Wall clock time and date at job start Tue Mar 31 2020 03:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.46916 * 2 1 4 4 C 1.46502 * 119.99975 * 89.40322 * 3 2 1 5 5 C 1.50700 * 109.47154 * 89.99665 * 4 3 2 6 6 H 1.08001 * 119.99875 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00045 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00080 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47153 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47277 * 120.00162 * 9 7 5 12 12 H 1.48503 * 109.46933 * 240.00305 * 9 7 5 13 13 C 1.34777 * 120.00218 * 269.39582 * 3 2 1 14 14 O 1.21624 * 120.00381 * 186.22279 * 13 3 2 15 15 C 1.47318 * 119.99679 * 6.23313 * 13 3 2 16 16 C 1.37822 * 126.52611 * 8.52393 * 15 13 3 17 17 N 1.34781 * 108.24860 * 180.02562 * 16 15 13 18 18 H 0.97004 * 125.36090 * 179.97438 * 17 16 15 19 19 C 1.37305 * 109.27223 * 359.97438 * 17 16 15 20 20 C 1.48003 * 125.76177 * 179.97438 * 19 17 16 21 21 N 1.34182 * 126.69568 * 179.71330 * 20 19 17 22 22 N 1.28987 * 107.25239 * 179.87647 * 21 20 19 23 23 N 1.28716 * 108.98518 * 0.39837 * 22 21 20 24 24 H 0.96999 * 125.31984 * 179.77074 * 23 22 21 25 25 N 1.28868 * 109.35794 * 359.74650 * 23 22 21 26 26 C 1.35697 * 108.47353 * 359.72909 * 19 17 16 27 27 H 1.08996 * 109.46810 * 299.99997 * 1 2 3 28 28 H 1.08995 * 109.47136 * 60.00058 * 1 2 3 29 29 H 1.08997 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46960 * 119.99946 * 2 1 3 31 31 H 1.08996 * 109.46810 * 240.00003 * 2 1 3 32 32 H 1.08999 * 109.46980 * 209.99442 * 4 3 2 33 33 H 1.08992 * 109.47150 * 329.99767 * 4 3 2 34 34 H 0.97002 * 119.99646 * 180.02562 * 8 7 5 35 35 H 1.07995 * 125.87446 * 359.97438 * 16 15 13 36 36 H 1.08004 * 126.47229 * 180.28523 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2500 2.0762 1.2687 5 6 3.6689 1.8409 1.7185 6 1 4.3319 1.2347 1.1191 7 6 4.1210 2.4005 2.8948 8 7 3.3137 3.1391 3.6244 9 14 5.8800 2.1094 3.4521 10 1 6.5771 1.2497 2.4620 11 1 6.5862 3.4111 3.5622 12 1 5.8749 1.4354 4.7753 13 6 2.2545 2.0125 -1.1671 14 8 2.7658 3.1160 -1.1690 15 6 1.8932 1.3658 -2.4405 16 6 1.1666 0.2048 -2.5938 17 7 1.0537 -0.0516 -3.9122 18 1 0.5897 -0.8106 -4.2988 19 6 1.6991 0.9309 -4.6217 20 6 1.8023 1.0070 -6.0962 21 7 2.4228 1.9600 -6.8084 22 7 2.2845 1.6573 -8.0546 23 7 1.6025 0.5697 -8.1482 24 1 1.3572 0.1312 -8.9779 25 7 1.2970 0.1542 -6.9673 26 6 2.2217 1.8232 -3.7430 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.0844 3.1449 1.1330 33 1 1.5618 1.6947 2.0229 34 1 3.6319 3.5330 4.4518 35 1 0.7585 -0.3965 -1.7949 36 1 2.7840 2.7120 -3.9886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825419200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:54 Heat of formation + Delta-G solvation = 160.716102 kcal Electronic energy + Delta-G solvation = -22308.381130 eV Core-core repulsion = 18832.832318 eV Total energy + Delta-G solvation = -3475.548812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.66054 -41.40468 -38.46942 -35.40667 -34.58607 -33.57932 -32.81645 -31.19999 -30.52501 -29.08684 -27.00380 -24.79382 -24.25688 -23.24548 -23.01392 -21.20746 -20.68192 -19.48610 -18.86547 -17.40800 -17.37631 -16.35954 -16.07474 -15.21077 -14.82477 -14.65770 -14.24744 -14.05313 -13.75852 -13.47022 -13.06672 -12.83488 -12.48956 -12.19177 -11.97328 -11.72460 -11.68182 -11.61106 -11.36645 -11.23830 -11.13740 -10.85053 -10.69821 -10.47550 -10.04232 -9.53975 -8.93741 -8.87572 -8.36133 -8.10517 -7.55995 -5.96674 -4.00338 0.72307 1.28940 1.96579 2.10521 2.80097 2.85866 3.35725 3.43665 3.48056 3.56048 4.07074 4.16686 4.24725 4.53014 4.94686 5.03993 5.13994 5.22465 5.31323 5.36915 5.41873 5.54947 5.68221 5.83553 6.01760 6.10019 6.16158 6.22243 6.48493 6.64474 6.80422 7.17722 7.26036 7.53394 7.65896 7.91802 8.00990 8.32478 8.54584 9.00819 9.25840 9.64736 11.11399 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.003498 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.974390 B = 8003.670115 C = 8609.135472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.089 3.911 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.521 4.521 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.285 1.285 13 C 0.574 3.426 14 O -0.536 6.536 15 C -0.208 4.208 16 C 0.037 3.963 17 N -0.531 5.531 18 H 0.420 0.580 19 C 0.043 3.957 20 C 0.261 3.739 21 N -0.257 5.257 22 N -0.046 5.046 23 N -0.229 5.229 24 H 0.474 0.526 25 N -0.315 5.315 26 C -0.060 4.060 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.211 0.789 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 -11.983 -19.530 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.035 4.035 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.211 1.211 13 C 0.361 3.639 14 O -0.414 6.414 15 C -0.218 4.218 16 C -0.102 4.102 17 N -0.125 5.125 18 H 0.258 0.742 19 C -0.069 4.069 20 C -0.019 4.019 21 N -0.130 5.130 22 N -0.042 5.042 23 N -0.075 5.075 24 H 0.328 0.672 25 N -0.167 5.167 26 C -0.088 4.088 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.227 0.773 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.522 -11.112 -20.011 24.424 hybrid contribution 0.405 -1.068 0.064 1.144 sum -8.117 -12.180 -19.947 24.741 Atomic orbital electron populations 1.22492 0.97133 1.01640 1.03355 1.21878 0.93176 0.85167 1.03293 1.48052 1.64081 1.12808 1.07557 1.19266 0.96346 0.93477 0.77991 1.21506 0.97191 1.31393 1.05942 0.92317 1.24931 0.97720 0.95019 0.96520 1.69944 1.35480 1.33546 1.14636 0.86460 0.84807 0.78050 0.78205 1.19790 1.20912 1.21124 1.17288 0.78963 0.85271 0.82332 1.90764 1.43218 1.20536 1.86886 1.20050 1.08477 0.98605 0.94643 1.24120 1.02028 0.99254 0.84779 1.41627 1.42819 1.21862 1.06213 0.74201 1.16402 1.10295 0.96086 0.84076 1.22558 0.96235 0.89230 0.93835 1.76214 1.19385 1.22227 0.95191 1.78952 1.09694 1.00829 1.14704 1.47604 1.34432 1.16974 1.08486 0.67169 1.74928 1.24720 1.25963 0.91117 1.21047 0.99327 0.98641 0.89784 0.91214 0.91986 0.91921 0.89736 0.90433 0.93910 0.94973 0.92879 0.77281 0.82421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 8.81 37.16 0.33 -1.89 16 2 C 0.09 1.35 5.58 -4.04 -0.02 1.32 16 3 N -0.59 -12.54 2.46 -176.37 -0.43 -12.98 16 4 C 0.25 6.48 5.12 -5.19 -0.03 6.45 16 5 C -0.52 -14.91 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 13 C 0.57 12.57 7.65 -12.57 -0.10 12.47 16 14 O -0.54 -14.28 16.58 5.26 0.09 -14.20 16 15 C -0.21 -3.49 5.95 -104.96 -0.62 -4.12 16 16 C 0.04 0.44 8.61 -16.41 -0.14 0.30 16 17 N -0.53 -5.45 6.01 -9.19 -0.06 -5.50 16 18 H 0.42 2.88 8.96 -40.82 -0.37 2.51 16 19 C 0.04 0.57 7.08 -82.32 -0.58 -0.01 16 20 C 0.26 3.25 8.20 -156.26 -1.28 1.97 16 21 N -0.26 -3.45 12.52 32.09 0.40 -3.05 16 22 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 23 N -0.23 -1.70 7.90 60.35 0.48 -1.22 16 24 H 0.47 1.06 8.96 -340.35 -3.05 -1.99 16 25 N -0.31 -3.07 12.41 32.11 0.40 -2.67 16 26 C -0.06 -0.95 10.60 -39.09 -0.41 -1.36 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.70 6.27 -51.93 -0.33 0.38 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 31 H 0.08 0.98 4.82 -51.93 -0.25 0.73 16 32 H 0.04 1.27 7.52 -51.93 -0.39 0.88 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.21 2.01 3.12 -52.49 -0.16 1.84 16 36 H 0.16 2.61 8.06 -52.48 -0.42 2.19 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -37.16 314.19 -7.34 -44.51 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.20 Total: -2.52 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -3.28 Total: 1.51 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 2.34 Total: -51.17 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.20 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.16 -7.34 -44.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825419200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.222 kcal (2) G-P(sol) polarization free energy of solvation -37.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds