Wall clock time and date at job start Tue Mar 31 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00352 * 2 1 4 4 H 1.48497 * 109.47000 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47556 * 120.00020 * 3 2 1 6 6 H 1.48500 * 109.47393 * 240.00237 * 3 2 1 7 7 C 1.37880 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00081 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47335 * 300.00192 * 9 7 2 11 11 O 1.42903 * 109.47089 * 60.00431 * 9 7 2 12 12 C 1.52998 * 109.47458 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47357 * 180.27341 * 12 9 7 14 14 C 1.46902 * 111.00028 * 294.31307 * 13 12 9 15 15 C 1.50251 * 109.98253 * 186.33451 * 14 13 12 16 16 O 1.21278 * 118.62961 * 197.19835 * 15 14 13 17 17 N 1.33726 * 122.74895 * 17.18429 * 15 14 13 18 18 C 1.46004 * 122.92514 * 358.32915 * 17 15 14 19 19 C 1.47193 * 110.99828 * 171.42596 * 13 12 9 20 20 H 1.08994 * 109.59486 * 72.59189 * 19 13 12 21 21 C 1.50699 * 109.59339 * 312.13577 * 19 13 12 22 22 C 1.38241 * 119.99912 * 319.72702 * 21 19 13 23 23 C 1.38237 * 119.99848 * 179.76807 * 22 21 19 24 24 C 1.38232 * 119.99784 * 0.48287 * 23 22 21 25 25 C 1.38243 * 120.00238 * 359.79593 * 24 23 22 26 26 C 1.38227 * 119.99658 * 359.95321 * 25 24 23 27 27 H 0.96998 * 120.00424 * 179.97438 * 1 2 3 28 28 H 0.96702 * 114.00331 * 59.99420 * 11 9 7 29 29 H 1.09003 * 109.47106 * 300.27754 * 12 9 7 30 30 H 1.09002 * 109.46773 * 60.26850 * 12 9 7 31 31 H 1.09004 * 109.38895 * 306.49240 * 14 13 12 32 32 H 1.09000 * 109.38652 * 66.28245 * 14 13 12 33 33 H 0.96996 * 118.53669 * 178.36045 * 17 15 14 34 34 H 1.09002 * 109.37610 * 138.33891 * 18 17 15 35 35 H 1.08996 * 109.37764 * 257.98813 * 18 17 15 36 36 H 1.07997 * 119.99918 * 0.02562 * 22 21 19 37 37 H 1.08000 * 120.00035 * 180.25455 * 23 22 21 38 38 H 1.08000 * 120.00260 * 179.77075 * 24 23 22 39 39 H 1.07996 * 120.00283 * 179.97438 * 25 24 23 40 40 H 1.08003 * 119.99900 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4290 -2.5746 -1.1671 12 6 2.2451 -3.6622 -0.0018 13 7 1.5105 -4.9343 -0.0084 14 6 0.7547 -5.1123 1.2386 15 6 0.1388 -6.4823 1.2746 16 8 -0.7628 -6.6936 2.0577 17 7 0.5430 -7.4783 0.4791 18 6 1.5943 -7.3181 -0.5214 19 6 2.4241 -6.0698 -0.2147 20 1 3.0125 -6.2343 0.6879 21 6 3.3419 -5.7760 -1.3734 22 6 2.8494 -5.1517 -2.5042 23 6 3.6923 -4.8779 -3.5651 24 6 5.0255 -5.2373 -3.4991 25 6 5.5167 -5.8667 -2.3706 26 6 4.6749 -6.1358 -1.3077 27 1 -0.4851 -0.8400 -0.0004 28 1 0.9208 -2.5291 -1.9984 29 1 2.8743 -3.6013 -0.8898 30 1 2.8692 -3.6075 0.8901 31 1 1.4267 -4.9952 2.0889 32 1 -0.0334 -4.3614 1.2943 33 1 0.1186 -8.3456 0.5705 34 1 2.2418 -8.1948 -0.5091 35 1 1.1423 -7.2184 -1.5082 36 1 1.8070 -4.8743 -2.5571 37 1 3.3085 -4.3865 -4.4469 38 1 5.6833 -5.0267 -4.3294 39 1 6.5582 -6.1479 -2.3192 40 1 5.0588 -6.6272 -0.4259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933324708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:28 Heat of formation + Delta-G solvation = -51.638761 kcal Electronic energy + Delta-G solvation = -23864.673682 eV Core-core repulsion = 20451.164064 eV Total energy + Delta-G solvation = -3413.509618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60271 -39.12516 -37.27302 -35.91969 -34.13923 -32.09986 -32.06096 -30.87400 -28.90467 -28.28644 -26.09048 -24.14925 -23.12353 -22.53244 -21.22629 -20.69999 -19.00204 -17.59410 -17.18634 -16.66569 -16.60099 -15.65110 -15.22675 -15.09861 -14.69472 -14.27788 -14.14928 -13.91142 -13.75344 -13.43105 -13.32046 -13.12500 -12.81263 -12.54964 -12.36365 -12.08247 -11.71208 -11.56071 -11.10994 -10.96200 -10.84411 -10.73192 -10.12645 -10.06509 -9.77833 -9.29046 -9.11682 -8.84903 -8.64958 -8.47365 -8.17833 -7.98211 -6.35907 -4.20181 1.32278 1.45488 2.71582 3.28766 3.41097 3.41939 3.61520 3.77120 3.93629 4.46540 4.52287 4.77432 4.84683 4.90726 5.03751 5.12322 5.18624 5.30047 5.35263 5.44710 5.54112 5.63174 5.68364 5.80631 5.94689 5.97065 6.04904 6.09906 6.22585 6.45799 6.56264 6.59956 6.62167 6.74952 7.00932 7.08349 7.21154 7.29616 7.48618 7.98706 8.26408 8.33570 8.84903 9.16731 9.65829 11.04202 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.006515 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.038193 B = 4296.685353 C = 6087.368042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.036 3.964 3 Si 1.065 2.935 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.652 4.652 8 H 0.047 0.953 9 C 0.221 3.779 10 H 0.047 0.953 11 O -0.569 6.569 12 C 0.030 3.970 13 N -0.512 5.512 14 C 0.039 3.961 15 C 0.529 3.471 16 O -0.557 6.557 17 N -0.720 5.720 18 C 0.128 3.872 19 C 0.101 3.899 20 H 0.054 0.946 21 C -0.079 4.079 22 C -0.084 4.084 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.114 4.114 27 H 0.285 0.715 28 H 0.350 0.650 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.397 0.603 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 -14.833 -5.309 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.173 4.173 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.690 4.690 8 H 0.066 0.934 9 C 0.164 3.836 10 H 0.064 0.936 11 O -0.373 6.373 12 C -0.096 4.096 13 N -0.238 5.238 14 C -0.091 4.091 15 C 0.316 3.684 16 O -0.435 6.435 17 N -0.373 5.373 18 C 0.003 3.997 19 C -0.008 4.008 20 H 0.072 0.928 21 C -0.080 4.080 22 C -0.102 4.102 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.132 4.132 27 H 0.097 0.903 28 H 0.194 0.806 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.233 0.767 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.463 -13.129 -4.833 16.351 hybrid contribution 1.416 -1.925 0.322 2.411 sum 9.879 -15.054 -4.510 18.562 Atomic orbital electron populations 1.70630 1.06892 1.32376 1.42529 1.25734 0.96473 1.02335 0.92739 0.83626 0.74977 0.75610 0.76476 1.20717 1.21529 1.21437 1.22382 0.94283 0.92489 1.59839 0.93424 1.19475 0.88157 0.90189 0.85806 0.93569 1.86488 1.38639 1.96467 1.15683 1.23191 0.97317 0.88190 1.00950 1.62692 1.25577 1.02165 1.33334 1.22301 1.00024 0.94432 0.92350 1.20297 0.82258 0.86614 0.79192 1.90743 1.30281 1.83057 1.39384 1.45523 1.39823 1.13802 1.38119 1.21483 0.88958 0.96998 0.92275 1.20876 0.92179 0.91901 0.95819 0.92832 1.19469 0.93475 0.99999 0.95033 1.21211 1.01050 0.96005 0.91931 1.21217 0.93776 0.99999 0.98987 1.21162 0.95754 0.98708 0.98044 1.21026 0.99392 1.00035 0.93912 1.20968 0.92964 1.00557 0.98750 0.90301 0.80551 0.89898 0.95173 0.91386 0.85963 0.76708 0.90508 0.90620 0.84499 0.85909 0.86362 0.86333 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.53 55.43 0.75 -26.07 16 2 C 0.04 1.02 5.40 -17.82 -0.10 0.93 16 3 Si 1.06 24.68 29.90 -169.99 -5.08 19.60 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.65 -17.57 8.76 -34.44 -0.30 -17.87 16 8 H 0.05 1.28 7.74 -52.49 -0.41 0.87 16 9 C 0.22 5.30 2.28 -27.88 -0.06 5.23 16 10 H 0.05 1.22 6.56 -51.93 -0.34 0.88 16 11 O -0.57 -13.71 11.87 -35.23 -0.42 -14.13 16 12 C 0.03 0.58 4.04 -3.83 -0.02 0.56 16 13 N -0.51 -8.35 3.91 -229.51 -0.90 -9.25 16 14 C 0.04 0.67 5.16 -5.19 -0.03 0.65 16 15 C 0.53 8.73 7.81 -11.67 -0.09 8.64 16 16 O -0.56 -11.06 17.82 5.56 0.10 -10.96 16 17 N -0.72 -9.08 5.52 -61.06 -0.34 -9.42 16 18 C 0.13 1.39 6.68 -4.31 -0.03 1.36 16 19 C 0.10 1.31 2.20 -68.70 -0.15 1.16 16 20 H 0.05 0.69 7.95 -51.93 -0.41 0.27 16 21 C -0.08 -0.99 3.66 -104.62 -0.38 -1.38 16 22 C -0.08 -1.10 7.43 -39.58 -0.29 -1.40 16 23 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 25 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 26 C -0.11 -1.28 9.67 -39.59 -0.38 -1.66 16 27 H 0.29 8.75 6.47 -40.82 -0.26 8.49 16 28 H 0.35 7.64 9.04 45.56 0.41 8.05 16 29 H 0.08 1.58 5.23 -51.93 -0.27 1.31 16 30 H 0.03 0.59 8.06 -51.93 -0.42 0.18 16 31 H 0.07 1.10 8.05 -51.93 -0.42 0.69 16 32 H 0.12 2.39 6.77 -51.93 -0.35 2.03 16 33 H 0.40 4.26 8.84 -40.82 -0.36 3.90 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 36 H 0.14 1.97 7.73 -52.49 -0.41 1.56 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.11 8.04 -52.48 -0.42 0.69 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -32.39 327.95 -8.54 -40.93 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -4.56 Total: 13.38 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.03 Total: -9.02 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.49 Total: -44.74 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.32 Total: -25.09 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.39 -8.54 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933324708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.707 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds