Wall clock time and date at job start Tue Mar 31 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99595 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99843 * 179.97438 * 10 9 7 13 13 C 1.47249 * 135.90457 * 359.63069 * 12 10 9 14 14 C 1.52868 * 87.60413 * 153.81066 * 13 12 10 15 15 C 1.52086 * 129.76115 * 164.46325 * 14 13 12 16 16 C 1.52086 * 129.98280 * 246.49597 * 14 13 12 17 17 H 1.09009 * 117.52249 * 133.60503 * 16 14 13 18 18 C 1.50705 * 117.52592 * 348.49883 * 16 14 13 19 19 O 1.21279 * 119.99369 * 359.97438 * 18 16 14 20 20 N 1.34772 * 119.99840 * 180.02562 * 18 16 14 21 21 C 1.46978 * 127.26031 * 359.67466 * 20 18 16 22 22 C 1.50586 * 107.14005 * 179.91695 * 21 20 18 23 23 C 1.30391 * 110.11553 * 0.37213 * 22 21 20 24 24 C 1.46985 * 127.24795 * 180.02562 * 20 18 16 25 25 C 1.47254 * 135.89588 * 179.97438 * 12 10 9 26 26 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 27 27 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 28 28 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 29 29 H 1.08995 * 113.51238 * 268.47444 * 13 12 10 30 30 H 1.09000 * 113.51656 * 39.05746 * 13 12 10 31 31 H 1.08996 * 117.52433 * 226.73216 * 15 14 13 32 32 H 1.09007 * 117.52509 * 11.89146 * 15 14 13 33 33 H 1.09005 * 109.90814 * 299.42287 * 21 20 18 34 34 H 1.09004 * 109.89972 * 60.66566 * 21 20 18 35 35 H 1.07995 * 124.94156 * 180.15018 * 22 21 20 36 36 H 1.08001 * 124.94577 * 179.79825 * 23 22 21 37 37 H 1.08998 * 109.90470 * 299.33067 * 24 20 18 38 38 H 1.08999 * 109.90997 * 60.58313 * 24 20 18 39 39 H 1.08999 * 113.51563 * 320.94137 * 25 12 10 40 40 H 1.09005 * 113.51071 * 91.53355 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 8 3.4226 -3.4230 -0.0166 12 7 1.7809 -4.9153 -0.0127 13 6 0.4624 -5.5707 -0.0019 14 6 1.1227 -6.7668 -0.6876 15 6 0.6181 -8.1915 -0.8570 16 6 0.9170 -7.3274 -2.0863 17 1 1.8066 -7.5695 -2.6679 18 6 -0.2568 -6.8110 -2.8780 19 8 -0.9954 -5.9794 -2.3946 20 7 -0.4862 -7.2741 -4.1227 21 6 0.3032 -8.2700 -4.8612 22 6 -0.3553 -8.4518 -6.2032 23 6 -1.4001 -7.6775 -6.2986 24 6 -1.5746 -6.8843 -5.0304 25 6 2.3946 -6.2539 -0.0182 26 1 -0.4849 0.8401 0.0041 27 1 0.6280 -2.5591 0.8866 28 1 0.6206 -2.5548 -0.8933 29 1 0.0951 -5.7922 1.0001 30 1 -0.2789 -5.0668 -0.6220 31 1 1.3111 -9.0016 -0.6301 32 1 -0.4280 -8.3868 -0.6208 33 1 1.3242 -7.9113 -4.9922 34 1 0.3063 -9.2163 -4.3202 35 1 -0.0101 -9.1229 -6.9757 36 1 -2.0465 -7.6143 -7.1615 37 1 -2.5377 -7.1176 -4.5766 38 1 -1.5126 -5.8181 -5.2480 39 1 3.2784 -6.3245 -0.6522 40 1 2.5560 -6.6624 0.9794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269025242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:09 Heat of formation + Delta-G solvation = 36.056549 kcal Electronic energy + Delta-G solvation = -22658.295109 eV Core-core repulsion = 19248.588246 eV Total energy + Delta-G solvation = -3409.706864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85527 -39.73412 -38.03504 -37.05927 -34.40260 -32.83678 -32.21765 -29.35393 -29.04592 -27.03997 -25.76149 -25.40140 -23.15293 -22.98961 -20.15176 -19.95758 -18.82154 -18.10103 -17.61488 -16.37261 -16.26656 -15.75013 -15.64056 -15.28357 -14.83145 -14.70674 -14.33939 -13.95292 -13.53077 -13.29942 -13.18500 -13.11303 -12.77934 -12.56932 -12.24865 -12.07050 -11.83931 -11.73047 -11.14482 -10.91704 -10.67709 -10.56713 -10.50856 -10.22288 -10.02532 -9.88245 -9.73830 -9.15803 -8.64611 -8.56878 -8.36666 -8.06059 -5.97323 -3.97163 1.69984 2.35834 2.60887 3.38267 3.38502 3.45052 3.54444 3.63683 3.90635 3.96481 4.23697 4.29077 4.39977 4.54474 4.68117 4.82880 5.00267 5.12697 5.23309 5.29290 5.35777 5.39293 5.40165 5.41706 5.54086 5.60241 5.66447 5.74765 5.87295 5.90276 5.93933 6.06049 6.28611 6.34468 6.74756 7.29858 7.33771 7.45698 8.04011 8.05518 8.23666 8.56072 9.13337 9.28983 9.67036 11.15053 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.003803 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.460637 B = 7360.986549 C = 8323.240152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.014 3.986 10 C 0.548 3.452 11 O -0.546 6.546 12 N -0.655 5.655 13 C 0.140 3.860 14 C -0.145 4.145 15 C -0.123 4.123 16 C -0.152 4.152 17 H 0.126 0.874 18 C 0.567 3.433 19 O -0.517 6.517 20 N -0.622 5.622 21 C 0.124 3.876 22 C -0.174 4.174 23 C -0.162 4.162 24 C 0.126 3.874 25 C 0.141 3.859 26 H 0.260 0.740 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 -23.833 -10.054 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.093 0.907 9 C -0.025 4.025 10 C 0.342 3.658 11 O -0.422 6.422 12 N -0.393 5.393 13 C 0.017 3.983 14 C -0.147 4.147 15 C -0.161 4.161 16 C -0.173 4.173 17 H 0.143 0.857 18 C 0.356 3.644 19 O -0.391 6.391 20 N -0.358 5.358 21 C 0.001 3.999 22 C -0.192 4.192 23 C -0.180 4.180 24 C 0.004 3.996 25 C 0.018 3.982 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.143 -22.785 -9.662 24.948 hybrid contribution 0.346 0.719 -0.287 0.848 sum -2.797 -22.066 -9.950 24.366 Atomic orbital electron populations 1.69994 1.06023 1.26696 1.51157 1.25019 0.94908 0.99432 0.95292 0.86378 0.80311 0.83023 0.77432 1.19484 1.21022 1.20994 1.21227 0.94246 0.89112 1.50046 0.90679 1.19186 0.93986 0.89798 0.99560 1.21749 0.90673 0.80873 0.72522 1.90537 1.18117 1.83252 1.50284 1.49930 1.09204 1.03946 1.76225 1.22460 0.88385 0.88037 0.99459 1.22165 1.00674 0.95456 0.96370 1.22799 1.03003 0.93241 0.97086 1.21915 0.98697 1.06247 0.90452 0.85663 1.19234 0.85242 0.80863 0.79046 1.90736 1.48330 1.31692 1.68361 1.48123 1.29894 1.43199 1.14604 1.20826 0.95747 0.92576 0.90780 1.23258 0.97537 1.00836 0.97539 1.23344 0.98949 0.97468 0.98253 1.20742 0.91336 0.99707 0.87864 1.22224 0.94390 0.82460 0.99174 0.92999 0.93528 0.93356 0.89834 0.87916 0.87151 0.87676 0.90330 0.90205 0.83656 0.83624 0.90262 0.90103 0.90948 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.29 55.43 0.74 -27.02 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 23.03 29.54 -169.99 -5.02 18.01 16 4 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.51 -15.68 8.92 -34.44 -0.31 -15.98 16 8 H 0.08 2.40 6.75 -52.49 -0.35 2.05 16 9 C 0.01 0.39 5.28 -29.04 -0.15 0.23 16 10 C 0.55 14.00 8.07 -10.99 -0.09 13.92 16 11 O -0.55 -15.52 16.23 5.56 0.09 -15.43 16 12 N -0.65 -13.15 3.69 -184.33 -0.68 -13.83 16 13 C 0.14 2.32 8.02 -7.50 -0.06 2.26 16 14 C -0.15 -1.89 3.14 -155.72 -0.49 -2.38 16 15 C -0.12 -1.10 10.24 -27.09 -0.28 -1.38 16 16 C -0.15 -1.73 5.60 -92.13 -0.52 -2.25 16 17 H 0.13 1.18 7.88 -51.92 -0.41 0.77 16 18 C 0.57 7.90 7.68 -10.98 -0.08 7.81 16 19 O -0.52 -9.32 14.69 5.56 0.08 -9.24 16 20 N -0.62 -6.97 3.37 -175.77 -0.59 -7.56 16 21 C 0.12 0.92 6.47 -4.99 -0.03 0.89 16 22 C -0.17 -1.06 10.87 -35.91 -0.39 -1.45 16 23 C -0.16 -1.12 10.87 -35.91 -0.39 -1.51 16 24 C 0.13 1.27 7.00 -4.98 -0.03 1.23 16 25 C 0.14 2.09 8.62 -7.63 -0.07 2.02 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.97 6.01 -51.93 -0.31 1.66 16 31 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 342.98 15.07 5.17 5.17 Total: -1.00 -38.11 342.98 -8.91 -47.02 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.71 Total: -2.06 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.99 Total: 4.94 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.54 Total: -48.41 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.17 Total: -24.67 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -38.11 -8.91 -47.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.072 kcal (2) G-P(sol) polarization free energy of solvation -38.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds