Wall clock time and date at job start Tue Mar 31 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48504 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46923 * 300.00059 * 3 2 1 6 6 H 1.48499 * 109.47229 * 59.99763 * 3 2 1 7 7 C 1.38811 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00130 * 163.48210 * 7 2 1 9 9 N 1.36941 * 119.99898 * 343.20035 * 7 2 1 10 10 C 1.47174 * 121.22781 * 333.66858 * 9 7 2 11 11 C 1.53230 * 108.69348 * 230.96215 * 10 9 7 12 12 O 1.43072 * 109.44434 * 308.41133 * 11 10 9 13 13 C 1.42686 * 113.88334 * 61.64151 * 12 11 10 14 14 H 1.08998 * 108.93001 * 54.96409 * 13 12 11 15 15 C 1.52513 * 110.61425 * 174.66778 * 13 12 11 16 16 C 1.53148 * 109.79761 * 61.28304 * 15 13 12 17 17 N 1.46990 * 108.43651 * 54.54454 * 16 15 13 18 18 C 1.34772 * 120.72715 * 125.42363 * 17 16 15 19 19 O 1.21284 * 120.00318 * 179.97438 * 18 17 16 20 20 C 1.50704 * 119.99937 * 359.97438 * 18 17 16 21 21 F 1.39904 * 109.47024 * 55.00118 * 20 18 17 22 22 F 1.39899 * 109.47139 * 174.99767 * 20 18 17 23 23 C 1.46797 * 118.55195 * 305.44299 * 17 16 15 24 24 C 1.47595 * 121.22160 * 153.38744 * 9 7 2 25 25 H 1.08994 * 110.31694 * 7.68959 * 24 9 7 26 26 H 0.97000 * 120.00508 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.59813 * 350.72405 * 10 9 7 28 28 H 1.08993 * 109.60162 * 111.03354 * 10 9 7 29 29 H 1.09000 * 109.47661 * 68.39817 * 11 10 9 30 30 H 1.08993 * 109.47851 * 188.41431 * 11 10 9 31 31 H 1.09005 * 109.41819 * 181.38604 * 15 13 12 32 32 H 1.09001 * 109.41421 * 301.24869 * 15 13 12 33 33 H 1.09002 * 109.64335 * 174.22258 * 16 15 13 34 34 H 1.08994 * 109.64856 * 294.64185 * 16 15 13 35 35 H 1.09001 * 109.47187 * 295.00384 * 20 18 17 36 36 H 1.09001 * 109.51560 * 174.19985 * 23 17 16 37 37 H 1.08994 * 109.51974 * 294.38202 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0568 -1.2215 -0.2654 9 7 1.3694 -2.3626 0.3438 10 6 0.1960 -2.3522 1.2322 11 6 0.4228 -3.3676 2.3572 12 8 0.7886 -4.6303 1.7925 13 6 2.0023 -4.5981 1.0429 14 1 2.7967 -4.1988 1.6733 15 6 2.3896 -6.0012 0.5877 16 6 1.2967 -6.5721 -0.3205 17 7 1.0631 -5.6240 -1.4193 18 6 1.1421 -6.0252 -2.7035 19 8 0.9464 -5.2319 -3.5998 20 6 1.4735 -7.4596 -3.0258 21 9 0.5688 -8.3049 -2.3744 22 9 1.3861 -7.6592 -4.4077 23 6 0.7424 -4.2305 -1.0873 24 6 1.8262 -3.6692 -0.1684 25 1 2.7703 -3.5576 -0.7016 26 1 -0.4851 0.8400 0.0004 27 1 0.0687 -1.3570 1.6581 28 1 -0.6943 -2.6238 0.6652 29 1 1.2226 -3.0156 3.0087 30 1 -0.4941 -3.4800 2.9355 31 1 3.3305 -5.9574 0.0390 32 1 2.5081 -6.6450 1.4593 33 1 1.6210 -7.5304 -0.7263 34 1 0.3789 -6.7082 0.2515 35 1 2.4860 -7.6829 -2.6896 36 1 0.7006 -3.6387 -2.0017 37 1 -0.2221 -4.1894 -0.5813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074128813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:22 Heat of formation + Delta-G solvation = -140.993927 kcal Electronic energy + Delta-G solvation = -24882.593187 eV Core-core repulsion = 20910.979309 eV Total energy + Delta-G solvation = -3971.613878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.26747 -47.28205 -40.17898 -38.61635 -35.96765 -34.73716 -32.01236 -31.63457 -29.84013 -28.48425 -27.12448 -24.71736 -23.92023 -22.86102 -21.62494 -20.24967 -18.67655 -18.17141 -17.77049 -17.23705 -16.99145 -15.90043 -15.57308 -15.30060 -15.06440 -14.69064 -14.49394 -14.11399 -14.05521 -13.78394 -13.63022 -13.37204 -13.17364 -12.76598 -12.47730 -12.42714 -12.23004 -12.04290 -11.45574 -11.14636 -11.04867 -10.87279 -10.70707 -10.31866 -10.27837 -10.09844 -9.76255 -9.69950 -9.08522 -8.71998 -8.45342 -6.85089 -5.93436 -3.38322 2.26407 2.63896 3.29655 3.37907 3.39738 3.64880 3.90320 4.23679 4.34311 4.45392 4.55962 4.82826 4.98312 5.19886 5.23009 5.33146 5.51867 5.62691 5.66360 5.84861 5.93071 5.98108 6.07331 6.17949 6.24816 6.34093 6.43829 6.59257 6.76015 7.00080 7.34811 7.41264 7.64354 7.80209 7.93898 8.22858 9.00799 9.62188 10.19052 11.13965 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.005302 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.565310 B = 5279.529980 C = 6084.348417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.070 0.930 9 N -0.583 5.583 10 C 0.136 3.864 11 C 0.040 3.960 12 O -0.387 6.387 13 C 0.079 3.921 14 H 0.055 0.945 15 C -0.124 4.124 16 C 0.104 3.896 17 N -0.588 5.588 18 C 0.466 3.534 19 O -0.507 6.507 20 C 0.257 3.743 21 F -0.189 7.189 22 F -0.179 7.179 23 C 0.103 3.897 24 C 0.133 3.867 25 H 0.076 0.924 26 H 0.256 0.744 27 H 0.096 0.904 28 H 0.029 0.971 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -14.721 2.241 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.088 0.912 9 N -0.305 5.305 10 C 0.010 3.990 11 C -0.038 4.038 12 O -0.306 6.306 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.162 4.162 16 C -0.018 4.018 17 N -0.321 5.321 18 C 0.249 3.751 19 O -0.381 6.381 20 C 0.199 3.801 21 F -0.170 7.170 22 F -0.160 7.160 23 C -0.019 4.019 24 C 0.025 3.975 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.110 0.890 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.713 -14.261 1.775 14.843 hybrid contribution 0.360 1.055 -0.061 1.117 sum 4.074 -13.206 1.714 13.926 Atomic orbital electron populations 1.70021 1.05310 1.25825 1.53080 1.25084 0.95356 0.98605 1.00226 0.86164 0.79331 0.83527 0.77390 1.20159 1.21528 1.21409 1.19210 0.92522 0.84102 1.42859 0.91211 1.44352 1.33901 1.00727 1.51528 1.21491 0.88994 0.98724 0.89761 1.23329 0.98986 0.84789 0.96667 1.87716 1.41406 1.32125 1.69389 1.22329 0.87428 0.94442 0.93898 0.92691 1.21830 0.98268 0.96490 0.99652 1.21878 1.00369 0.91194 0.88389 1.48348 1.67155 1.12344 1.04270 1.20959 0.80219 0.89782 0.84189 1.90820 1.48174 1.53721 1.45411 1.21678 0.94765 0.88106 0.75525 1.93026 1.70735 1.72722 1.80549 1.93042 1.97274 1.95269 1.30415 1.22414 1.00438 0.77941 1.01140 1.21623 0.96469 0.87321 0.92124 0.90540 0.93373 0.88548 0.95248 0.93991 0.90025 0.90300 0.89954 0.90206 0.89612 0.84965 0.88977 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 11.15 55.49 0.62 -24.49 16 2 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 3 Si 0.91 21.05 29.58 -169.99 -5.03 16.02 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -6.74 9.69 -15.06 -0.15 -6.89 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.58 -13.70 2.72 -163.91 -0.45 -14.14 16 10 C 0.14 3.04 4.93 -3.56 -0.02 3.02 16 11 C 0.04 0.73 6.98 37.28 0.26 0.99 16 12 O -0.39 -6.74 9.59 -35.23 -0.34 -7.08 16 13 C 0.08 1.28 2.74 -26.64 -0.07 1.21 16 14 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 15 C -0.12 -1.45 5.82 -26.90 -0.16 -1.61 16 16 C 0.10 1.24 5.75 -3.70 -0.02 1.21 16 17 N -0.59 -9.11 2.96 -173.10 -0.51 -9.63 16 18 C 0.47 7.44 7.55 -10.99 -0.08 7.36 16 19 O -0.51 -10.39 16.04 5.55 0.09 -10.30 16 20 C 0.26 2.98 4.62 36.01 0.17 3.15 16 21 F -0.19 -2.20 15.52 2.25 0.03 -2.16 16 22 F -0.18 -2.48 16.95 2.25 0.04 -2.44 16 23 C 0.10 2.01 5.61 -4.00 -0.02 1.99 16 24 C 0.13 2.61 3.02 -67.10 -0.20 2.41 16 25 H 0.08 1.52 7.99 -51.93 -0.42 1.11 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.10 2.40 6.14 -51.93 -0.32 2.08 16 28 H 0.03 0.71 7.17 -51.93 -0.37 0.33 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.70 5.33 -51.93 -0.28 0.42 16 34 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 35 H 0.13 0.93 7.93 -51.93 -0.41 0.51 16 36 H 0.09 2.09 7.00 -51.93 -0.36 1.73 16 37 H 0.08 1.58 6.56 -51.93 -0.34 1.23 16 LS Contribution 300.45 15.07 4.53 4.53 Total: -1.00 -30.80 300.45 -5.97 -36.77 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.57 Total: -0.01 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -0.38 Total: 12.93 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.34 Total: -48.25 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.25 Total: -17.39 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.07 Total: -4.60 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.80 -5.97 -36.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074128813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.220 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds