Wall clock time and date at job start Tue Mar 31 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42102 * 110.54515 * 2 1 4 4 O 1.42100 * 110.54232 * 223.24211 * 2 1 3 5 5 N 1.65602 * 104.44835 * 111.62118 * 2 1 3 6 6 C 1.47588 * 134.49255 * 89.99979 * 5 2 1 7 7 C 1.53939 * 86.11490 * 155.35943 * 6 5 2 8 8 C 1.53006 * 113.74007 * 137.95564 * 7 6 5 9 9 N 1.46504 * 109.46883 * 174.99955 * 8 7 6 10 10 C 1.34775 * 119.99531 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00300 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47126 * 180.02562 * 12 10 9 14 14 C 1.50690 * 109.47292 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99710 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00510 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99589 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00335 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47182 * 90.00062 * 18 16 14 20 20 H 1.48500 * 109.46728 * 210.00122 * 18 16 14 21 21 H 1.48498 * 109.46997 * 329.99816 * 18 16 14 22 22 C 1.47580 * 134.49272 * 269.99615 * 5 2 1 23 23 H 1.09007 * 109.46828 * 308.37992 * 1 2 3 24 24 H 1.08997 * 109.46574 * 68.37456 * 1 2 3 25 25 H 1.08995 * 109.47185 * 188.38068 * 1 2 3 26 26 H 1.09003 * 113.76693 * 41.05530 * 6 5 2 27 27 H 1.08998 * 113.76396 * 269.66254 * 6 5 2 28 28 H 1.09005 * 113.74232 * 269.15116 * 7 6 5 29 29 H 1.09001 * 109.47002 * 294.99452 * 8 7 6 30 30 H 1.08993 * 109.46955 * 54.99889 * 8 7 6 31 31 H 0.96992 * 119.99966 * 359.97438 * 9 8 7 32 32 H 1.08998 * 109.47224 * 299.99707 * 12 10 9 33 33 H 1.08993 * 109.47046 * 60.00641 * 12 10 9 34 34 H 1.09001 * 109.46998 * 300.00313 * 13 12 10 35 35 H 1.08996 * 109.46884 * 59.99429 * 13 12 10 36 36 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 37 37 H 1.09012 * 113.76784 * 90.34263 * 22 5 2 38 38 H 1.08992 * 113.77167 * 318.94818 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3128 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2273 -0.5909 1.4908 6 6 2.4853 -1.9387 2.0340 7 6 3.3356 -1.2304 3.1041 8 6 3.1412 -1.7896 4.5149 9 7 4.0756 -1.1339 5.4332 10 6 4.0845 -1.4691 6.7385 11 8 3.3193 -2.3139 7.1529 12 6 5.0460 -0.7950 7.6831 13 6 4.8515 -1.3541 9.0939 14 6 5.8125 -0.6797 10.0385 15 1 6.4943 0.0723 9.6694 16 6 5.8216 -1.0224 11.3740 17 7 4.9911 -1.9378 11.8235 18 14 7.0125 -0.1858 12.5450 19 1 6.3747 1.0274 13.1163 20 1 7.3676 -1.1216 13.6420 21 1 8.2418 0.2017 11.8076 22 6 2.4854 0.0187 2.8098 23 1 -0.3633 0.6381 0.8057 24 1 -0.3632 0.3787 -0.9553 25 1 -0.3633 -1.0166 0.1498 26 1 3.0627 -2.5782 1.3664 27 1 1.5972 -2.4292 2.4324 28 1 4.3853 -1.1233 2.8304 29 1 2.1185 -1.6023 4.8422 30 1 3.3302 -2.8630 4.5095 31 1 4.6878 -0.4585 5.1017 32 1 6.0686 -0.9830 7.3560 33 1 4.8577 0.2785 7.6882 34 1 3.8289 -1.1665 9.4213 35 1 5.0399 -2.4277 9.0884 36 1 4.9978 -2.1792 12.7629 37 1 1.5972 0.1032 3.4362 38 1 3.0627 0.9419 2.7617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261212735.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:33 Heat of formation + Delta-G solvation = -82.436905 kcal Electronic energy + Delta-G solvation = -20423.984104 eV Core-core repulsion = 17008.749836 eV Total energy + Delta-G solvation = -3415.234269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04252 -38.81462 -37.47088 -36.33294 -34.44839 -33.44511 -31.15495 -30.09072 -29.66361 -26.67158 -26.24708 -24.64802 -21.54588 -20.91652 -19.50460 -19.14542 -18.01341 -17.04934 -16.71292 -16.54705 -16.20627 -15.60249 -15.37548 -14.79892 -14.48359 -14.33614 -13.97173 -13.74691 -13.61632 -13.24431 -13.06890 -12.95632 -12.50129 -12.41938 -12.21466 -12.18271 -11.82179 -11.55394 -11.28507 -11.14454 -11.02637 -10.92189 -10.59425 -9.95805 -9.67112 -9.54755 -9.18499 -9.01514 -8.81868 -8.32095 -5.96401 -4.00666 -0.20568 2.09285 3.24202 3.33313 3.37364 3.40206 3.42895 3.46503 3.59559 4.03570 4.13965 4.37095 4.37895 4.47735 4.50756 4.88982 5.02164 5.08602 5.17118 5.21745 5.38666 5.40045 5.43346 5.55370 5.73916 5.94447 6.00839 6.23071 6.24559 6.68614 6.89577 7.74252 7.85941 7.86138 8.07037 8.38651 8.76528 9.08111 9.62949 11.14565 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.047594 B = 0.002310 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.165170 B =12120.082406 C =12364.595459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.678 4.678 2 S 2.629 3.371 3 O -0.952 6.952 4 O -0.953 6.953 5 N -1.038 6.038 6 C 0.133 3.867 7 C -0.129 4.129 8 C 0.127 3.873 9 N -0.745 5.745 10 C 0.510 3.490 11 O -0.535 6.535 12 C -0.131 4.131 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.127 3.873 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.398 0.602 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.089 0.911 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 3.399 -24.683 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.827 4.827 2 S 2.723 3.277 3 O -0.943 6.943 4 O -0.944 6.944 5 N -0.877 5.877 6 C 0.007 3.993 7 C -0.150 4.150 8 C 0.002 3.998 9 N -0.400 5.400 10 C 0.298 3.702 11 O -0.410 6.410 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.002 3.998 23 H 0.145 0.855 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.700 3.033 -25.119 26.755 hybrid contribution 0.029 0.672 0.709 0.978 sum -8.671 3.705 -24.409 26.167 Atomic orbital electron populations 1.30637 1.29312 1.11454 1.11283 1.04386 0.77224 0.73822 0.72238 1.93614 1.77630 1.37585 1.85467 1.93608 1.77662 1.61943 1.61195 1.60310 1.84702 1.18161 1.24514 1.22781 0.98607 0.84484 0.93432 1.23455 1.00912 0.96201 0.94408 1.21244 0.94328 0.97710 0.86567 1.46194 1.40771 1.44144 1.08847 1.21564 0.84417 0.82367 0.81834 1.90672 1.41022 1.32597 1.76757 1.21866 0.97066 1.00380 0.97735 1.18896 0.97611 0.96689 0.86893 1.21228 1.19796 1.22226 0.93274 0.92602 1.25030 0.95827 0.95173 0.98405 1.69998 1.36948 1.31059 1.14876 0.86587 0.81347 0.79258 0.80725 1.20688 1.21245 1.19889 1.22969 0.98696 0.97758 0.80421 0.85475 0.85584 0.85502 0.89059 0.89265 0.87092 0.91305 0.91105 0.76789 0.90227 0.90225 0.95861 0.95844 0.92960 0.89310 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -2.70 10.99 101.05 1.11 -1.59 16 2 S 2.63 19.58 6.57 -107.50 -0.71 18.88 16 3 O -0.95 -10.56 18.02 -57.54 -1.04 -11.59 16 4 O -0.95 -10.37 18.02 -57.54 -1.04 -11.40 16 5 N -1.04 -6.93 3.99 -118.76 -0.47 -7.41 16 6 C 0.13 0.77 8.48 -2.97 -0.03 0.74 16 7 C -0.13 -0.85 3.94 -89.70 -0.35 -1.20 16 8 C 0.13 1.21 5.53 -4.04 -0.02 1.19 16 9 N -0.74 -8.94 5.56 -60.29 -0.33 -9.27 16 10 C 0.51 9.13 7.83 -10.98 -0.09 9.04 16 11 O -0.54 -12.00 15.98 5.56 0.09 -11.91 16 12 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 13 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 14 C -0.53 -14.77 9.11 -34.45 -0.31 -15.08 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 C 0.13 0.79 8.47 -2.98 -0.03 0.77 16 23 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 24 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.36 8.10 -51.93 -0.42 -0.06 16 28 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.40 3.62 8.47 -40.82 -0.35 3.27 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.09 0.45 7.89 -51.92 -0.41 0.04 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -39.30 339.83 -8.52 -47.82 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -5.77 Total: -3.80 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.09 Total: -6.42 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.07 Total: -43.18 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.99 Total: -34.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 19.58 SS G_CDS: -0.71 Total: 18.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -39.30 -8.52 -47.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261212735.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.612 kcal (2) G-P(sol) polarization free energy of solvation -39.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds