Wall clock time and date at job start Tue Mar 31 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.46916 * 2 1 4 4 C 1.46502 * 119.99975 * 89.40322 * 3 2 1 5 5 C 1.50700 * 109.47154 * 89.99665 * 4 3 2 6 6 H 1.08001 * 119.99875 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00045 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00080 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47153 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47277 * 120.00162 * 9 7 5 12 12 H 1.48503 * 109.46933 * 240.00305 * 9 7 5 13 13 C 1.34777 * 120.00218 * 269.39582 * 3 2 1 14 14 O 1.21624 * 120.00381 * 186.22279 * 13 3 2 15 15 C 1.47318 * 119.99679 * 6.23313 * 13 3 2 16 16 C 1.37822 * 126.52611 * 8.52393 * 15 13 3 17 17 N 1.34781 * 108.24860 * 180.02562 * 16 15 13 18 18 H 0.97004 * 125.36090 * 179.97438 * 17 16 15 19 19 C 1.37305 * 109.27223 * 359.97438 * 17 16 15 20 20 C 1.48003 * 125.76177 * 179.97438 * 19 17 16 21 21 N 1.34182 * 126.69568 * 179.71330 * 20 19 17 22 22 N 1.28987 * 107.25239 * 179.87647 * 21 20 19 23 23 N 1.28716 * 108.98518 * 0.39837 * 22 21 20 24 24 H 0.96999 * 125.31984 * 179.77074 * 23 22 21 25 25 N 1.28868 * 109.35794 * 359.74650 * 23 22 21 26 26 C 1.35697 * 108.47353 * 359.72909 * 19 17 16 27 27 H 1.08996 * 109.46810 * 299.99997 * 1 2 3 28 28 H 1.08995 * 109.47136 * 60.00058 * 1 2 3 29 29 H 1.08997 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46960 * 119.99946 * 2 1 3 31 31 H 1.08996 * 109.46810 * 240.00003 * 2 1 3 32 32 H 1.08999 * 109.46980 * 209.99442 * 4 3 2 33 33 H 1.08992 * 109.47150 * 329.99767 * 4 3 2 34 34 H 0.97002 * 119.99646 * 180.02562 * 8 7 5 35 35 H 1.07995 * 125.87446 * 359.97438 * 16 15 13 36 36 H 1.08004 * 126.47229 * 180.28523 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2500 2.0762 1.2687 5 6 3.6689 1.8409 1.7185 6 1 4.3319 1.2347 1.1191 7 6 4.1210 2.4005 2.8948 8 7 3.3137 3.1391 3.6244 9 14 5.8800 2.1094 3.4521 10 1 6.5771 1.2497 2.4620 11 1 6.5862 3.4111 3.5622 12 1 5.8749 1.4354 4.7753 13 6 2.2545 2.0125 -1.1671 14 8 2.7658 3.1160 -1.1690 15 6 1.8932 1.3658 -2.4405 16 6 1.1666 0.2048 -2.5938 17 7 1.0537 -0.0516 -3.9122 18 1 0.5897 -0.8106 -4.2988 19 6 1.6991 0.9309 -4.6217 20 6 1.8023 1.0070 -6.0962 21 7 2.4228 1.9600 -6.8084 22 7 2.2845 1.6573 -8.0546 23 7 1.6025 0.5697 -8.1482 24 1 1.3572 0.1312 -8.9779 25 7 1.2970 0.1542 -6.9673 26 6 2.2217 1.8232 -3.7430 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.0844 3.1449 1.1330 33 1 1.5618 1.6947 2.0229 34 1 3.6319 3.5330 4.4518 35 1 0.7585 -0.3965 -1.7949 36 1 2.7840 2.7120 -3.9886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825419200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:53 Heat of formation + Delta-G solvation = 131.357298 kcal Electronic energy + Delta-G solvation = -22309.654223 eV Core-core repulsion = 18832.832318 eV Total energy + Delta-G solvation = -3476.821905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.50370 -42.53964 -40.09020 -37.03981 -35.46157 -34.99696 -34.37604 -32.42870 -32.00731 -30.21346 -28.91044 -25.72961 -25.55411 -24.70600 -24.35301 -22.57992 -21.76902 -20.47176 -19.96579 -18.76744 -18.47762 -18.20783 -17.43568 -16.93819 -16.19771 -15.99262 -15.86128 -15.16107 -15.12880 -14.75051 -14.36721 -14.18968 -14.07023 -13.47716 -13.35569 -13.23008 -13.04846 -12.82979 -12.63122 -12.48396 -12.43436 -12.24460 -12.18957 -12.05103 -11.78497 -11.63698 -10.68188 -10.59687 -10.10483 -9.36058 -9.16502 -8.17128 -6.31084 -0.11351 0.33483 0.84336 1.34055 1.38464 1.41952 1.53596 1.77213 1.85632 2.32952 2.48149 2.68471 2.79341 3.11993 3.29235 3.83487 4.00800 4.09606 4.17482 4.25556 4.36929 4.41884 4.65875 4.72846 4.94429 5.05357 5.05940 5.12341 5.29607 5.46783 5.51691 5.57682 5.64954 5.66637 5.94978 6.13678 6.42287 6.77557 6.90521 7.06423 7.34666 7.60581 8.89712 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.003498 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.974390 B = 8003.670115 C = 8609.135472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.078 3.922 3 N -0.598 5.598 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.565 3.435 14 O -0.605 6.605 15 C -0.246 4.246 16 C 0.080 3.920 17 N -0.501 5.501 18 H 0.444 0.556 19 C 0.061 3.939 20 C 0.244 3.756 21 N -0.294 5.294 22 N -0.052 5.052 23 N -0.194 5.194 24 H 0.496 0.504 25 N -0.294 5.294 26 C -0.089 4.089 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.110 0.890 32 H -0.007 1.007 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.243 0.757 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 -15.658 -21.288 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.044 4.044 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.356 3.644 14 O -0.488 6.488 15 C -0.256 4.256 16 C -0.061 4.061 17 N -0.097 5.097 18 H 0.287 0.713 19 C -0.052 4.052 20 C -0.036 4.036 21 N -0.166 5.166 22 N -0.047 5.047 23 N -0.045 5.045 24 H 0.356 0.644 25 N -0.147 5.147 26 C -0.117 4.117 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.011 0.989 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.258 0.742 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.569 -14.869 -21.823 28.088 hybrid contribution 0.636 0.007 0.444 0.776 sum -8.933 -14.863 -21.379 27.528 Atomic orbital electron populations 1.22447 0.94020 1.04671 1.02739 1.22322 0.95709 0.81712 1.04610 1.48048 1.64054 1.14977 1.05705 1.18715 0.95400 0.91318 0.80300 1.21764 0.98233 1.31569 1.06204 0.93090 1.25834 1.02190 0.94564 0.96583 1.70056 1.37527 1.34206 1.15103 0.85390 0.79226 0.77932 0.78377 1.19309 1.20958 1.19190 1.18048 0.77734 0.84656 0.83960 1.90705 1.46523 1.23602 1.88001 1.19550 1.12431 1.01322 0.92263 1.24240 0.99036 0.96909 0.85894 1.41540 1.41308 1.21558 1.05315 0.71349 1.16196 1.09070 0.95570 0.84403 1.22424 0.97483 0.89974 0.93735 1.76218 1.20673 1.23497 0.96211 1.78915 1.10342 1.01726 1.13721 1.47709 1.32137 1.15746 1.08947 0.64391 1.74885 1.23648 1.24889 0.91317 1.20901 1.00981 0.99320 0.90472 0.93418 0.91158 0.86885 0.90315 0.87242 0.98857 0.95231 0.92478 0.74192 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.81 71.98 0.63 -3.10 16 2 C 0.08 2.24 5.58 86.38 0.48 2.72 16 3 N -0.60 -26.14 2.46 -830.17 -2.04 -28.18 16 4 C 0.26 14.60 5.12 85.63 0.44 15.03 16 5 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 9 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 C 0.57 26.08 7.65 86.63 0.66 26.74 16 14 O -0.61 -35.04 16.58 -4.11 -0.07 -35.11 16 15 C -0.25 -8.30 5.95 -20.08 -0.12 -8.42 16 16 C 0.08 1.67 8.61 84.14 0.72 2.39 16 17 N -0.50 -8.39 6.01 -183.00 -1.10 -9.49 16 18 H 0.44 3.69 8.96 -92.71 -0.83 2.86 16 19 C 0.06 1.49 7.08 40.29 0.29 1.77 16 20 C 0.24 5.61 8.20 137.15 1.13 6.74 16 21 N -0.29 -7.67 12.52 -52.37 -0.66 -8.33 16 22 N -0.05 -1.02 13.47 37.02 0.50 -0.52 16 23 N -0.19 -2.26 7.90 37.02 0.29 -1.97 16 24 H 0.50 0.35 8.96 -347.52 -3.12 -2.77 16 25 N -0.29 -4.74 12.41 -52.32 -0.65 -5.39 16 26 C -0.09 -2.90 10.60 22.59 0.24 -2.66 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.35 6.27 -2.39 -0.01 1.34 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 2.37 8.08 -2.38 -0.02 2.35 16 31 H 0.11 2.41 4.82 -2.39 -0.01 2.40 16 32 H -0.01 -0.43 7.52 -2.39 -0.02 -0.45 16 33 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.24 3.43 3.12 -2.91 -0.01 3.42 16 36 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -88.61 314.19 0.99 -87.61 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -2.77 Total: -0.20 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.17 Total: 10.29 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -3.37 Total: -110.81 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.07 Total: -35.11 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -88.61 0.99 -87.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825419200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.972 kcal (2) G-P(sol) polarization free energy of solvation -88.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds