Wall clock time and date at job start Tue Mar 31 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 108.57830 * 2 1 4 4 O 1.42104 * 108.57880 * 131.02447 * 2 1 3 5 5 C 1.81399 * 101.92308 * 245.51137 * 2 1 3 6 6 C 1.50697 * 109.47258 * 180.02562 * 5 2 1 7 7 O 1.21280 * 120.00043 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00087 * 179.97438 * 6 5 2 9 9 C 1.46930 * 120.63176 * 359.72234 * 8 6 5 10 10 C 1.53617 * 108.54399 * 126.36581 * 9 8 6 11 11 C 1.53041 * 109.24156 * 54.85826 * 10 9 8 12 12 C 1.53035 * 109.53968 * 298.50833 * 11 10 9 13 13 H 1.09003 * 109.49859 * 301.41741 * 12 11 10 14 14 N 1.46500 * 109.50011 * 181.31760 * 12 11 10 15 15 C 1.36934 * 120.00107 * 85.16199 * 14 12 11 16 16 H 1.08002 * 119.99794 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00019 * 180.02562 * 15 14 12 18 18 N 1.31623 * 119.99980 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00135 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47294 * 59.99503 * 19 17 15 21 21 H 1.48496 * 109.47366 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46725 * 299.99960 * 19 17 15 23 23 C 1.46930 * 120.63305 * 180.02562 * 8 6 5 24 24 H 1.09002 * 109.47124 * 54.48738 * 1 2 3 25 25 H 1.09001 * 109.46975 * 294.48859 * 1 2 3 26 26 H 1.09004 * 109.47147 * 174.48822 * 1 2 3 27 27 H 1.09003 * 109.46876 * 300.00595 * 5 2 1 28 28 H 1.08997 * 109.47058 * 59.99801 * 5 2 1 29 29 H 1.08999 * 109.58652 * 246.20427 * 9 8 6 30 30 H 1.09004 * 109.58257 * 6.62705 * 9 8 6 31 31 H 1.09001 * 109.63783 * 294.86750 * 10 9 8 32 32 H 1.09004 * 109.45841 * 174.74326 * 10 9 8 33 33 H 1.09002 * 109.46097 * 178.48535 * 11 10 9 34 34 H 1.09004 * 109.44973 * 58.52477 * 11 10 9 35 35 H 0.97005 * 119.99657 * 265.16492 * 14 12 11 36 36 H 0.97001 * 119.99793 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.58038 * 353.37327 * 23 8 6 38 38 H 1.08995 * 109.58432 * 113.65798 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 1.0162 5 6 2.1888 -0.7357 -1.6152 6 6 3.6827 -0.8183 -1.7951 7 8 4.4219 -0.4206 -0.9197 8 7 4.1974 -1.3352 -2.9284 9 6 3.3149 -1.8278 -3.9948 10 6 3.7070 -1.1389 -5.3106 11 6 5.1975 -1.3656 -5.5739 12 6 6.0177 -0.7432 -4.4418 13 1 5.7980 0.3225 -4.3767 14 7 7.4453 -0.9332 -4.7106 15 6 8.1168 -0.0428 -5.5051 16 1 7.5942 0.7997 -5.9333 17 6 9.4693 -0.2232 -5.7602 18 7 10.1064 -1.2498 -5.2379 19 14 10.3857 0.9918 -6.8435 20 1 10.3119 2.3466 -6.2400 21 1 11.8073 0.5783 -6.9584 22 1 9.7663 1.0167 -8.1929 23 6 5.6517 -1.4230 -3.1181 24 1 -0.3633 0.5970 -0.8365 25 1 -0.3633 0.4260 0.9352 26 1 -0.3634 -1.0230 -0.0987 27 1 1.7610 -1.7370 -1.6664 28 1 1.7611 -0.1172 -2.4042 29 1 3.4305 -2.9069 -4.0955 30 1 2.2793 -1.5904 -3.7509 31 1 3.5091 -0.0695 -5.2374 32 1 3.1245 -1.5614 -6.1294 33 1 5.4738 -0.9010 -6.5205 34 1 5.3988 -2.4358 -5.6224 35 1 7.9147 -1.6898 -4.3257 36 1 11.0514 -1.3760 -5.4165 37 1 6.1586 -0.9184 -2.2956 38 1 5.9540 -2.4698 -3.1465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998650175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:28 Heat of formation + Delta-G solvation = -119.403883 kcal Electronic energy + Delta-G solvation = -21661.872218 eV Core-core repulsion = 18245.034941 eV Total energy + Delta-G solvation = -3416.837277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.35332 -38.85360 -37.95081 -36.93587 -36.28323 -34.01640 -32.79832 -31.86432 -30.28070 -29.54504 -26.38093 -25.69588 -23.42904 -21.87498 -20.49294 -19.64888 -19.20409 -18.63839 -17.69123 -17.31554 -17.01495 -16.70331 -16.27177 -16.19271 -15.59050 -15.36379 -15.18337 -14.74618 -14.37933 -14.22147 -13.91813 -13.82663 -13.64660 -13.50790 -13.02315 -12.98459 -12.96511 -12.85805 -12.39997 -12.28710 -12.19324 -11.99441 -11.86925 -11.77846 -11.70404 -11.53141 -11.20061 -10.92788 -9.79999 -9.06455 -7.98132 -5.28181 -0.99193 1.35102 1.44524 1.48399 1.54139 1.76303 1.89926 2.53874 2.84532 3.14943 3.34302 3.38342 3.78064 3.95011 4.01421 4.03326 4.11169 4.18371 4.24572 4.33213 4.34673 4.37519 4.58769 4.75066 4.80573 4.85912 5.04197 5.04600 5.14100 5.35995 5.39928 5.46722 5.57636 6.22257 6.24183 6.88149 7.29110 8.01718 8.25825 9.25035 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.003578 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.690450 B = 7822.860375 C = 8189.148282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 S 2.428 3.572 3 O -0.989 6.989 4 O -0.987 6.987 5 C -0.641 4.641 6 C 0.520 3.480 7 O -0.595 6.595 8 N -0.593 5.593 9 C 0.095 3.905 10 C -0.126 4.126 11 C -0.130 4.130 12 C 0.165 3.835 13 H 0.031 0.969 14 N -0.737 5.737 15 C -0.243 4.243 16 H 0.074 0.926 17 C -0.074 4.074 18 N -0.969 5.969 19 Si 0.975 3.025 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.273 1.273 23 C 0.113 3.887 24 H 0.165 0.835 25 H 0.139 0.861 26 H 0.167 0.833 27 H 0.212 0.788 28 H 0.208 0.792 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.373 0.627 36 H 0.252 0.748 37 H 0.058 0.942 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.349 -2.738 2.884 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.773 4.773 2 S 2.614 3.386 3 O -0.986 6.986 4 O -0.984 6.984 5 C -0.769 4.769 6 C 0.308 3.692 7 O -0.477 6.477 8 N -0.325 5.325 9 C -0.025 4.025 10 C -0.165 4.165 11 C -0.170 4.170 12 C 0.056 3.944 13 H 0.049 0.951 14 N -0.377 5.377 15 C -0.375 4.375 16 H 0.092 0.908 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.803 3.197 20 H -0.208 1.208 21 H -0.221 1.221 22 H -0.199 1.199 23 C -0.012 4.012 24 H 0.183 0.817 25 H 0.158 0.842 26 H 0.185 0.815 27 H 0.229 0.771 28 H 0.225 0.775 29 H 0.109 0.891 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.205 0.795 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.299 -2.095 3.858 28.637 hybrid contribution 1.293 0.101 -0.892 1.574 sum -27.006 -1.994 2.965 27.242 Atomic orbital electron populations 1.30053 1.18204 1.14979 1.14107 1.07399 0.80725 0.74042 0.76470 1.93529 1.81812 1.36867 1.86424 1.93522 1.81791 1.67843 1.55217 1.30813 0.98347 1.20084 1.27665 1.20248 0.90255 0.76821 0.81844 1.90858 1.62906 1.50679 1.43236 1.48085 1.06751 1.60017 1.17619 1.22436 0.95229 0.99805 0.85033 1.22007 0.94770 1.01555 0.98165 1.22092 0.95737 1.00633 0.98542 1.20670 0.84176 0.96729 0.92800 0.95121 1.42492 1.05374 1.30760 1.59076 1.19518 0.92144 1.04368 1.21437 0.90847 1.25582 0.97662 1.00361 1.03020 1.69813 1.09555 1.32159 1.50387 0.85202 0.77256 0.78308 0.78935 1.20807 1.22052 1.19870 1.21685 0.80650 1.00944 0.97890 0.81690 0.84240 0.81506 0.77051 0.77470 0.89134 0.84425 0.91653 0.87403 0.93590 0.92419 0.79495 0.93920 0.92362 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -0.85 10.62 113.37 1.20 0.35 16 2 S 2.43 42.33 4.60 -56.49 -0.26 42.07 16 3 O -0.99 -28.98 17.95 -125.77 -2.26 -31.24 16 4 O -0.99 -27.95 17.94 -125.73 -2.26 -30.21 16 5 C -0.64 -7.05 4.63 71.23 0.33 -6.72 16 6 C 0.52 14.57 7.72 87.66 0.68 15.25 16 7 O -0.59 -24.49 15.04 -0.16 0.00 -24.49 16 8 N -0.59 -15.71 2.97 -818.00 -2.43 -18.13 16 9 C 0.10 1.40 6.37 86.50 0.55 1.95 16 10 C -0.13 -2.37 6.10 30.82 0.19 -2.18 16 11 C -0.13 -4.09 5.46 30.62 0.17 -3.92 16 12 C 0.17 6.68 2.92 45.08 0.13 6.81 16 13 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 14 N -0.74 -38.23 5.12 -322.51 -1.65 -39.88 16 15 C -0.24 -13.82 9.93 84.03 0.83 -12.98 16 16 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 17 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 18 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 19 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.11 4.11 5.90 86.38 0.51 4.62 16 24 H 0.16 -0.77 8.14 -2.39 -0.02 -0.79 16 25 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.17 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.21 -0.03 7.93 -2.39 -0.02 -0.05 16 28 H 0.21 0.21 7.70 -2.39 -0.02 0.20 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.14 0.52 5.93 -2.39 -0.01 0.50 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.37 20.72 7.80 -92.70 -0.72 20.00 16 36 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.06 2.56 7.00 -2.39 -0.02 2.55 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -99.20 326.58 -1.14 -100.34 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.34 Total: 13.34 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.06 Total: -0.66 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -3.80 Total: -118.15 kcal Atomic # 8 Polarization: -81.42 SS G_CDS: -4.52 Total: -85.94 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 42.33 SS G_CDS: -0.26 Total: 42.07 kcal Total: -99.20 -1.14 -100.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998650175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.066 kcal (2) G-P(sol) polarization free energy of solvation -99.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds