Wall clock time and date at job start Tue Mar 31 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00352 * 2 1 4 4 H 1.48497 * 109.47000 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47556 * 120.00020 * 3 2 1 6 6 H 1.48500 * 109.47393 * 240.00237 * 3 2 1 7 7 C 1.37880 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00081 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47335 * 300.00192 * 9 7 2 11 11 O 1.42903 * 109.47089 * 60.00431 * 9 7 2 12 12 C 1.52998 * 109.47458 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47357 * 180.27341 * 12 9 7 14 14 C 1.46902 * 111.00028 * 294.31307 * 13 12 9 15 15 C 1.50251 * 109.98253 * 186.33451 * 14 13 12 16 16 O 1.21278 * 118.62961 * 197.19835 * 15 14 13 17 17 N 1.33726 * 122.74895 * 17.18429 * 15 14 13 18 18 C 1.46004 * 122.92514 * 358.32915 * 17 15 14 19 19 C 1.47193 * 110.99828 * 171.42596 * 13 12 9 20 20 H 1.08994 * 109.59486 * 72.59189 * 19 13 12 21 21 C 1.50699 * 109.59339 * 312.13577 * 19 13 12 22 22 C 1.38241 * 119.99912 * 319.72702 * 21 19 13 23 23 C 1.38237 * 119.99848 * 179.76807 * 22 21 19 24 24 C 1.38232 * 119.99784 * 0.48287 * 23 22 21 25 25 C 1.38243 * 120.00238 * 359.79593 * 24 23 22 26 26 C 1.38227 * 119.99658 * 359.95321 * 25 24 23 27 27 H 0.96998 * 120.00424 * 179.97438 * 1 2 3 28 28 H 0.96702 * 114.00331 * 59.99420 * 11 9 7 29 29 H 1.09003 * 109.47106 * 300.27754 * 12 9 7 30 30 H 1.09002 * 109.46773 * 60.26850 * 12 9 7 31 31 H 1.09004 * 109.38895 * 306.49240 * 14 13 12 32 32 H 1.09000 * 109.38652 * 66.28245 * 14 13 12 33 33 H 0.96996 * 118.53669 * 178.36045 * 17 15 14 34 34 H 1.09002 * 109.37610 * 138.33891 * 18 17 15 35 35 H 1.08996 * 109.37764 * 257.98813 * 18 17 15 36 36 H 1.07997 * 119.99918 * 0.02562 * 22 21 19 37 37 H 1.08000 * 120.00035 * 180.25455 * 23 22 21 38 38 H 1.08000 * 120.00260 * 179.77075 * 24 23 22 39 39 H 1.07996 * 120.00283 * 179.97438 * 25 24 23 40 40 H 1.08003 * 119.99900 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4290 -2.5746 -1.1671 12 6 2.2451 -3.6622 -0.0018 13 7 1.5105 -4.9343 -0.0084 14 6 0.7547 -5.1123 1.2386 15 6 0.1388 -6.4823 1.2746 16 8 -0.7628 -6.6936 2.0577 17 7 0.5430 -7.4783 0.4791 18 6 1.5943 -7.3181 -0.5214 19 6 2.4241 -6.0698 -0.2147 20 1 3.0125 -6.2343 0.6879 21 6 3.3419 -5.7760 -1.3734 22 6 2.8494 -5.1517 -2.5042 23 6 3.6923 -4.8779 -3.5651 24 6 5.0255 -5.2373 -3.4991 25 6 5.5167 -5.8667 -2.3706 26 6 4.6749 -6.1358 -1.3077 27 1 -0.4851 -0.8400 -0.0004 28 1 0.9208 -2.5291 -1.9984 29 1 2.8743 -3.6013 -0.8898 30 1 2.8692 -3.6075 0.8901 31 1 1.4267 -4.9952 2.0889 32 1 -0.0334 -4.3614 1.2943 33 1 0.1186 -8.3456 0.5705 34 1 2.2418 -8.1948 -0.5091 35 1 1.1423 -7.2184 -1.5082 36 1 1.8070 -4.8743 -2.5571 37 1 3.3085 -4.3865 -4.4469 38 1 5.6833 -5.0267 -4.3294 39 1 6.5582 -6.1479 -2.3192 40 1 5.0588 -6.6272 -0.4259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933324708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:27 Heat of formation + Delta-G solvation = -76.804797 kcal Electronic energy + Delta-G solvation = -23865.764963 eV Core-core repulsion = 20451.164064 eV Total energy + Delta-G solvation = -3414.600899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80559 -40.20297 -38.70124 -37.51774 -35.50700 -34.21166 -33.14287 -31.74426 -30.57455 -29.34466 -27.71612 -25.64297 -24.51433 -23.43178 -22.58211 -22.15987 -20.13618 -19.40923 -18.53135 -17.95207 -17.65439 -17.03780 -16.60506 -16.26181 -15.93476 -15.80278 -15.65161 -15.41534 -15.09602 -14.81455 -14.51315 -14.19909 -14.06994 -13.98094 -13.83735 -13.56008 -13.01272 -12.77251 -12.70602 -12.52849 -12.05421 -11.93827 -11.84619 -11.81105 -11.22203 -11.09135 -10.61458 -10.22816 -10.06776 -9.72848 -9.56665 -9.46526 -8.59019 -6.44162 0.43855 0.58086 1.38171 1.53445 1.60710 1.80048 2.16543 2.52036 2.65791 2.93242 3.19690 3.32173 3.72334 3.78944 3.94661 4.04530 4.09728 4.20823 4.24174 4.25644 4.38863 4.46269 4.47194 4.52564 4.69648 4.74863 4.90512 4.91355 5.11172 5.24610 5.39504 5.56163 5.61756 5.68619 5.72763 5.74044 5.91832 6.00719 6.08394 6.17286 6.17925 6.58183 7.03781 7.26008 7.53480 8.78587 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.006515 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.038193 B = 4296.685353 C = 6087.368042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.016 4.016 3 Si 1.112 2.888 4 H -0.288 1.288 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.657 4.657 8 H 0.050 0.950 9 C 0.221 3.779 10 H 0.014 0.986 11 O -0.579 6.579 12 C 0.054 3.946 13 N -0.515 5.515 14 C 0.041 3.959 15 C 0.531 3.469 16 O -0.597 6.597 17 N -0.702 5.702 18 C 0.129 3.871 19 C 0.101 3.899 20 H 0.063 0.937 21 C -0.089 4.089 22 C -0.102 4.102 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.115 4.115 27 H 0.267 0.733 28 H 0.359 0.641 29 H 0.089 0.911 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.411 0.589 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.861 -16.206 -6.271 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.218 4.218 3 Si 0.934 3.066 4 H -0.213 1.213 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.695 4.695 8 H 0.068 0.932 9 C 0.164 3.836 10 H 0.032 0.968 11 O -0.383 6.383 12 C -0.073 4.073 13 N -0.241 5.241 14 C -0.089 4.089 15 C 0.318 3.682 16 O -0.478 6.478 17 N -0.353 5.353 18 C 0.005 3.995 19 C -0.007 4.007 20 H 0.081 0.919 21 C -0.090 4.090 22 C -0.120 4.120 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.133 4.133 27 H 0.078 0.922 28 H 0.205 0.795 29 H 0.107 0.893 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.249 0.751 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.486 -14.560 -5.831 19.440 hybrid contribution 0.548 -1.577 0.547 1.757 sum 12.035 -16.136 -5.285 20.812 Atomic orbital electron populations 1.70774 1.08090 1.31245 1.45596 1.27218 0.96430 1.06353 0.91793 0.83015 0.74158 0.71472 0.77947 1.21339 1.19715 1.19215 1.22785 0.94573 0.93801 1.58344 0.93170 1.19316 0.88194 0.91487 0.84635 0.96837 1.86443 1.39135 1.96573 1.16171 1.22710 0.95681 0.88054 1.00871 1.62554 1.26373 1.02353 1.32782 1.22133 0.99382 0.94351 0.93083 1.20077 0.81822 0.86836 0.79454 1.90724 1.32076 1.83622 1.41400 1.45402 1.39544 1.13387 1.36966 1.21698 0.88718 0.97615 0.91464 1.21015 0.92135 0.90965 0.96633 0.91868 1.19439 0.94154 1.00946 0.94470 1.21119 1.00391 0.97419 0.93084 1.21394 0.94459 1.00281 0.98980 1.21482 0.95432 0.97963 0.98984 1.21395 1.00635 0.98991 0.93278 1.21225 0.92200 1.00168 0.99755 0.92224 0.79548 0.89263 0.95739 0.90770 0.89422 0.75123 0.86261 0.90392 0.86606 0.85220 0.84139 0.83669 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.19 13.53 21.45 0.29 -56.90 16 2 C -0.02 -0.89 5.40 84.66 0.46 -0.43 16 3 Si 1.11 49.42 29.90 68.60 2.05 51.47 16 4 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.66 -35.83 8.76 25.60 0.22 -35.61 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 9 C 0.22 10.97 2.28 29.85 0.07 11.04 16 10 H 0.01 0.77 6.56 -2.39 -0.02 0.76 16 11 O -0.58 -28.96 11.87 -148.98 -1.77 -30.73 16 12 C 0.05 2.10 4.04 86.30 0.35 2.45 16 13 N -0.51 -16.84 3.91 -880.04 -3.44 -20.28 16 14 C 0.04 1.46 5.16 85.42 0.44 1.90 16 15 C 0.53 17.54 7.81 87.68 0.69 18.23 16 16 O -0.60 -24.18 17.82 -3.02 -0.05 -24.23 16 17 N -0.70 -16.46 5.52 -466.07 -2.57 -19.03 16 18 C 0.13 2.44 6.68 86.47 0.58 3.02 16 19 C 0.10 2.42 2.20 44.11 0.10 2.51 16 20 H 0.06 1.44 7.95 -2.39 -0.02 1.42 16 21 C -0.09 -2.05 3.66 -19.87 -0.07 -2.12 16 22 C -0.10 -2.57 7.43 22.27 0.17 -2.40 16 23 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 24 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 26 C -0.12 -2.18 9.67 22.27 0.22 -1.96 16 27 H 0.27 17.20 6.47 -92.71 -0.60 16.60 16 28 H 0.36 16.16 9.04 -74.06 -0.67 15.49 16 29 H 0.09 3.36 5.23 -2.39 -0.01 3.35 16 30 H 0.02 0.96 8.06 -2.39 -0.02 0.95 16 31 H 0.07 2.47 8.05 -2.39 -0.02 2.45 16 32 H 0.09 3.70 6.77 -2.39 -0.02 3.69 16 33 H 0.41 7.89 8.84 -92.71 -0.82 7.07 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.53 8.02 -2.39 -0.02 1.52 16 36 H 0.12 3.37 7.73 -2.91 -0.02 3.34 16 37 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.14 2.01 8.04 -2.91 -0.02 1.99 16 Total: -1.00 -72.16 327.95 -1.87 -74.03 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.25 Total: 35.74 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 3.88 Total: -10.07 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -5.73 Total: -96.21 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -1.82 Total: -54.96 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.47 kcal Total: -72.16 -1.87 -74.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933324708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.778 kcal (2) G-P(sol) polarization free energy of solvation -72.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds