Wall clock time and date at job start Tue Mar 31 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86801 * 120.00399 * 2 1 4 4 H 1.48498 * 109.47015 * 239.99662 * 3 2 1 5 5 H 1.48496 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46608 * 119.99801 * 3 2 1 7 7 C 1.38904 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99712 * 180.02562 * 7 2 1 9 9 N 1.36843 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.38366 * 119.99806 * 174.87328 * 9 7 2 11 11 C 1.39463 * 119.54413 * 5.74809 * 10 9 7 12 12 C 1.36879 * 119.37273 * 179.69254 * 11 10 9 13 13 C 1.40363 * 118.49022 * 0.55039 * 12 11 10 14 14 C 1.47539 * 120.47079 * 179.72982 * 13 12 11 15 15 O 1.21590 * 119.99852 * 333.89875 * 14 13 12 16 16 N 1.34776 * 119.99985 * 154.18251 * 14 13 12 17 17 C 1.47271 * 121.35303 * 173.77515 * 16 14 13 18 18 C 1.53466 * 107.92866 * 118.51343 * 17 16 14 19 19 N 1.45653 * 110.73954 * 46.91462 * 18 17 16 20 20 C 1.33380 * 124.58892 * 337.98006 * 19 18 17 21 21 O 1.21285 * 118.48717 * 184.29779 * 20 19 18 22 22 C 1.47053 * 121.35261 * 354.06578 * 16 14 13 23 23 C 1.39644 * 119.05212 * 359.44707 * 13 12 11 24 24 N 1.31602 * 120.53048 * 0.28531 * 23 13 12 25 25 H 0.96997 * 119.99481 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99922 * 354.86903 * 9 7 2 27 27 H 1.08000 * 120.31524 * 359.97438 * 11 10 9 28 28 H 1.07996 * 120.75697 * 180.29652 * 12 11 10 29 29 H 1.08998 * 109.71931 * 238.18745 * 17 16 14 30 30 H 1.08991 * 109.71801 * 358.85130 * 17 16 14 31 31 H 1.08997 * 109.33113 * 286.53184 * 18 17 16 32 32 H 1.08999 * 109.10416 * 167.15179 * 18 17 16 33 33 H 0.97001 * 117.70542 * 157.95130 * 19 18 17 34 34 H 1.09000 * 109.56534 * 342.53183 * 22 16 14 35 35 H 1.08997 * 109.56894 * 102.77429 * 22 16 14 36 36 H 1.08002 * 119.73430 * 180.29372 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6962 1.2126 7 6 2.0094 -1.2030 -0.0005 8 1 3.0895 -1.2030 -0.0001 9 7 1.3251 -2.3880 -0.0005 10 6 2.0127 -3.5839 -0.1082 11 6 3.4073 -3.5790 -0.0948 12 6 4.0839 -4.7647 -0.1951 13 6 3.3426 -5.9500 -0.3204 14 6 4.0272 -7.2517 -0.4376 15 8 5.1531 -7.3075 -0.8932 16 7 3.4024 -8.3795 -0.0449 17 6 4.0007 -9.7058 -0.2722 18 6 4.2299 -10.3614 1.0963 19 7 3.0460 -10.2325 1.9348 20 6 2.0976 -9.3095 1.7690 21 8 1.1975 -9.2526 2.5800 22 6 2.0926 -8.3359 0.6221 23 6 1.9479 -5.8802 -0.3266 24 7 1.3362 -4.7197 -0.2222 25 1 -0.4849 0.8401 0.0004 26 1 0.3580 -2.3897 0.0750 27 1 3.9483 -2.6489 -0.0016 28 1 5.1635 -4.7872 -0.1823 29 1 3.3229 -10.3180 -0.8670 30 1 4.9515 -9.5959 -0.7936 31 1 5.0736 -9.8796 1.5904 32 1 4.4543 -11.4183 0.9525 33 1 2.9395 -10.8624 2.6647 34 1 1.9078 -7.3297 0.9983 35 1 1.3121 -8.6094 -0.0878 36 1 1.3667 -6.7859 -0.4176 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:04 Heat of formation + Delta-G solvation = -6.111625 kcal Electronic energy + Delta-G solvation = -22444.119776 eV Core-core repulsion = 18929.044020 eV Total energy + Delta-G solvation = -3515.075756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.78295 -39.42870 -38.42128 -36.32096 -35.59379 -34.31129 -32.34558 -31.49873 -30.51989 -28.72209 -27.36826 -25.42827 -24.10513 -22.76219 -22.11198 -20.39005 -19.23645 -18.36772 -17.55394 -17.17473 -16.94760 -16.26591 -15.88249 -15.53500 -15.30423 -14.90039 -14.57093 -14.29612 -13.97957 -13.66759 -13.32154 -13.07458 -12.76467 -12.69956 -12.21202 -12.19491 -11.97580 -11.77731 -11.53179 -11.41143 -10.76430 -10.64920 -10.54306 -10.33621 -9.57888 -9.34126 -9.14498 -8.94397 -8.68825 -8.48865 -7.22369 -6.95054 -4.11601 1.70658 2.31082 2.46629 2.80499 2.96898 2.99505 3.01759 3.14372 3.40810 3.75639 4.29229 4.46797 4.50778 4.65371 4.83686 4.90683 5.01030 5.16134 5.22201 5.30444 5.37141 5.58389 5.60306 5.73764 6.07795 6.27177 6.31236 6.54252 6.61178 6.83479 6.90469 7.06772 7.10430 7.30721 7.50432 7.65305 8.00157 8.26677 8.50334 8.65443 8.96322 9.36085 10.18952 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.029575 B = 0.003515 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.508595 B = 7964.836323 C = 8571.070367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.030 3.970 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.497 5.497 10 C 0.355 3.645 11 C -0.258 4.258 12 C 0.024 3.976 13 C -0.348 4.348 14 C 0.591 3.409 15 O -0.557 6.557 16 N -0.627 5.627 17 C 0.098 3.902 18 C 0.097 3.903 19 N -0.719 5.719 20 C 0.513 3.487 21 O -0.547 6.547 22 C 0.086 3.914 23 C 0.187 3.813 24 N -0.573 5.573 25 H 0.284 0.716 26 H 0.407 0.593 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.398 0.602 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 -14.954 0.478 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.096 5.096 10 C 0.110 3.890 11 C -0.284 4.284 12 C -0.001 4.001 13 C -0.361 4.361 14 C 0.386 3.614 15 O -0.436 6.436 16 N -0.363 5.363 17 C -0.025 4.025 18 C -0.029 4.029 19 N -0.372 5.372 20 C 0.299 3.701 21 O -0.424 6.424 22 C -0.040 4.040 23 C 0.018 3.982 24 N -0.293 5.293 25 H 0.095 0.905 26 H 0.243 0.757 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.233 0.767 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.953 -14.046 0.480 14.901 hybrid contribution 0.770 0.395 0.305 0.918 sum 5.724 -13.651 0.785 14.823 Atomic orbital electron populations 1.69665 1.06368 1.29870 1.43951 1.25548 0.95842 1.00650 0.95755 0.85722 0.78936 0.79060 0.79631 1.19136 1.20293 1.19169 1.19935 0.93571 0.81959 1.48214 0.87031 1.40969 1.09684 1.01915 1.57080 1.18368 0.88794 0.86003 0.95862 1.20790 0.93375 0.98550 1.15726 1.20651 0.98775 0.90555 0.90122 1.19590 0.94660 0.92576 1.29314 1.18230 0.84648 0.83016 0.75521 1.90682 1.19166 1.86569 1.47173 1.48042 1.20535 1.06210 1.61536 1.21948 1.01591 0.83370 0.95576 1.21856 0.87597 1.01541 0.91873 1.45391 1.23225 1.34111 1.34430 1.20510 0.81312 0.81271 0.87023 1.90806 1.36285 1.71600 1.43682 1.22528 0.86795 1.01844 0.92793 1.22680 0.90590 0.94675 0.90277 1.67131 1.39869 0.97554 1.24720 0.90544 0.75716 0.85531 0.86276 0.90586 0.87027 0.91117 0.89533 0.76703 0.84325 0.87664 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.54 13.06 55.50 0.72 -20.81 16 2 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 3 Si 0.94 18.20 29.55 -169.99 -5.02 13.17 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.31 -7.34 9.53 -15.07 -0.14 -7.48 16 8 H 0.11 2.52 5.64 -52.48 -0.30 2.22 16 9 N -0.50 -11.92 5.41 -11.16 -0.06 -11.98 16 10 C 0.36 8.04 7.60 -155.27 -1.18 6.86 16 11 C -0.26 -5.40 9.26 -39.62 -0.37 -5.76 16 12 C 0.02 0.47 9.66 -39.27 -0.38 0.09 16 13 C -0.35 -6.41 5.54 -104.78 -0.58 -6.99 16 14 C 0.59 9.93 7.52 -12.47 -0.09 9.84 16 15 O -0.56 -10.65 16.19 5.29 0.09 -10.57 16 16 N -0.63 -8.07 2.97 -175.09 -0.52 -8.59 16 17 C 0.10 0.91 6.55 -3.38 -0.02 0.89 16 18 C 0.10 0.71 7.35 -4.26 -0.03 0.68 16 19 N -0.72 -6.79 5.42 -61.07 -0.33 -7.13 16 20 C 0.51 6.57 7.84 -11.73 -0.09 6.48 16 21 O -0.55 -9.05 17.80 5.55 0.10 -8.95 16 22 C 0.09 1.06 4.68 -5.02 -0.02 1.03 16 23 C 0.19 3.40 8.71 -17.13 -0.15 3.25 16 24 N -0.57 -12.24 10.39 -12.12 -0.13 -12.36 16 25 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 26 H 0.41 10.07 8.02 -40.82 -0.33 9.74 16 27 H 0.13 2.55 5.93 -52.49 -0.31 2.24 16 28 H 0.12 2.14 7.93 -52.49 -0.42 1.72 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 1.10 7.08 -51.93 -0.37 0.73 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.40 3.17 8.80 -40.82 -0.36 2.82 16 34 H 0.14 1.98 4.83 -51.93 -0.25 1.73 16 35 H 0.11 1.05 7.58 -51.93 -0.39 0.66 16 36 H 0.15 2.16 4.82 -52.49 -0.25 1.91 16 LS Contribution 305.22 15.07 4.60 4.60 Total: -1.00 -30.05 305.22 -7.09 -37.14 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -3.38 Total: 15.98 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -3.16 Total: 9.50 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.31 Total: -60.87 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.18 Total: -19.52 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.05 -7.09 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.031 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds