Wall clock time and date at job start Tue Mar 31 2020 03:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00236 * 2 1 4 4 H 1.48500 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47067 * 299.99790 * 3 2 1 6 6 H 1.48497 * 109.47154 * 59.99718 * 3 2 1 7 7 C 1.38813 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99489 * 0.02562 * 7 2 1 10 10 C 1.47435 * 125.64654 * 180.02562 * 9 7 2 11 11 C 1.54904 * 104.83391 * 204.09153 * 10 9 7 12 12 H 1.09001 * 111.00339 * 81.06166 * 11 10 9 13 13 N 1.46496 * 111.00460 * 204.91748 * 11 10 9 14 14 C 1.34779 * 120.00148 * 267.19580 * 13 11 10 15 15 O 1.21283 * 119.99593 * 359.97438 * 14 13 11 16 16 C 1.50694 * 120.00083 * 180.02562 * 14 13 11 17 17 C 1.50288 * 109.46631 * 300.02856 * 16 14 13 18 18 C 1.32326 * 121.60049 * 303.32415 * 17 16 14 19 19 C 1.45201 * 123.00093 * 1.02203 * 18 17 16 20 20 C 1.32937 * 125.20088 * 319.51678 * 19 18 17 21 21 C 1.45205 * 125.19981 * 0.03052 * 20 19 18 22 22 C 1.32302 * 123.02002 * 40.42833 * 21 20 19 23 23 C 1.55164 * 101.58098 * 322.99259 * 11 10 9 24 24 H 1.09002 * 110.72127 * 153.86399 * 23 11 10 25 25 O 1.42896 * 110.86919 * 277.06896 * 23 11 10 26 26 C 1.47022 * 125.65256 * 359.96920 * 9 7 2 27 27 H 0.96999 * 119.99714 * 0.02562 * 1 2 3 28 28 H 1.08997 * 110.36223 * 322.93371 * 10 9 7 29 29 H 1.09002 * 110.36419 * 85.14194 * 10 9 7 30 30 H 0.97002 * 119.99792 * 87.19674 * 13 11 10 31 31 H 1.09001 * 109.46918 * 60.00844 * 16 14 13 32 32 H 1.07999 * 119.20350 * 123.32419 * 17 16 14 33 33 H 1.08003 * 118.50465 * 181.02600 * 18 17 16 34 34 H 1.08002 * 117.39852 * 139.55354 * 19 18 17 35 35 H 1.08002 * 117.40456 * 179.97438 * 20 19 18 36 36 H 1.07999 * 118.48906 * 220.40748 * 21 20 19 37 37 H 1.07999 * 119.19755 * 179.00349 * 22 21 20 38 38 H 0.96702 * 113.99631 * 177.45491 * 25 23 11 39 39 H 1.09002 * 109.87665 * 59.56051 * 26 9 7 40 40 H 1.08995 * 109.88258 * 298.39996 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.9334 -3.7312 0.0016 11 6 0.8520 -4.6564 -0.6101 12 1 0.8572 -4.5970 -1.6984 13 7 1.0291 -6.0395 -0.1609 14 6 1.7595 -6.8993 -0.8983 15 8 2.2697 -6.5280 -1.9341 16 6 1.9411 -8.3222 -0.4366 17 6 2.6160 -8.3307 0.9063 18 6 3.7874 -7.7456 1.0973 19 6 4.4986 -7.0381 0.0475 20 6 4.5926 -7.4365 -1.2172 21 6 3.9992 -8.6455 -1.7603 22 6 2.7895 -9.0664 -1.4291 23 6 -0.4485 -4.0441 -0.0259 24 1 -1.2984 -4.2517 -0.6760 25 8 -0.6929 -4.5329 1.2945 26 6 -0.1376 -2.5327 0.0006 27 1 -0.4850 0.8401 -0.0004 28 1 2.8331 -3.7408 -0.6136 29 1 2.1679 -4.0406 1.0202 30 1 0.6207 -6.3365 0.6673 31 1 0.9673 -8.8054 -0.3566 32 1 2.1332 -8.8263 1.7355 33 1 4.2350 -7.7966 2.0789 34 1 4.9908 -6.1150 0.3157 35 1 5.1543 -6.8109 -1.8951 36 1 4.5717 -9.2276 -2.4672 37 1 2.4021 -9.9664 -1.8833 38 1 -1.4736 -4.1498 1.7174 39 1 -0.5576 -2.0524 -0.8831 40 1 -0.5544 -2.0841 0.9023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083497935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:29 Heat of formation + Delta-G solvation = 3.762638 kcal Electronic energy + Delta-G solvation = -23723.345816 eV Core-core repulsion = 20312.238584 eV Total energy + Delta-G solvation = -3411.107233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29238 -38.33983 -36.79562 -34.80492 -33.95685 -32.40796 -32.23773 -31.40582 -28.49598 -27.25135 -26.09593 -24.34533 -23.52553 -21.30420 -20.41702 -19.92388 -18.63230 -17.50205 -17.29222 -17.14295 -16.61004 -16.24379 -15.21741 -14.80127 -14.57576 -14.23252 -14.04400 -13.92744 -13.43802 -13.09951 -12.70797 -12.50999 -12.47532 -12.26719 -12.06161 -11.89342 -11.26768 -10.93977 -10.90478 -10.83159 -10.49149 -10.39678 -10.15670 -10.08130 -9.81063 -9.68607 -9.29287 -9.19525 -8.67024 -8.54828 -8.11456 -6.85557 -5.74002 -3.06602 1.30758 2.04116 2.90922 3.27825 3.39814 3.45537 3.47875 3.58583 4.49554 4.60112 4.74687 4.85307 4.94719 5.13383 5.15834 5.24391 5.34920 5.41192 5.47526 5.57648 5.65098 5.75882 5.91459 5.95125 6.01287 6.13808 6.27037 6.46726 6.54856 6.68448 6.72310 6.78554 6.84984 6.92074 7.01769 7.35444 7.45932 7.73896 7.95597 8.10563 8.21117 8.61893 9.19130 9.79448 10.44292 11.38377 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.004498 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.020131 B = 6223.031038 C = 6829.181288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.135 3.865 11 C 0.141 3.859 12 H 0.102 0.898 13 N -0.705 5.705 14 C 0.519 3.481 15 O -0.534 6.534 16 C -0.046 4.046 17 C -0.150 4.150 18 C -0.102 4.102 19 C -0.144 4.144 20 C -0.077 4.077 21 C -0.101 4.101 22 C -0.130 4.130 23 C 0.067 3.933 24 H 0.059 0.941 25 O -0.567 6.567 26 C 0.154 3.846 27 H 0.252 0.748 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.405 0.595 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.379 0.621 39 H 0.055 0.945 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -18.477 1.406 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.007 3.993 11 C 0.035 3.965 12 H 0.120 0.880 13 N -0.356 5.356 14 C 0.304 3.696 15 O -0.411 6.411 16 C -0.068 4.068 17 C -0.168 4.168 18 C -0.120 4.120 19 C -0.162 4.162 20 C -0.095 4.095 21 C -0.119 4.119 22 C -0.148 4.148 23 C 0.007 3.993 24 H 0.077 0.923 25 O -0.374 6.374 26 C 0.029 3.971 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.241 0.759 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.226 0.774 39 H 0.073 0.927 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.375 -18.301 0.520 18.462 hybrid contribution -0.315 1.215 0.554 1.372 sum 2.060 -17.086 1.074 17.244 Atomic orbital electron populations 1.69924 1.04907 1.24954 1.57698 1.24780 0.95761 0.97670 1.02325 0.86010 0.78768 0.83607 0.77212 1.20479 1.21727 1.21766 1.19135 0.90550 0.82214 1.43161 0.90289 1.44295 1.01255 0.99961 1.87271 1.21793 0.94518 0.85655 0.97284 1.22284 0.95033 0.79905 0.99289 0.87975 1.45693 1.52776 1.10712 1.26372 1.20379 0.78157 0.86996 0.84038 1.90689 1.47652 1.78390 1.24328 1.19199 1.00097 0.93819 0.93680 1.22877 0.97079 1.01550 0.95304 1.21133 0.95395 0.96857 0.98641 1.21037 1.02076 0.99638 0.93438 1.21016 0.98385 0.95200 0.94902 1.21006 0.96069 0.95598 0.99200 1.22668 0.95445 1.00156 0.96563 1.23506 0.95680 0.96897 0.83203 0.92314 1.86242 1.51736 1.69377 1.30005 1.21860 0.85591 0.87817 1.01862 0.93809 0.94076 0.95745 0.75943 0.87858 0.86112 0.86491 0.86930 0.86976 0.86746 0.86491 0.77358 0.92728 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.97 10.31 55.49 0.57 -26.40 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.62 3.40 -170.07 -0.58 -16.20 16 10 C 0.13 3.01 6.92 -2.53 -0.02 2.99 16 11 C 0.14 2.67 3.31 -65.78 -0.22 2.46 16 12 H 0.10 2.09 7.54 -51.93 -0.39 1.70 16 13 N -0.70 -11.11 5.07 -51.73 -0.26 -11.38 16 14 C 0.52 8.13 5.48 -10.99 -0.06 8.07 16 15 O -0.53 -10.16 13.31 5.55 0.07 -10.09 16 16 C -0.05 -0.55 2.89 -94.48 -0.27 -0.82 16 17 C -0.15 -1.62 8.89 -36.43 -0.32 -1.95 16 18 C -0.10 -1.22 9.58 -38.75 -0.37 -1.59 16 19 C -0.14 -1.97 8.53 -38.65 -0.33 -2.30 16 20 C -0.08 -1.06 7.35 -38.65 -0.28 -1.35 16 21 C -0.10 -1.24 9.09 -38.74 -0.35 -1.59 16 22 C -0.13 -1.50 8.78 -36.44 -0.32 -1.82 16 23 C 0.07 1.23 4.19 -24.89 -0.10 1.12 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 O -0.57 -9.15 12.16 -35.23 -0.43 -9.58 16 26 C 0.15 3.65 5.14 -3.06 -0.02 3.64 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.41 5.78 7.48 -40.82 -0.31 5.48 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.38 4.78 9.12 45.56 0.42 5.20 16 39 H 0.05 1.43 7.38 -51.93 -0.38 1.04 16 40 H 0.05 1.34 7.43 -51.93 -0.39 0.96 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -33.00 327.04 -8.46 -41.46 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -4.82 Total: 9.94 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.92 Total: 0.01 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.27 Total: -53.97 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.35 Total: -19.67 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.00 -8.46 -41.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083497935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.227 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds