Wall clock time and date at job start Tue Mar 31 2020 03:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00555 * 2 1 4 4 H 1.48494 * 109.47458 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46743 * 300.00259 * 3 2 1 6 6 H 1.48492 * 109.47293 * 59.99797 * 3 2 1 7 7 C 1.38817 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99785 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46944 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.46802 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99682 * 180.02562 * 13 12 11 15 15 O 1.21523 * 120.00077 * 359.97438 * 14 13 12 16 16 C 1.48131 * 120.00200 * 179.97438 * 14 13 12 17 17 N 1.33469 * 125.32241 * 359.97188 * 16 14 13 18 18 C 1.32490 * 109.75662 * 180.02562 * 17 16 14 19 19 N 1.33984 * 132.35107 * 180.02562 * 18 17 16 20 20 C 1.31254 * 120.88697 * 180.02562 * 19 18 17 21 21 C 1.40177 * 120.35656 * 359.97438 * 20 19 18 22 22 C 1.35675 * 119.26762 * 0.27975 * 21 20 19 23 23 N 1.36172 * 119.03054 * 359.49508 * 22 21 20 24 24 N 1.31988 * 125.32490 * 180.02562 * 16 14 13 25 25 H 0.97008 * 119.99857 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00214 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.46900 * 59.99855 * 10 9 7 28 28 H 1.09004 * 109.46887 * 300.00331 * 10 9 7 29 29 H 1.09001 * 109.47176 * 59.99868 * 11 10 9 30 30 H 1.09003 * 109.46971 * 299.99988 * 11 10 9 31 31 H 1.08997 * 109.46776 * 59.99855 * 12 11 10 32 32 H 1.09004 * 109.46675 * 300.00020 * 12 11 10 33 33 H 0.96994 * 120.00390 * 359.97438 * 13 12 11 34 34 H 1.08001 * 119.82540 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.36242 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.48507 * 179.72538 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0578 -3.6569 0.0016 11 6 1.0635 -4.8197 0.0022 12 6 1.8285 -6.1448 0.0029 13 7 0.8764 -7.2582 0.0029 14 6 1.3255 -8.5289 0.0039 15 8 2.5203 -8.7511 0.0044 16 6 0.3629 -9.6548 0.0045 17 7 -0.9663 -9.5337 0.0046 18 6 -1.5255 -10.7348 0.0057 19 7 -2.8041 -11.1351 0.0058 20 6 -3.1105 -12.4114 0.0076 21 6 -2.0997 -13.3827 0.0089 22 6 -0.8014 -12.9888 0.0140 23 7 -0.5146 -11.6576 0.0074 24 7 0.6855 -10.9347 0.0060 25 1 -0.4850 0.8401 -0.0004 26 1 0.3554 -2.3881 0.0016 27 1 2.6852 -3.7142 0.8911 28 1 2.6839 -3.7150 -0.8889 29 1 0.4365 -4.7621 -0.8875 30 1 0.4372 -4.7617 0.8925 31 1 2.4551 -6.2021 0.8928 32 1 2.4551 -6.2030 -0.8871 33 1 -0.0773 -7.0809 0.0029 34 1 -4.1470 -12.7150 0.0081 35 1 -2.3517 -14.4329 0.0107 36 1 -0.0069 -13.7204 0.0196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168834368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:08 Heat of formation + Delta-G solvation = 89.958459 kcal Electronic energy + Delta-G solvation = -21016.193672 eV Core-core repulsion = 17537.576579 eV Total energy + Delta-G solvation = -3478.617094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.14177 -41.06283 -39.62154 -37.58182 -36.09884 -35.70901 -33.84455 -32.60958 -31.98915 -31.28988 -27.80976 -26.33816 -25.46184 -24.55919 -23.84026 -22.62190 -21.62470 -19.78690 -19.42542 -19.11343 -18.38365 -17.99838 -17.27519 -16.91290 -16.89261 -16.49693 -15.75914 -15.49540 -15.39717 -15.29341 -14.72253 -14.25877 -14.12042 -13.90793 -13.78034 -13.32801 -13.25957 -12.84610 -12.62722 -12.46263 -12.09516 -12.04559 -11.84665 -11.74962 -11.60131 -11.09121 -11.00027 -10.94926 -10.34048 -10.07594 -9.01107 -7.95781 -5.25108 -0.74315 -0.52229 0.54703 0.55283 1.48030 1.49131 1.56968 1.59724 1.87343 2.13280 2.31608 2.56252 2.85802 3.22025 3.38125 3.47249 3.71142 3.94604 4.06484 4.21586 4.26754 4.35547 4.41858 4.45442 4.67049 4.71104 4.77973 4.85169 4.95561 5.07977 5.22621 5.31415 5.31928 5.50113 6.04321 6.25889 6.27395 6.54359 6.78328 7.33047 8.08177 8.31486 9.28080 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.039138 B = 0.002215 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.253862 B =12637.317396 C =13326.820780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.748 5.748 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.132 3.868 13 N -0.687 5.687 14 C 0.610 3.390 15 O -0.542 6.542 16 C 0.226 3.774 17 N -0.531 5.531 18 C 0.425 3.575 19 N -0.488 5.488 20 C 0.220 3.780 21 C -0.175 4.175 22 C 0.141 3.859 23 N -0.330 5.330 24 N -0.297 5.297 25 H 0.252 0.748 26 H 0.375 0.625 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.420 0.580 34 H 0.244 0.756 35 H 0.238 0.762 36 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -35.848 0.043 36.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.271 4.271 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.391 5.391 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.009 3.991 13 N -0.338 5.338 14 C 0.390 3.610 15 O -0.417 6.417 16 C -0.058 4.058 17 N -0.267 5.267 18 C 0.065 3.935 19 N -0.205 5.205 20 C 0.037 3.963 21 C -0.198 4.198 22 C 0.007 3.993 23 N -0.111 5.111 24 N -0.133 5.133 25 H 0.061 0.939 26 H 0.207 0.793 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.258 0.742 34 H 0.260 0.740 35 H 0.254 0.746 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.913 -34.875 0.040 35.554 hybrid contribution 0.056 0.618 0.000 0.620 sum -6.857 -34.257 0.040 34.937 Atomic orbital electron populations 1.69825 1.06625 1.26097 1.59492 1.25628 0.96506 1.01286 1.03665 0.85025 0.78208 0.79536 0.76697 1.19006 1.21940 1.21932 1.19707 0.91634 0.85323 1.41195 0.90479 1.42573 1.05769 1.01234 1.89546 1.20675 0.93902 0.84407 0.98389 1.21728 0.98679 0.92070 1.03457 1.21369 0.91187 0.83191 1.03364 1.45708 1.12379 1.03893 1.71853 1.16410 0.85281 0.81647 0.77616 1.90827 1.15656 1.84560 1.50643 1.23904 0.90248 0.92754 0.98848 1.70680 1.05253 1.21478 1.29307 1.22867 0.87554 0.85769 0.97305 1.68247 1.10797 1.21997 1.19457 1.24798 1.04548 0.84645 0.82302 1.22806 0.88652 1.05983 1.02363 1.23276 1.01811 0.80793 0.93418 1.49097 1.06700 1.09499 1.45782 1.78745 1.00635 1.03804 1.30096 0.93934 0.79300 0.95524 0.95541 0.90740 0.90747 0.90392 0.90401 0.74205 0.74013 0.74568 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.25 -14.14 9.99 84.03 0.84 -13.31 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -38.98 5.60 -343.43 -1.92 -40.91 16 10 C 0.15 6.15 6.26 86.38 0.54 6.69 16 11 C -0.12 -3.81 5.44 30.60 0.17 -3.65 16 12 C 0.13 3.72 5.67 86.38 0.49 4.21 16 13 N -0.69 -19.15 5.55 -465.69 -2.59 -21.73 16 14 C 0.61 19.46 7.84 86.87 0.68 20.15 16 15 O -0.54 -20.13 17.07 -3.79 -0.06 -20.20 16 16 C 0.23 6.94 7.92 137.40 1.09 8.03 16 17 N -0.53 -15.69 10.89 -192.62 -2.10 -17.78 16 18 C 0.42 10.14 8.99 261.57 2.35 12.49 16 19 N -0.49 -8.20 10.48 -197.55 -2.07 -10.27 16 20 C 0.22 0.56 11.27 85.25 0.96 1.52 16 21 C -0.17 0.41 10.06 22.15 0.22 0.64 16 22 C 0.14 0.86 11.32 83.43 0.94 1.80 16 23 N -0.33 -6.62 3.91 -197.59 -0.77 -7.39 16 24 N -0.30 -8.47 12.78 -52.60 -0.67 -9.14 16 25 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 26 H 0.38 20.58 7.67 -92.71 -0.71 19.87 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.42 10.79 8.14 -92.71 -0.76 10.03 16 34 H 0.24 -1.97 8.06 -2.91 -0.02 -2.00 16 35 H 0.24 -3.31 8.06 -2.91 -0.02 -3.34 16 36 H 0.22 -0.22 8.06 -2.91 -0.02 -0.25 16 Total: -1.00 -88.64 325.46 0.55 -88.10 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -0.33 Total: 16.01 kcal Atomic # 6 Polarization: 25.65 SS G_CDS: 8.75 Total: 34.41 kcal Atomic # 7 Polarization: -157.55 SS G_CDS: -9.84 Total: -167.39 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.20 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -88.64 0.55 -88.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168834368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.055 kcal (2) G-P(sol) polarization free energy of solvation -88.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds