Wall clock time and date at job start Tue Mar 31 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00294 * 2 1 4 4 H 1.48494 * 109.47135 * 264.98602 * 3 2 1 5 5 H 1.48502 * 109.47025 * 144.98156 * 3 2 1 6 6 H 1.48499 * 109.46825 * 24.98590 * 3 2 1 7 7 C 1.38818 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99489 * 162.72147 * 7 2 1 9 9 N 1.36936 * 120.00158 * 342.72671 * 7 2 1 10 10 C 1.47152 * 120.98007 * 334.11461 * 9 7 2 11 11 C 1.53299 * 108.38051 * 230.51292 * 10 9 7 12 12 O 1.42956 * 109.22277 * 307.69663 * 11 10 9 13 13 C 1.42961 * 114.16500 * 62.58810 * 12 11 10 14 14 H 1.09001 * 109.51512 * 57.33930 * 13 12 11 15 15 C 1.53001 * 109.51460 * 177.43950 * 13 12 11 16 16 N 1.46502 * 109.47253 * 300.00008 * 15 13 12 17 17 C 1.34774 * 120.00200 * 179.97438 * 16 15 13 18 18 O 1.21284 * 119.99990 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00266 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.54464 * 325.58688 * 19 17 16 21 21 C 1.52991 * 117.50018 * 179.91047 * 19 17 16 22 22 C 1.52998 * 117.49965 * 111.25105 * 19 17 16 23 23 F 1.39898 * 117.50025 * 214.98368 * 22 19 17 24 24 F 1.39900 * 117.49802 * 0.02562 * 22 19 17 25 25 C 1.47152 * 120.98190 * 153.83406 * 9 7 2 26 26 H 0.97005 * 119.99941 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.68365 * 350.23467 * 10 9 7 28 28 H 1.09000 * 109.67990 * 110.79550 * 10 9 7 29 29 H 1.08992 * 109.51318 * 67.62505 * 11 10 9 30 30 H 1.09006 * 109.50709 * 187.77665 * 11 10 9 31 31 H 1.09005 * 109.47156 * 59.99696 * 15 13 12 32 32 H 1.09002 * 109.47384 * 179.97438 * 15 13 12 33 33 H 0.96999 * 119.99990 * 359.97438 * 16 15 13 34 34 H 1.09001 * 117.50106 * 0.02562 * 21 19 17 35 35 H 1.09008 * 117.49796 * 144.99492 * 21 19 17 36 36 H 1.08997 * 109.68200 * 249.21170 * 25 9 7 37 37 H 1.09008 * 109.67954 * 9.76680 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6037 1.9851 -1.3947 5 1 3.4907 1.4730 0.8034 6 1 1.3987 2.6809 0.5914 7 6 2.0102 -1.2023 0.0005 8 1 3.0536 -1.2235 -0.2773 9 7 1.3717 -2.3612 0.3532 10 6 0.1995 -2.3399 1.2424 11 6 0.4285 -3.3545 2.3686 12 8 0.7705 -4.6204 1.7993 13 6 1.9866 -4.6146 1.0476 14 1 2.8054 -4.2759 1.6823 15 6 2.2823 -6.0285 0.5431 16 7 2.4190 -6.9359 1.6852 17 6 2.6822 -8.2417 1.4806 18 8 2.8053 -8.6659 0.3511 19 6 2.8234 -9.1750 2.6555 20 1 3.2735 -8.7416 3.5486 21 6 3.1200 -10.6460 2.3574 22 6 1.7334 -10.2301 2.8546 23 9 1.3911 -10.5651 4.1690 24 9 0.6822 -10.2549 1.9318 25 6 1.8340 -3.6642 -0.1508 26 1 -0.4850 0.8401 0.0004 27 1 0.0779 -1.3429 1.6657 28 1 -0.6934 -2.6118 0.6794 29 1 1.2416 -3.0112 3.0081 30 1 -0.4824 -3.4549 2.9588 31 1 1.4639 -6.3659 -0.0930 32 1 3.2093 -6.0233 -0.0302 33 1 2.3202 -6.5968 2.5886 34 1 3.2135 -10.9388 1.3116 35 1 3.7655 -11.1806 3.0545 36 1 1.1029 -4.0670 -0.8517 37 1 2.7953 -3.5444 -0.6505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035368713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:08 Heat of formation + Delta-G solvation = -143.645671 kcal Electronic energy + Delta-G solvation = -23240.721263 eV Core-core repulsion = 19268.992397 eV Total energy + Delta-G solvation = -3971.728867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.78041 -48.47265 -41.06161 -40.04052 -36.86396 -36.40368 -35.78090 -33.38551 -32.37236 -29.37461 -27.64037 -25.37927 -24.80156 -23.57851 -23.17997 -21.77924 -21.09342 -19.37843 -18.89705 -18.38409 -17.56027 -17.41637 -17.15277 -17.00382 -16.71403 -16.17229 -15.64401 -15.54833 -15.37984 -15.12054 -15.05232 -14.72971 -14.64412 -14.60167 -14.44107 -13.73569 -13.27498 -13.23076 -13.01985 -12.69122 -12.51438 -12.30126 -12.20433 -12.09702 -11.88449 -11.45364 -11.30742 -11.00130 -10.81952 -10.54954 -10.20170 -8.77533 -7.92384 -5.39682 1.04646 1.46936 1.48159 1.57687 1.85945 2.03004 2.33195 2.47533 2.75493 3.15629 3.22840 3.34904 3.48228 3.50587 3.83014 3.95727 4.04966 4.22994 4.45088 4.47782 4.50192 4.60767 4.62891 4.70637 4.75552 4.83156 4.88517 5.04210 5.22546 5.28547 5.54098 5.60096 6.23641 6.31206 6.40526 7.04685 7.06510 7.72980 8.26466 9.13606 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.038144 B = 0.003089 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.889337 B = 9063.584908 C = 9352.249514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.293 1.293 7 C -0.268 4.268 8 H 0.075 0.925 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.391 6.391 13 C 0.079 3.921 14 H 0.074 0.926 15 C 0.140 3.860 16 N -0.703 5.703 17 C 0.535 3.465 18 O -0.570 6.570 19 C -0.186 4.186 20 H 0.187 0.813 21 C -0.116 4.116 22 C 0.198 3.802 23 F -0.156 7.156 24 F -0.175 7.175 25 C 0.116 3.884 26 H 0.252 0.748 27 H 0.068 0.932 28 H -0.004 1.004 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.417 0.583 34 H 0.127 0.873 35 H 0.172 0.828 36 H 0.016 0.984 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.857 -18.439 10.037 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.192 1.192 6 H -0.219 1.219 7 C -0.398 4.398 8 H 0.092 0.908 9 N -0.337 5.337 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.310 6.310 13 C 0.019 3.981 14 H 0.092 0.908 15 C 0.015 3.985 16 N -0.353 5.353 17 C 0.322 3.678 18 O -0.449 6.449 19 C -0.208 4.208 20 H 0.205 0.795 21 C -0.154 4.154 22 C 0.161 3.839 23 F -0.137 7.137 24 F -0.156 7.156 25 C -0.011 4.011 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.014 0.986 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.254 0.746 34 H 0.145 0.855 35 H 0.189 0.811 36 H 0.034 0.966 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.682 -18.737 9.255 22.265 hybrid contribution -0.465 1.690 -0.029 1.754 sum 7.217 -17.047 9.225 20.683 Atomic orbital electron populations 1.70197 1.06809 1.26127 1.55077 1.25846 0.96076 1.01718 1.00976 0.85226 0.77973 0.79025 0.77793 1.21108 1.19235 1.21871 1.19562 0.93226 0.85594 1.41422 0.90781 1.44374 1.33772 1.01876 1.53717 1.21321 0.87868 0.98526 0.90629 1.23155 1.00790 0.83467 0.94873 1.87797 1.41948 1.31881 1.69409 1.22754 0.87480 0.94081 0.93777 0.90781 1.21264 1.02198 0.86407 0.88616 1.45725 1.70711 1.07722 1.11184 1.19742 0.76068 0.82649 0.89383 1.90718 1.51775 1.76942 1.25478 1.23819 1.01834 0.93380 1.01738 0.79533 1.24489 0.91405 0.92835 1.06662 1.20040 0.82517 1.06846 0.74520 1.93053 1.93689 1.92874 1.34073 1.93041 1.60601 1.97009 1.64915 1.21698 0.98811 0.86287 0.94285 0.93934 0.91357 0.98551 0.92784 0.87437 0.92257 0.88685 0.74595 0.85519 0.81056 0.96646 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.63 11.14 21.65 0.24 -54.39 16 2 C -0.05 -2.77 4.94 84.86 0.42 -2.35 16 3 Si 0.97 43.58 29.59 68.60 2.03 45.61 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 7 C -0.27 -14.39 9.65 84.04 0.81 -13.58 16 8 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 9 N -0.61 -30.32 3.04 -696.72 -2.12 -32.44 16 10 C 0.14 6.77 5.45 86.36 0.47 7.24 16 11 C 0.05 1.97 6.98 72.08 0.50 2.47 16 12 O -0.39 -13.55 10.13 -148.98 -1.51 -15.06 16 13 C 0.08 2.51 2.88 30.83 0.09 2.60 16 14 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 15 C 0.14 3.84 5.37 86.38 0.46 4.30 16 16 N -0.70 -16.01 5.45 -463.04 -2.52 -18.53 16 17 C 0.54 12.61 7.25 87.66 0.64 13.24 16 18 O -0.57 -17.82 16.26 -3.04 -0.05 -17.87 16 19 C -0.19 -2.74 6.17 -11.54 -0.07 -2.81 16 20 H 0.19 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.12 -1.36 10.02 30.61 0.31 -1.05 16 22 C 0.20 3.59 5.20 30.62 0.16 3.75 16 23 F -0.16 -2.82 17.60 44.97 0.79 -2.02 16 24 F -0.18 -4.54 17.13 44.97 0.77 -3.77 16 25 C 0.12 4.67 6.05 86.49 0.52 5.19 16 26 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 27 H 0.07 3.60 6.13 -2.39 -0.01 3.59 16 28 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 31 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.42 7.69 8.35 -92.71 -0.77 6.91 16 34 H 0.13 1.81 7.67 -2.39 -0.02 1.79 16 35 H 0.17 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 2.82 7.96 -2.38 -0.02 2.80 16 Total: -1.00 -70.59 321.20 2.27 -68.32 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.33 Total: 11.15 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 4.31 Total: 19.00 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -4.40 Total: -105.36 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.56 Total: -32.93 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 1.56 Total: -5.80 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.59 2.27 -68.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035368713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.321 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds