Wall clock time and date at job start Tue Mar 31 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99557 * 2 1 4 4 C 1.53002 * 109.46747 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47212 * 65.00221 * 4 3 2 6 6 C 1.36929 * 119.99907 * 88.76693 * 5 4 3 7 7 H 1.07992 * 119.99628 * 218.43617 * 6 5 4 8 8 C 1.39007 * 119.99657 * 38.16661 * 6 5 4 9 9 N 1.31395 * 119.99655 * 204.30313 * 8 6 5 10 10 Si 1.86799 * 120.00297 * 24.30374 * 8 6 5 11 11 H 1.48492 * 109.47005 * 4.81057 * 10 8 6 12 12 H 1.48499 * 109.47104 * 124.80989 * 10 8 6 13 13 H 1.48492 * 109.46997 * 244.80844 * 10 8 6 14 14 C 1.34773 * 119.99558 * 268.77407 * 5 4 3 15 15 O 1.21621 * 120.00141 * 3.67820 * 14 5 4 16 16 C 1.47480 * 119.99653 * 183.68059 * 14 5 4 17 17 C 1.41562 * 120.57687 * 22.49945 * 16 14 5 18 18 N 1.30893 * 120.16175 * 180.02562 * 17 16 14 19 19 C 1.34256 * 121.29302 * 359.97438 * 18 17 16 20 20 N 1.32430 * 131.62599 * 180.02562 * 19 18 17 21 21 C 1.33701 * 109.32572 * 180.02562 * 20 19 18 22 22 C 1.34910 * 108.65539 * 359.97438 * 21 20 19 23 23 N 1.37013 * 107.05515 * 0.02562 * 22 21 20 24 24 C 1.35974 * 132.54488 * 180.30450 * 23 22 21 25 25 H 1.09005 * 109.47146 * 299.99562 * 1 2 3 26 26 H 1.08998 * 109.47371 * 60.00187 * 1 2 3 27 27 H 1.09006 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47380 * 60.00456 * 3 2 1 29 29 H 1.08994 * 109.47390 * 299.99698 * 3 2 1 30 30 H 1.08994 * 109.47683 * 305.00086 * 4 3 2 31 31 H 1.09004 * 109.47357 * 184.99972 * 4 3 2 32 32 H 0.96995 * 119.99823 * 180.02562 * 9 8 6 33 33 H 1.07995 * 119.91578 * 0.02562 * 17 16 14 34 34 H 1.08000 * 125.67104 * 179.97438 * 21 20 19 35 35 H 1.07997 * 126.46969 * 180.02562 * 22 21 20 36 36 H 1.08003 * 120.58377 * 359.92594 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 4.2436 1.3434 -2.3447 7 1 3.9676 1.0019 -3.3313 8 6 4.8649 2.5765 -2.1844 9 7 4.7057 3.5149 -3.0902 10 14 5.9259 2.8996 -0.6814 11 1 6.0388 1.6555 0.1215 12 1 7.2784 3.3337 -1.1143 13 1 5.3041 3.9663 0.1435 14 6 4.1196 -0.7740 -1.3257 15 8 3.8186 -1.4718 -0.3761 16 6 4.6412 -1.3921 -2.5590 17 6 5.4223 -0.6382 -3.4676 18 7 5.8807 -1.1948 -4.5600 19 6 5.6265 -2.4815 -4.8466 20 7 5.9799 -3.2407 -5.8726 21 6 5.4788 -4.4692 -5.7073 22 6 4.7881 -4.5013 -4.5489 23 7 4.8736 -3.2509 -3.9953 24 6 4.3797 -2.7187 -2.8456 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.8508 0.5686 0.8426 31 1 3.9784 2.1766 0.0902 32 1 5.1394 4.3753 -2.9786 33 1 5.6406 0.3986 -3.2588 34 1 5.6059 -5.2980 -6.3880 35 1 4.2663 -5.3519 -4.1360 36 1 3.7904 -3.3210 -2.1700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868824914.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:55 Heat of formation + Delta-G solvation = 40.735430 kcal Electronic energy + Delta-G solvation = -23387.835191 eV Core-core repulsion = 19874.790875 eV Total energy + Delta-G solvation = -3513.044316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.96176 -41.05856 -38.97629 -38.32646 -36.95373 -35.51386 -34.10174 -32.58880 -30.68639 -30.14276 -27.26791 -27.13084 -25.90530 -24.78900 -23.77037 -22.76366 -21.30380 -19.62145 -19.51291 -18.61623 -17.71160 -17.33703 -17.21979 -17.06024 -16.64880 -16.33209 -15.99436 -15.64324 -15.30993 -15.06508 -14.79568 -14.61364 -14.44523 -13.88590 -13.76964 -13.41236 -13.32829 -12.87092 -12.77028 -12.65687 -12.22727 -11.96355 -11.75371 -11.65787 -11.24836 -10.87781 -10.58471 -10.45358 -10.12380 -9.77246 -9.13775 -8.57872 -6.17334 -0.60407 -0.10103 1.24495 1.31291 1.39909 1.49089 1.63343 2.11503 2.16399 2.43369 2.57678 2.67995 2.94748 3.01039 3.41647 3.48703 3.87968 3.98128 4.20394 4.25156 4.32983 4.38487 4.40920 4.50245 4.55226 4.57777 4.61001 4.84105 4.87147 4.91666 5.20300 5.33919 5.51330 5.62120 5.97225 6.17076 6.36405 6.53402 6.84922 6.96065 7.28905 7.69602 8.53074 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.006481 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.889353 B = 4319.412717 C = 5565.245235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.054 3.946 4 C 0.110 3.890 5 N -0.452 5.452 6 C -0.358 4.358 7 H 0.085 0.915 8 C 0.044 3.956 9 N -0.870 5.870 10 Si 0.913 3.087 11 H -0.254 1.254 12 H -0.281 1.281 13 H -0.255 1.255 14 C 0.536 3.464 15 O -0.587 6.587 16 C -0.200 4.200 17 C 0.202 3.798 18 N -0.489 5.489 19 C 0.348 3.652 20 N -0.519 5.519 21 C 0.035 3.965 22 C -0.089 4.089 23 N -0.402 5.402 24 C 0.165 3.835 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.286 0.714 33 H 0.213 0.787 34 H 0.227 0.773 35 H 0.233 0.767 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 -8.706 4.787 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.023 4.023 4 C -0.013 4.013 5 N -0.172 5.172 6 C -0.485 4.485 7 H 0.102 0.898 8 C -0.164 4.164 9 N -0.503 5.503 10 Si 0.736 3.264 11 H -0.178 1.178 12 H -0.208 1.208 13 H -0.180 1.180 14 C 0.325 3.675 15 O -0.472 6.472 16 C -0.208 4.208 17 C 0.017 3.983 18 N -0.202 5.202 19 C 0.000 4.000 20 N -0.243 5.243 21 C -0.114 4.114 22 C -0.218 4.218 23 N -0.079 5.079 24 C 0.030 3.970 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.229 0.771 34 H 0.243 0.757 35 H 0.249 0.751 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.815 -8.477 3.752 10.025 hybrid contribution -0.629 0.377 1.313 1.504 sum -4.444 -8.100 5.065 10.536 Atomic orbital electron populations 1.22856 0.80463 1.03205 1.00370 1.88047 1.20570 1.27673 1.95434 1.22857 0.93373 0.85152 1.00931 1.21740 0.93738 0.97834 0.87957 1.43415 1.57837 1.04549 1.11378 1.18928 1.41173 1.00789 0.87598 0.89781 1.25846 0.96490 0.94430 0.99681 1.69844 1.38841 1.04325 1.37334 0.86245 0.79627 0.79878 0.80646 1.17794 1.20800 1.17999 1.17497 0.80969 0.82910 0.86120 1.90668 1.55334 1.62245 1.38968 1.20737 1.05972 0.94153 0.99962 1.25226 0.86740 1.01513 0.84859 1.68042 1.24738 1.06106 1.21348 1.22528 0.96945 0.90268 0.90216 1.70647 1.27449 1.04624 1.21555 1.23357 0.96335 0.94596 0.97147 1.23519 1.12027 0.87330 0.98964 1.44141 1.34703 1.13065 1.16040 1.22765 0.93982 0.93940 0.86272 0.92579 0.94486 0.89091 0.90307 0.93635 0.89955 0.90408 0.90364 0.77099 0.75658 0.75060 0.77411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -14.43 9.48 -140.36 -1.33 -15.76 16 3 C 0.05 1.87 6.28 71.98 0.45 2.32 16 4 C 0.11 4.25 4.41 86.38 0.38 4.63 16 5 N -0.45 -19.71 2.13 -639.18 -1.36 -21.07 16 6 C -0.36 -16.79 6.41 84.08 0.54 -16.25 16 7 H 0.08 4.36 6.33 -2.91 -0.02 4.34 16 8 C 0.04 2.07 5.16 84.94 0.44 2.51 16 9 N -0.87 -43.57 13.96 21.67 0.30 -43.27 16 10 Si 0.91 36.27 25.14 68.60 1.72 37.99 16 11 H -0.25 -10.05 6.60 99.48 0.66 -9.40 16 12 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 13 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 14 C 0.54 23.20 7.18 86.68 0.62 23.82 16 15 O -0.59 -26.49 15.33 4.52 0.07 -26.42 16 16 C -0.20 -8.02 5.64 -20.03 -0.11 -8.14 16 17 C 0.20 8.70 9.08 85.65 0.78 9.48 16 18 N -0.49 -21.93 10.45 -196.19 -2.05 -23.98 16 19 C 0.35 14.27 8.91 261.29 2.33 16.60 16 20 N -0.52 -19.78 11.31 -199.52 -2.26 -22.04 16 21 C 0.04 0.93 11.82 83.64 0.99 1.92 16 22 C -0.09 -2.15 11.77 83.12 0.98 -1.17 16 23 N -0.40 -13.39 2.94 -355.58 -1.04 -14.44 16 24 C 0.17 5.54 10.65 84.05 0.90 6.43 16 25 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 3.17 7.44 -2.39 -0.02 3.16 16 31 H 0.08 2.90 3.74 -2.38 -0.01 2.89 16 32 H 0.29 13.27 8.31 -92.71 -0.77 12.50 16 33 H 0.21 9.68 4.83 -2.91 -0.01 9.66 16 34 H 0.23 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.23 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.21 5.65 7.84 -2.91 -0.02 5.62 16 Total: -1.00 -65.55 305.16 4.67 -60.88 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 1.07 Total: 23.99 kcal Atomic # 6 Polarization: 34.58 SS G_CDS: 9.54 Total: 44.11 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -6.41 Total: -124.80 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.26 Total: -42.18 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 1.72 Total: 37.99 kcal Total: -65.55 4.67 -60.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868824914.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.614 kcal (2) G-P(sol) polarization free energy of solvation -65.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds