Wall clock time and date at job start Tue Mar 31 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99744 * 2 1 4 4 H 1.48502 * 109.46787 * 269.99933 * 3 2 1 5 5 H 1.48500 * 109.47366 * 29.99764 * 3 2 1 6 6 H 1.48494 * 109.46990 * 150.00008 * 3 2 1 7 7 C 1.37875 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99391 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00254 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.35941 * 116.99838 * 180.02562 * 10 9 7 12 12 C 1.38751 * 119.98681 * 359.72194 * 11 10 9 13 13 C 1.38065 * 120.00884 * 179.76465 * 12 11 10 14 14 C 1.38839 * 119.98730 * 0.51485 * 13 12 11 15 15 N 1.40267 * 120.00871 * 179.76140 * 14 13 12 16 16 N 1.40436 * 126.78938 * 45.16787 * 15 14 13 17 17 C 1.31128 * 106.78550 * 179.97438 * 16 15 14 18 18 O 1.35847 * 125.56544 * 180.02562 * 17 16 15 19 19 N 1.33555 * 108.86929 * 359.97438 * 17 16 15 20 20 C 1.30932 * 109.79392 * 359.73031 * 19 17 16 21 21 C 1.50700 * 125.93304 * 180.29448 * 20 19 17 22 22 N 1.46902 * 109.47119 * 264.36054 * 21 20 19 23 23 C 1.38841 * 119.97695 * 359.74202 * 14 13 12 24 24 C 1.38056 * 119.99023 * 0.02562 * 23 14 13 25 25 H 0.96999 * 120.00526 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46859 * 60.00217 * 9 7 2 27 27 H 1.08991 * 109.47022 * 300.00124 * 9 7 2 28 28 H 1.08004 * 119.99063 * 0.02562 * 12 11 10 29 29 H 1.07997 * 120.00159 * 180.25675 * 13 12 11 30 30 H 0.96701 * 114.00402 * 90.00019 * 18 17 16 31 31 H 1.08997 * 109.46854 * 24.36423 * 21 20 19 32 32 H 1.09003 * 109.46851 * 144.36499 * 21 20 19 33 33 H 1.00895 * 111.00191 * 178.49020 * 22 21 20 34 34 H 1.00902 * 111.00128 * 302.45194 * 22 21 20 35 35 H 1.08001 * 120.00496 * 180.02562 * 23 14 13 36 36 H 1.08000 * 119.99690 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 8 3.9879 -2.5412 0.0013 11 6 5.3356 -2.7193 0.0015 12 6 6.1806 -1.6188 -0.0054 13 6 7.5494 -1.7991 -0.0002 14 6 8.0803 -3.0819 0.0010 15 7 9.4709 -3.2656 0.0011 16 7 10.4086 -2.5889 0.7981 17 6 11.5886 -3.0645 0.4808 18 8 12.7703 -2.6744 1.0256 19 7 11.4390 -3.9959 -0.4646 20 6 10.1700 -4.1306 -0.7574 21 6 9.5927 -5.0853 -1.7706 22 7 9.4033 -4.3869 -3.0491 23 6 7.2343 -4.1828 0.0025 24 6 5.8658 -4.0015 0.0022 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8745 -0.6807 -0.8904 28 1 5.7673 -0.6209 -0.0105 29 1 8.2069 -0.9423 -0.0014 30 1 13.0300 -3.1819 1.8066 31 1 10.2762 -5.9225 -1.9116 32 1 8.6320 -5.4565 -1.4137 33 1 9.0399 -5.0124 -3.7524 34 1 8.8048 -3.5824 -2.9365 35 1 7.6469 -5.1810 0.0038 36 1 5.2076 -4.8577 0.0029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168760607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:16 Heat of formation + Delta-G solvation = 56.529312 kcal Electronic energy + Delta-G solvation = -22044.925536 eV Core-core repulsion = 18532.566094 eV Total energy + Delta-G solvation = -3512.359442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.59620 -39.93055 -38.02204 -37.14319 -35.23852 -33.53766 -32.85940 -31.38456 -31.04012 -29.18446 -27.98682 -26.09552 -23.70709 -23.34529 -21.83746 -21.73629 -20.65759 -18.70821 -18.21374 -17.63277 -16.86068 -16.71348 -16.35492 -15.75833 -15.37462 -15.15211 -14.68227 -14.47230 -14.23327 -14.06292 -13.58833 -13.38073 -13.22388 -12.81005 -12.69631 -12.48639 -12.29884 -11.89057 -11.40754 -11.24776 -11.05231 -10.66076 -10.18115 -10.12949 -10.06979 -9.81812 -9.52545 -9.27286 -9.13156 -8.87605 -7.91169 -6.36390 -4.40091 0.74782 1.16961 1.50792 1.87003 2.39341 3.07922 3.12102 3.13705 3.16679 3.57752 3.79705 4.00720 4.12589 4.28039 4.43297 4.59124 4.73333 4.93757 5.00811 5.08703 5.13753 5.34474 5.36167 5.66919 5.80810 5.87008 5.90229 6.08092 6.20540 6.35465 6.46155 6.52229 6.54648 6.82465 6.94618 7.16761 7.20511 7.71985 7.75027 8.30322 8.71482 9.18245 10.75655 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.025996 B = 0.003385 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.847683 B = 8268.915092 C = 8836.958942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.165 3.835 10 O -0.294 6.294 11 C 0.167 3.833 12 C -0.201 4.201 13 C -0.050 4.050 14 C 0.064 3.936 15 N -0.300 5.300 16 N -0.306 5.306 17 C 0.394 3.606 18 O -0.439 6.439 19 N -0.532 5.532 20 C 0.300 3.700 21 C 0.136 3.864 22 N -0.839 5.839 23 C -0.079 4.079 24 C -0.147 4.147 25 H 0.271 0.729 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.406 0.594 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.357 0.643 34 H 0.347 0.653 35 H 0.134 0.866 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.498 -9.413 -1.357 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.106 0.894 9 C 0.092 3.908 10 O -0.205 6.205 11 C 0.118 3.882 12 C -0.220 4.220 13 C -0.069 4.069 14 C -0.027 4.027 15 N -0.087 5.087 16 N -0.146 5.146 17 C 0.075 3.925 18 O -0.238 6.238 19 N -0.269 5.269 20 C 0.025 3.975 21 C 0.003 3.997 22 N -0.372 5.372 23 C -0.099 4.099 24 C -0.166 4.166 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 19.224 -8.472 -1.337 21.051 hybrid contribution -0.489 0.733 0.597 1.065 sum 18.736 -7.739 -0.739 20.284 Atomic orbital electron populations 1.69835 1.06052 1.27621 1.48597 1.24694 0.94845 0.98721 0.94105 0.86913 0.80431 0.83720 0.79151 1.19495 1.20263 1.18947 1.20721 0.87169 0.95892 1.53350 0.89436 1.21128 0.96908 0.76641 0.96165 1.86221 1.15630 1.33653 1.84976 1.19445 0.85009 0.93460 0.90304 1.21370 0.92815 0.99869 1.07962 1.20783 0.94897 0.95302 0.95969 1.17195 0.77164 0.94896 1.13445 1.47153 1.05290 1.27903 1.28388 1.78405 0.98172 1.21592 1.16394 1.21107 0.85809 0.92189 0.93356 1.84924 1.30838 1.59678 1.48390 1.70255 1.16320 1.21761 1.18542 1.24125 0.86296 0.93161 0.93942 1.20398 0.99913 0.93023 0.86406 1.58530 1.58647 1.12773 1.07223 1.20718 0.92342 0.97115 0.99719 1.20283 0.93650 0.95878 1.06778 0.91861 0.95976 0.96417 0.84059 0.85060 0.73686 0.86956 0.91883 0.82832 0.83987 0.84870 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.96 55.43 0.77 -24.82 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 7 C -0.53 -14.54 9.99 -34.44 -0.34 -14.88 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 C 0.16 3.72 3.56 36.01 0.13 3.85 16 10 O -0.29 -6.07 10.12 -19.56 -0.20 -6.27 16 11 C 0.17 2.75 6.69 -39.21 -0.26 2.49 16 12 C -0.20 -3.09 9.03 -39.46 -0.36 -3.44 16 13 C -0.05 -0.69 9.89 -39.42 -0.39 -1.08 16 14 C 0.06 0.83 6.19 -83.55 -0.52 0.31 16 15 N -0.30 -4.04 3.70 -8.01 -0.03 -4.07 16 16 N -0.31 -4.62 12.61 29.19 0.37 -4.25 16 17 C 0.39 5.56 9.46 -91.19 -0.86 4.70 16 18 O -0.44 -4.98 13.66 -19.26 -0.26 -5.24 16 19 N -0.53 -7.48 11.21 -12.02 -0.13 -7.61 16 20 C 0.30 3.70 7.34 -155.43 -1.14 2.56 16 21 C 0.14 1.13 6.93 -4.97 -0.03 1.10 16 22 N -0.84 -6.95 9.60 -11.41 -0.11 -7.06 16 23 C -0.08 -0.88 8.57 -39.43 -0.34 -1.22 16 24 C -0.15 -1.91 9.98 -39.46 -0.39 -2.30 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.50 6.72 -51.93 -0.35 0.15 16 27 H 0.02 0.39 7.08 -51.93 -0.37 0.02 16 28 H 0.14 2.21 6.29 -52.48 -0.33 1.88 16 29 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.41 2.24 9.06 45.56 0.41 2.65 16 31 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.41 5.20 -51.93 -0.27 0.14 16 33 H 0.36 1.99 9.08 -39.29 -0.36 1.63 16 34 H 0.35 3.10 9.00 -39.29 -0.35 2.75 16 35 H 0.13 1.12 6.31 -52.49 -0.33 0.79 16 36 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -33.04 315.54 -6.92 -39.96 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -2.80 Total: 5.44 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -4.61 Total: -5.83 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.87 Total: -47.81 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.46 Total: -11.51 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.04 -6.92 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168760607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.488 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds