Wall clock time and date at job start Tue Mar 31 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00281 * 2 1 4 4 H 1.48499 * 109.46888 * 269.99995 * 3 2 1 5 5 H 1.48495 * 109.46876 * 29.99864 * 3 2 1 6 6 H 1.48493 * 109.47157 * 150.00231 * 3 2 1 7 7 C 1.37880 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00170 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46909 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00476 * 180.02562 * 12 11 10 14 14 O 1.21716 * 119.99357 * 359.97438 * 13 12 11 15 15 C 1.46606 * 120.00362 * 180.02562 * 13 12 11 16 16 C 1.38035 * 126.00789 * 180.02562 * 15 13 12 17 17 C 1.39390 * 107.42574 * 179.73510 * 16 15 13 18 18 C 1.37748 * 107.65494 * 359.97438 * 17 16 15 19 19 C 1.47917 * 125.81638 * 179.97438 * 18 17 16 20 20 N 1.34210 * 126.69915 * 179.70598 * 19 18 17 21 21 N 1.28981 * 107.24853 * 179.89710 * 20 19 18 22 22 N 1.28714 * 108.99716 * 0.37821 * 21 20 19 23 23 H 0.97002 * 125.31750 * 179.78876 * 22 21 20 24 24 N 1.28868 * 109.36652 * 359.76294 * 22 21 20 25 25 N 1.36389 * 108.36210 * 359.97438 * 18 17 16 26 26 H 0.96997 * 125.70835 * 180.02562 * 25 18 17 27 27 H 0.97005 * 120.00388 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47348 * 59.99699 * 9 7 2 29 29 H 1.09000 * 109.47116 * 299.99293 * 9 7 2 30 30 H 1.09004 * 109.46965 * 60.00054 * 10 9 7 31 31 H 1.08990 * 109.47274 * 299.99609 * 10 9 7 32 32 H 1.08996 * 109.47150 * 60.00115 * 11 10 9 33 33 H 1.09003 * 109.46993 * 300.00230 * 11 10 9 34 34 H 0.97004 * 120.00003 * 0.02562 * 12 11 10 35 35 H 1.08000 * 126.28381 * 359.71076 * 16 15 13 36 36 H 1.08002 * 126.17185 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0023 11 6 5.5514 -2.6367 0.0022 12 7 6.0398 -4.0179 0.0027 13 6 7.3648 -4.2642 0.0033 14 8 8.1557 -3.3391 0.0029 15 6 7.8534 -5.6465 0.0032 16 6 9.1767 -6.0394 0.0043 17 6 9.1983 -7.4331 0.0099 18 6 7.8923 -7.8711 0.0128 19 6 7.4531 -9.2836 0.0184 20 7 6.1874 -9.7299 0.0269 21 7 6.2364 -11.0188 0.0271 22 7 7.4685 -11.3913 0.0273 23 1 7.7762 -12.3112 0.0304 24 7 8.2294 -10.3512 0.0221 25 7 7.0733 -6.7805 0.0097 26 1 6.1036 -6.8008 0.0111 27 1 -0.4851 0.8401 0.0004 28 1 3.8744 -0.6801 0.8910 29 1 3.8751 -0.6806 -0.8889 30 1 3.6584 -3.1511 -0.8875 31 1 3.6578 -3.1499 0.8924 32 1 5.9148 -2.1222 0.8917 33 1 5.9147 -2.1235 -0.8882 34 1 5.4094 -4.7552 0.0026 35 1 10.0372 -5.3867 0.0009 36 1 10.0799 -8.0569 0.0117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826381791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:48 Heat of formation + Delta-G solvation = 119.605196 kcal Electronic energy + Delta-G solvation = -21121.300345 eV Core-core repulsion = 17643.968830 eV Total energy + Delta-G solvation = -3477.331515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.90646 -41.56308 -39.13346 -35.65113 -34.81347 -33.85570 -33.40765 -31.78229 -31.27702 -29.70072 -27.28598 -25.13072 -24.87224 -23.16306 -21.93810 -20.80051 -20.67064 -20.15169 -19.80950 -18.54813 -17.61610 -16.80849 -16.32493 -15.67527 -15.56902 -14.77467 -14.72347 -14.28923 -14.19565 -13.90007 -13.73968 -13.22340 -12.97213 -12.70793 -12.50134 -12.08620 -11.96619 -11.85848 -11.63408 -11.38593 -11.13852 -10.92167 -10.41712 -10.05627 -9.85306 -9.69601 -9.42944 -9.25321 -9.06690 -8.57228 -8.42118 -6.07811 -4.06878 0.41817 0.82414 1.68681 1.69567 2.48757 2.61293 3.13064 3.25054 3.29174 3.30459 3.38212 3.42044 3.82214 4.43051 4.66976 4.73845 4.91825 4.95391 5.07227 5.26177 5.46529 5.59249 5.63747 5.82346 5.89801 5.94789 6.20269 6.23918 6.38674 6.46061 6.60295 6.73129 6.85085 7.19183 7.32796 7.45531 7.65670 7.73899 8.10128 8.48217 8.95787 9.54204 11.05376 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.002621 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.151052 B =10681.331211 C =11841.727389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.115 4.115 11 C 0.114 3.886 12 N -0.723 5.723 13 C 0.582 3.418 14 O -0.525 6.525 15 C -0.010 4.010 16 C -0.114 4.114 17 C -0.140 4.140 18 C 0.101 3.899 19 C 0.244 3.756 20 N -0.275 5.275 21 N -0.042 5.042 22 N -0.224 5.224 23 H 0.478 0.522 24 N -0.280 5.280 25 N -0.515 5.515 26 H 0.425 0.575 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.395 0.605 35 H 0.159 0.841 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.988 -23.025 0.061 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.153 4.153 11 C -0.008 4.008 12 N -0.374 5.374 13 C 0.368 3.632 14 O -0.401 6.401 15 C -0.127 4.127 16 C -0.139 4.139 17 C -0.168 4.168 18 C -0.018 4.018 19 C -0.036 4.036 20 N -0.149 5.149 21 N -0.037 5.037 22 N -0.071 5.071 23 H 0.333 0.667 24 N -0.132 5.132 25 N -0.112 5.112 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.228 0.772 35 H 0.177 0.823 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 18.732 -22.653 0.071 29.395 hybrid contribution -0.089 0.141 -0.022 0.168 sum 18.643 -22.511 0.049 29.229 Atomic orbital electron populations 1.69907 1.06336 1.26995 1.50894 1.25031 0.94751 0.99264 0.94434 0.86772 0.80409 0.83500 0.78606 1.20225 1.21361 1.18859 1.21084 0.89276 0.94521 1.51228 0.91017 1.19500 0.97312 0.91316 0.96745 1.21729 0.90450 1.01267 1.01812 1.21739 0.96294 0.80380 1.02403 1.46108 1.06167 1.10445 1.74643 1.17008 0.82721 0.86244 0.77266 1.90870 1.55345 1.43692 1.50212 1.20762 0.91647 0.85724 1.14604 1.21271 0.94813 0.94467 1.03399 1.21130 0.94283 0.94727 1.06709 1.16843 0.90170 0.80873 1.13964 1.22470 0.86053 0.93051 1.02052 1.76202 1.19858 1.00426 1.18399 1.78914 1.03287 1.07221 1.14269 1.47762 1.02485 1.10998 1.45840 0.66723 1.74991 1.22736 0.93473 1.22036 1.41912 1.09402 1.04385 1.55479 0.73577 0.92667 0.96232 0.96658 0.92053 0.92022 0.91291 0.91301 0.77199 0.82338 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.07 5.27 -26.73 -0.14 -2.21 16 11 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 12 N -0.72 -9.44 5.55 -61.64 -0.34 -9.78 16 13 C 0.58 8.12 7.78 -12.89 -0.10 8.02 16 14 O -0.53 -9.16 16.87 5.17 0.09 -9.07 16 15 C -0.01 -0.11 7.04 -81.95 -0.58 -0.69 16 16 C -0.11 -1.17 10.60 -39.23 -0.42 -1.58 16 17 C -0.14 -1.26 10.79 -39.33 -0.42 -1.68 16 18 C 0.10 0.97 7.12 -82.06 -0.58 0.39 16 19 C 0.24 2.33 8.21 -156.24 -1.28 1.05 16 20 N -0.28 -2.84 12.54 32.08 0.40 -2.43 16 21 N -0.04 -0.35 13.46 60.35 0.81 0.46 16 22 N -0.22 -1.21 7.90 60.35 0.48 -0.74 16 23 H 0.48 0.21 8.96 -340.34 -3.05 -2.84 16 24 N -0.28 -2.19 12.39 32.10 0.40 -1.79 16 25 N -0.51 -4.87 6.03 -5.81 -0.04 -4.90 16 26 H 0.43 3.32 8.17 -40.82 -0.33 2.99 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 29 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.39 4.09 7.58 -40.82 -0.31 3.78 16 35 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -35.22 323.04 -7.90 -43.12 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.58 Total: -1.40 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -4.09 Total: -8.38 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 2.49 Total: -46.04 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.22 -7.90 -43.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826381791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.728 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds