G solvation = -3415.016787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25473 -40.46007 -39.68847 -36.30347 -35.30342 -34.45345 -34.35197 -33.84306 -30.40477 -28.68135 -27.77782 -27.53822 -26.07442 -22.44126 -21.60146 -21.48381 -21.08714 -20.43864 -18.48438 -17.44184 -17.18270 -17.06181 -16.96262 -16.50222 -16.48409 -15.49792 -15.39863 -15.10965 -14.91289 -14.63803 -14.27644 -14.00320 -13.97764 -13.89981 -13.81186 -13.75922 -13.31780 -13.13370 -12.95945 -12.52029 -12.46069 -12.34436 -12.01719 -11.88261 -11.83094 -11.59496 -11.04239 -10.67230 -10.34787 -10.17122 -9.49983 -9.40051 -8.46775 -6.08798 0.42900 0.50280 1.29903 1.32778 1.42651 1.60863 1.78605 2.05418 2.19288 2.80378 2.94151 3.09394 3.66683 3.88109 3.89572 3.96711 4.09042 4.25883 4.34326 4.40819 4.42737 4.46650 4.55273 4.63522 4.72771 4.72840 4.82209 4.86122 5.02074 5.08539 5.25266 5.30531 5.38628 5.47542 5.64515 5.66927 5.75058 5.86986 6.17604 6.46781 6.52636 6.76992 7.17477 7.29076 7.76534 8.69646 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.002627 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.226004 B =10657.670139 C =10674.497321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.094 4.094 5 C -0.111 4.111 6 C -0.130 4.130 7 C -0.070 4.070 8 C -0.096 4.096 9 C 0.517 3.483 10 O -0.574 6.574 11 N -0.711 5.711 12 C 0.118 3.882 13 C 0.445 3.555 14 O -0.613 6.613 15 N -0.579 5.579 16 C -0.331 4.331 17 H 0.064 0.936 18 C -0.008 4.008 19 N -0.925 5.925 20 Si 0.959 3.041 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.234 1.234 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.415 0.585 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.391 0.609 39 H 0.281 0.719 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.211 22.913 -9.333 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.168 4.168 6 C -0.148 4.148 7 C -0.070 4.070 8 C -0.135 4.135 9 C 0.305 3.695 10 O -0.454 6.454 11 N -0.366 5.366 12 C -0.010 4.010 13 C 0.233 3.767 14 O -0.499 6.499 15 N -0.219 5.219 16 C -0.460 4.460 17 H 0.082 0.918 18 C -0.208 4.208 19 N -0.565 5.565 20 Si 0.779 3.221 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.157 1.157 24 C -0.148 4.148 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.253 0.747 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.227 0.773 39 H 0.091 0.909 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.174 22.852 -9.255 27.954 hybrid contribution 0.416 -0.714 0.809 1.156 sum -12.758 22.138 -8.446 26.911 Atomic orbital electron populations 1.20813 0.89572 1.03683 1.02731 1.20201 0.97385 0.92938 0.98897 1.21166 0.93661 0.98190 1.02085 1.20203 0.94350 0.95974 0.98894 1.20813 0.99799 0.93061 1.03111 1.21067 1.00066 0.91895 1.01764 1.19429 0.93886 0.93999 0.99694 1.20705 1.03905 0.96392 0.92496 1.21046 0.76518 0.79529 0.92439 1.90697 1.52296 1.54734 1.47662 1.45771 1.58056 1.24367 1.08386 1.20849 1.01028 0.93319 0.85803 1.20512 0.84251 0.88106 0.83852 1.90527 1.59978 1.67140 1.32296 1.41948 1.51292 1.21160 1.07464 1.19034 1.33468 0.98260 0.95284 0.91779 1.26061 0.95896 0.96266 1.02559 1.69775 1.38940 1.18337 1.29448 0.85448 0.79377 0.80215 0.77100 1.18090 1.19787 1.15727 1.21067 0.93578 0.98385 1.01756 0.91066 0.90202 0.90895 0.84452 0.89989 0.90648 0.91528 0.85731 0.85608 0.85627 0.74678 0.88159 0.88054 0.77271 0.90898 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.09 -1.87 5.88 -19.87 -0.12 -1.99 16 3 C -0.13 -2.52 9.36 22.27 0.21 -2.32 16 4 C -0.09 -1.87 5.88 -19.86 -0.12 -1.99 16 5 C -0.11 -1.56 10.01 71.24 0.71 -0.84 16 6 C -0.13 -2.86 9.36 22.27 0.21 -2.65 16 7 C -0.07 -1.58 4.37 -19.87 -0.09 -1.67 16 8 C -0.10 -1.91 5.83 29.10 0.17 -1.74 16 9 C 0.52 14.40 7.82 87.66 0.69 15.08 16 10 O -0.57 -20.03 16.03 -3.05 -0.05 -20.08 16 11 N -0.71 -20.91 5.53 -466.80 -2.58 -23.49 16 12 C 0.12 3.83 6.15 85.63 0.53 4.36 16 13 C 0.45 19.25 7.85 87.66 0.69 19.94 16 14 O -0.61 -31.23 15.24 -3.08 -0.05 -31.28 16 15 N -0.58 -26.56 5.09 -306.98 -1.56 -28.12 16 16 C -0.33 -18.77 10.16 84.04 0.85 -17.91 16 17 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 18 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 19 N -0.93 -54.25 13.96 21.66 0.30 -53.95 16 20 Si 0.96 38.10 27.74 68.60 1.90 40.00 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 24 C -0.13 -2.86 9.36 22.27 0.21 -2.65 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 27 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 28 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 32 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.13 1.95 8.08 -2.39 -0.02 1.93 16 34 H 0.13 1.95 8.09 -2.39 -0.02 1.93 16 35 H 0.41 12.00 7.44 -92.71 -0.69 11.31 16 36 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.39 15.13 5.76 -92.71 -0.53 14.60 16 39 H 0.28 15.07 8.31 -92.72 -0.77 14.30 16 40 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -74.90 346.02 2.87 -72.03 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -0.22 Total: 40.06 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.12 Total: 4.83 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -3.84 Total: -105.56 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -0.10 Total: -51.36 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Total: -74.90 2.87 -72.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597651680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.365 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds