Wall clock time and date at job start Tue Mar 31 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00515 * 2 1 4 4 H 1.48498 * 109.47207 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47024 * 300.00213 * 3 2 1 6 6 H 1.48497 * 109.46857 * 59.99705 * 3 2 1 7 7 C 1.38816 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00141 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99742 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47146 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47200 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47197 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00225 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99623 * 0.02562 * 14 13 12 16 16 C 1.50690 * 120.00148 * 180.02562 * 14 13 12 17 17 H 1.09004 * 110.83584 * 303.71267 * 16 14 13 18 18 C 1.54712 * 110.93938 * 67.46152 * 16 14 13 19 19 O 1.43777 * 102.78129 * 92.87400 * 18 16 14 20 20 C 1.36127 * 109.23993 * 27.75848 * 19 18 16 21 21 C 1.39286 * 129.89073 * 161.56929 * 20 19 18 22 22 C 1.37930 * 120.24075 * 179.07580 * 21 20 19 23 23 C 1.38287 * 120.35338 * 359.97438 * 22 21 20 24 24 C 1.38350 * 119.76292 * 0.42627 * 23 22 21 25 25 C 1.37735 * 119.97912 * 359.43615 * 24 23 22 26 26 H 0.96997 * 119.99577 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00243 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.46771 * 60.00520 * 10 9 7 29 29 H 1.09003 * 109.47368 * 300.00560 * 10 9 7 30 30 H 1.09003 * 109.47371 * 59.99724 * 11 10 9 31 31 H 1.09003 * 109.47232 * 300.00383 * 11 10 9 32 32 H 1.09004 * 109.46827 * 60.00193 * 12 11 10 33 33 H 1.08997 * 109.47367 * 299.99857 * 12 11 10 34 34 H 0.97002 * 119.99693 * 0.02562 * 13 12 11 35 35 H 1.09000 * 110.74982 * 211.19872 * 18 16 14 36 36 H 1.08995 * 110.74853 * 334.36899 * 18 16 14 37 37 H 1.08003 * 119.88041 * 359.05208 * 21 20 19 38 38 H 1.08008 * 119.82317 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.11475 * 180.13925 * 23 22 21 40 40 H 1.08000 * 120.00751 * 179.72084 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0636 -4.8198 0.0022 12 6 1.8286 -6.1448 0.0029 13 7 0.8765 -7.2583 0.0041 14 6 1.3256 -8.5290 0.0043 15 8 2.5181 -8.7507 0.0040 16 6 0.3463 -9.6743 0.0050 17 1 -0.3351 -9.6013 0.8527 18 6 -0.4344 -9.7350 -1.3293 19 8 0.3526 -10.6444 -2.1172 20 6 1.0063 -11.5051 -1.2896 21 6 1.5915 -12.7386 -1.5653 22 6 2.2273 -13.4448 -0.5655 23 6 2.2901 -12.9353 0.7185 24 6 1.7041 -11.7146 1.0025 25 6 1.0712 -11.0064 0.0051 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0016 28 1 2.6852 -3.7143 0.8912 29 1 2.6840 -3.7151 -0.8888 30 1 0.4366 -4.7622 -0.8875 31 1 0.4373 -4.7618 0.8924 32 1 2.4552 -6.2021 0.8929 33 1 2.4551 -6.2031 -0.8871 34 1 -0.0772 -7.0809 0.0040 35 1 -1.4382 -10.1296 -1.1717 36 1 -0.4767 -8.7514 -1.7970 37 1 1.5470 -13.1437 -2.5654 38 1 2.6784 -14.4009 -0.7867 39 1 2.7908 -13.4905 1.4979 40 1 1.7469 -11.3151 2.0050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177418913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:06 Heat of formation + Delta-G solvation = -56.855586 kcal Electronic energy + Delta-G solvation = -21802.356982 eV Core-core repulsion = 18388.621145 eV Total energy + Delta-G solvation = -3413.735836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.49645 -40.30139 -38.34516 -37.53413 -35.94920 -34.14772 -33.55354 -31.45505 -30.99123 -30.13333 -27.11700 -25.32425 -24.34259 -23.42849 -22.87240 -22.60427 -21.26412 -19.28265 -18.73131 -17.95605 -17.72944 -17.27016 -16.88968 -16.68107 -16.39730 -16.30161 -15.48452 -15.32207 -15.21021 -14.91953 -14.54858 -14.37850 -13.99264 -13.93513 -13.52051 -13.32331 -12.87118 -12.76000 -12.65591 -12.57610 -12.44891 -12.18660 -12.07062 -12.04788 -11.82148 -11.74895 -11.02587 -10.97093 -10.18734 -9.88345 -9.15971 -9.03374 -7.98226 -5.27279 0.28439 0.41730 1.45235 1.47306 1.47691 1.58138 2.03641 2.28189 2.54883 2.79866 3.14861 3.35805 3.49988 3.73302 3.76598 3.86780 4.05934 4.17684 4.22023 4.26472 4.36634 4.42913 4.47109 4.50995 4.60153 4.67850 4.70698 4.71264 4.85622 5.05187 5.24945 5.29705 5.34306 5.36591 5.43311 5.47901 5.54382 5.64957 6.17989 6.24956 6.46872 7.14302 7.31422 8.05697 8.29841 9.25403 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044826 B = 0.002279 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.480713 B =12282.999190 C =12539.064737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.134 3.866 13 N -0.712 5.712 14 C 0.518 3.482 15 O -0.575 6.575 16 C -0.096 4.096 17 H 0.158 0.842 18 C 0.060 3.940 19 O -0.324 6.324 20 C 0.085 3.915 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.153 4.153 24 C -0.070 4.070 25 C -0.170 4.170 26 H 0.253 0.747 27 H 0.376 0.624 28 H 0.021 0.979 29 H 0.020 0.980 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -29.041 0.721 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.155 4.155 12 C 0.009 3.991 13 N -0.365 5.365 14 C 0.305 3.695 15 O -0.454 6.454 16 C -0.117 4.117 17 H 0.175 0.825 18 C -0.014 4.014 19 O -0.239 6.239 20 C 0.041 3.959 21 C -0.174 4.174 22 C -0.100 4.100 23 C -0.171 4.171 24 C -0.088 4.088 25 C -0.171 4.171 26 H 0.061 0.939 27 H 0.209 0.791 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.256 0.744 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.584 -29.055 0.476 29.102 hybrid contribution -0.301 1.505 0.076 1.537 sum -1.884 -27.550 0.551 27.620 Atomic orbital electron populations 1.69807 1.06509 1.26144 1.59364 1.25589 0.96510 1.01147 1.03540 0.85058 0.78157 0.79654 0.76796 1.19227 1.21850 1.21817 1.19670 0.91531 0.85426 1.41410 0.90809 1.42541 1.05764 1.01127 1.89530 1.20682 0.94149 0.84858 0.97895 1.21693 0.98430 0.91890 1.03502 1.21088 0.91742 0.84487 1.01776 1.45869 1.11410 1.04668 1.74541 1.20702 0.89227 0.84246 0.75352 1.90715 1.18805 1.85259 1.50600 1.21644 0.96872 0.89842 1.03369 0.82484 1.24121 0.95081 0.95010 0.87236 1.86804 1.59945 1.43836 1.33312 1.19896 0.95218 0.91729 0.89102 1.20595 1.02893 0.92070 1.01872 1.21276 0.96420 1.00282 0.91981 1.21408 1.01429 0.96273 0.97997 1.20594 0.94960 0.94459 0.98769 1.20429 1.05810 0.95709 0.95137 0.93864 0.79145 0.96056 0.96217 0.90533 0.90402 0.91990 0.92375 0.74438 0.85887 0.86175 0.84367 0.82196 0.82956 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.75 -37.68 5.60 -343.43 -1.92 -39.61 16 10 C 0.15 5.90 6.26 86.38 0.54 6.44 16 11 C -0.12 -3.32 5.44 30.59 0.17 -3.15 16 12 C 0.13 3.44 5.67 86.38 0.49 3.93 16 13 N -0.71 -14.41 5.48 -463.06 -2.54 -16.95 16 14 C 0.52 12.48 7.08 87.65 0.62 13.10 16 15 O -0.57 -19.71 16.14 -3.05 -0.05 -19.76 16 16 C -0.10 -1.63 3.52 -11.40 -0.04 -1.67 16 17 H 0.16 1.49 8.14 -2.38 -0.02 1.48 16 18 C 0.06 0.86 7.54 72.57 0.55 1.41 16 19 O -0.32 -7.40 11.10 -95.00 -1.05 -8.45 16 20 C 0.09 1.95 7.04 22.68 0.16 2.11 16 21 C -0.16 -2.98 10.06 22.45 0.23 -2.76 16 22 C -0.08 -1.24 10.02 22.21 0.22 -1.02 16 23 C -0.15 -2.41 10.07 22.31 0.22 -2.19 16 24 C -0.07 -1.34 10.03 22.18 0.22 -1.12 16 25 C -0.17 -3.63 4.93 -19.53 -0.10 -3.72 16 26 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.38 19.76 7.67 -92.71 -0.71 19.05 16 28 H 0.02 0.84 8.14 -2.38 -0.02 0.83 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.42 5.52 8.47 -92.71 -0.79 4.73 16 35 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.12 1.43 7.86 -2.39 -0.02 1.41 16 37 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -77.01 342.92 0.90 -76.12 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.44 Total: 24.55 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 4.59 Total: -5.64 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.18 Total: -114.95 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.10 Total: -28.21 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.01 0.90 -76.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177418913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.261 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds