Wall clock time and date at job start Tue Mar 31 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48494 * 109.46751 * 270.00195 * 3 2 1 5 5 H 1.48500 * 109.46923 * 30.00007 * 3 2 1 6 6 H 1.48498 * 109.46939 * 149.99743 * 3 2 1 7 7 C 1.38813 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00078 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00071 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00310 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47368 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47559 * 179.97438 * 11 10 9 13 13 C 1.34767 * 120.00361 * 179.97438 * 12 11 10 14 14 O 1.21557 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.47845 * 120.00376 * 180.02562 * 13 12 11 16 16 C 1.39609 * 120.22288 * 0.30465 * 15 13 12 17 17 C 1.37745 * 119.74506 * 180.36473 * 16 15 13 18 18 C 1.38809 * 120.50972 * 359.45614 * 17 16 15 19 19 C 1.38076 * 119.99588 * 0.04633 * 18 17 16 20 20 C 1.38328 * 120.03036 * 0.33128 * 19 18 17 21 21 C 1.50776 * 121.33286 * 180.58408 * 19 18 17 22 22 C 1.52959 * 109.76452 * 342.65598 * 21 19 18 23 23 O 1.43200 * 108.46330 * 49.32954 * 22 21 19 24 24 C 1.42700 * 113.17215 * 289.31773 * 23 22 21 25 25 H 0.96996 * 120.00134 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99503 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47356 * 59.99902 * 10 9 7 28 28 H 1.09000 * 109.47021 * 299.99826 * 10 9 7 29 29 H 1.09005 * 109.46864 * 59.99898 * 11 10 9 30 30 H 1.08998 * 109.47257 * 300.00507 * 11 10 9 31 31 H 0.97006 * 119.99405 * 0.02562 * 12 11 10 32 32 H 1.08003 * 120.12573 * 0.10661 * 16 15 13 33 33 H 1.08002 * 119.74844 * 179.74264 * 17 16 15 34 34 H 1.08004 * 119.91912 * 179.81673 * 20 19 18 35 35 H 1.09006 * 109.42395 * 102.74495 * 21 19 18 36 36 H 1.08999 * 109.42255 * 222.61928 * 21 19 18 37 37 H 1.09001 * 109.63927 * 169.02899 * 22 21 19 38 38 H 1.09001 * 109.63118 * 289.64320 * 22 21 19 39 39 H 1.09004 * 109.33259 * 291.56793 * 24 23 22 40 40 H 1.08996 * 109.33431 * 172.07125 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6163 -2.1913 0.0000 12 7 6.3489 -3.4600 0.0006 13 6 7.6966 -3.4600 0.0002 14 8 8.3044 -2.4073 -0.0002 15 6 8.4359 -4.7403 0.0003 16 6 7.7427 -5.9521 -0.0057 17 6 8.4413 -7.1392 0.0020 18 6 9.8294 -7.1399 0.0043 19 6 10.5204 -5.9445 -0.0002 20 6 9.8299 -4.7458 -0.0001 21 6 12.0277 -5.9101 -0.0110 22 6 12.5792 -7.2722 0.4137 23 8 11.9169 -8.2874 -0.3489 24 6 10.5495 -8.4637 0.0190 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3621 -0.0004 27 1 3.8485 -3.0426 -0.8897 28 1 3.8492 -3.0422 0.8902 29 1 5.8796 -1.6197 0.8900 30 1 5.8797 -1.6197 -0.8899 31 1 5.8639 -4.3001 0.0006 32 1 6.6627 -5.9588 -0.0121 33 1 7.9051 -8.0767 0.0017 34 1 10.3722 -3.8118 -0.0006 35 1 12.3777 -5.6748 -1.0161 36 1 12.3778 -5.1459 0.6829 37 1 13.6513 -7.3097 0.2206 38 1 12.3893 -7.4292 1.4755 39 1 10.4975 -8.8918 1.0201 40 1 10.0707 -9.1428 -0.6865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131203745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:34 Heat of formation + Delta-G solvation = -70.266163 kcal Electronic energy + Delta-G solvation = -21735.321193 eV Core-core repulsion = 18321.003831 eV Total energy + Delta-G solvation = -3414.317363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.62132 -40.51887 -38.32431 -37.47999 -35.66911 -34.12725 -33.56271 -32.87057 -30.48622 -29.93970 -27.13798 -25.26920 -24.94552 -23.52121 -23.05362 -22.61865 -20.70180 -19.88514 -18.72929 -17.83078 -17.36750 -16.95879 -16.78028 -16.64397 -16.41779 -15.75723 -15.68224 -15.46016 -15.34999 -15.00216 -14.70872 -14.60271 -14.31153 -13.98862 -13.47431 -13.31643 -13.29143 -13.19944 -12.75918 -12.64312 -12.48709 -12.10394 -12.07406 -11.84178 -11.69977 -11.23460 -11.05319 -10.70077 -10.31124 -9.86099 -9.68170 -9.38182 -8.06340 -5.41901 -0.29027 0.28675 1.38433 1.40062 1.47231 1.69504 1.95220 2.45668 2.71477 2.93002 3.25328 3.46837 3.58347 3.67150 3.79395 3.81792 3.94111 4.03100 4.15524 4.17109 4.25648 4.40431 4.44249 4.50573 4.54518 4.72261 4.80347 4.83504 4.92592 4.94937 5.05798 5.05858 5.21529 5.25299 5.29429 5.43181 5.71122 5.81917 6.12318 6.16436 6.40899 7.01382 7.06605 7.76051 7.93625 9.14280 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044746 B = 0.002460 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.602867 B =11380.840175 C =11955.574768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.060 4.060 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.254 1.254 7 C -0.238 4.238 8 H 0.065 0.935 9 N -0.759 5.759 10 C 0.150 3.850 11 C 0.122 3.878 12 N -0.705 5.705 13 C 0.554 3.446 14 O -0.583 6.583 15 C -0.147 4.147 16 C -0.086 4.086 17 C -0.113 4.113 18 C -0.099 4.099 19 C -0.094 4.094 20 C -0.072 4.072 21 C -0.117 4.117 22 C 0.057 3.943 23 O -0.394 6.394 24 C 0.096 3.904 25 H 0.259 0.741 26 H 0.367 0.633 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.416 0.584 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.773 -20.592 1.325 33.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.252 4.252 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.179 1.179 7 C -0.368 4.368 8 H 0.083 0.917 9 N -0.405 5.405 10 C 0.024 3.976 11 C -0.003 4.003 12 N -0.358 5.358 13 C 0.343 3.657 14 O -0.464 6.464 15 C -0.151 4.151 16 C -0.104 4.104 17 C -0.131 4.131 18 C -0.100 4.100 19 C -0.094 4.094 20 C -0.091 4.091 21 C -0.154 4.154 22 C -0.019 4.019 23 O -0.313 6.313 24 C 0.020 3.980 25 H 0.068 0.932 26 H 0.200 0.800 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.254 0.746 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 27.055 -20.057 1.183 33.700 hybrid contribution -0.580 1.462 0.135 1.579 sum 26.475 -18.595 1.318 32.380 Atomic orbital electron populations 1.69864 1.06984 1.26831 1.59220 1.25491 0.96142 1.01228 1.02370 0.85453 0.78638 0.79806 0.78181 1.20385 1.21991 1.17896 1.19005 0.82126 0.93825 1.41874 0.91721 1.42552 1.02818 1.03897 1.91279 1.20829 0.88448 0.88340 1.00005 1.21286 0.91056 0.86006 1.01960 1.45613 1.05738 1.10150 1.74251 1.18695 0.82171 0.89310 0.75502 1.90748 1.69084 1.34555 1.52061 1.19811 0.94451 0.92544 1.08247 1.21540 1.01163 0.90977 0.96720 1.21296 0.92918 0.99272 0.99623 1.20844 0.95044 0.96184 0.97928 1.19702 0.96883 0.91896 1.00926 1.21215 0.92857 0.98536 0.96525 1.21211 0.90005 1.00229 1.03941 1.22798 0.98258 0.85322 0.95532 1.88056 1.23422 1.57416 1.62357 1.21709 0.81083 0.92237 1.03006 0.93167 0.80036 0.93846 0.93918 0.91957 0.91879 0.74552 0.83036 0.81695 0.85812 0.89570 0.88447 0.86368 0.91562 0.89475 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.30 13.97 21.65 0.30 -61.99 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 3 Si 0.95 45.69 27.74 68.60 1.90 47.59 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.25 -11.17 6.52 99.48 0.65 -10.52 16 7 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 8 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 9 N -0.76 -35.16 5.41 -343.48 -1.86 -37.01 16 10 C 0.15 5.34 6.37 86.38 0.55 5.89 16 11 C 0.12 3.79 5.79 86.38 0.50 4.29 16 12 N -0.71 -17.89 5.51 -465.98 -2.57 -20.46 16 13 C 0.55 15.90 7.77 86.79 0.67 16.57 16 14 O -0.58 -21.52 16.35 -3.90 -0.06 -21.58 16 15 C -0.15 -3.32 5.87 -20.12 -0.12 -3.44 16 16 C -0.09 -1.34 9.54 22.48 0.21 -1.13 16 17 C -0.11 -1.39 9.65 22.29 0.22 -1.18 16 18 C -0.10 -1.40 5.82 -19.76 -0.11 -1.52 16 19 C -0.09 -1.62 5.77 -19.86 -0.11 -1.74 16 20 C -0.07 -1.58 9.22 22.57 0.21 -1.38 16 21 C -0.12 -1.49 6.00 29.86 0.18 -1.31 16 22 C 0.06 0.58 6.85 71.97 0.49 1.07 16 23 O -0.39 -5.49 10.80 -148.98 -1.61 -7.10 16 24 C 0.10 0.96 6.65 71.24 0.47 1.43 16 25 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 26 H 0.37 16.49 5.53 -92.70 -0.51 15.98 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.42 7.75 6.52 -92.70 -0.60 7.15 16 32 H 0.15 1.63 6.42 -2.91 -0.02 1.61 16 33 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.12 2.93 7.64 -2.91 -0.02 2.90 16 35 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.55 8.07 -2.39 -0.02 0.53 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -76.28 333.65 0.51 -75.77 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.11 Total: 22.81 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 4.51 Total: 1.97 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -4.12 Total: -119.47 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.67 Total: -28.68 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -76.28 0.51 -75.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131203745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.507 kcal (2) G-P(sol) polarization free energy of solvation -76.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds