Wall clock time and date at job start Tue Mar 31 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99595 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99843 * 179.97438 * 10 9 7 13 13 C 1.47249 * 135.90457 * 359.63069 * 12 10 9 14 14 C 1.52868 * 87.60413 * 153.81066 * 13 12 10 15 15 C 1.52086 * 129.76115 * 164.46325 * 14 13 12 16 16 C 1.52086 * 129.98280 * 246.49597 * 14 13 12 17 17 H 1.09009 * 117.52249 * 133.60503 * 16 14 13 18 18 C 1.50705 * 117.52592 * 348.49883 * 16 14 13 19 19 O 1.21279 * 119.99369 * 359.97438 * 18 16 14 20 20 N 1.34772 * 119.99840 * 180.02562 * 18 16 14 21 21 C 1.46978 * 127.26031 * 359.67466 * 20 18 16 22 22 C 1.50586 * 107.14005 * 179.91695 * 21 20 18 23 23 C 1.30391 * 110.11553 * 0.37213 * 22 21 20 24 24 C 1.46985 * 127.24795 * 180.02562 * 20 18 16 25 25 C 1.47254 * 135.89588 * 179.97438 * 12 10 9 26 26 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 27 27 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 28 28 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 29 29 H 1.08995 * 113.51238 * 268.47444 * 13 12 10 30 30 H 1.09000 * 113.51656 * 39.05746 * 13 12 10 31 31 H 1.08996 * 117.52433 * 226.73216 * 15 14 13 32 32 H 1.09007 * 117.52509 * 11.89146 * 15 14 13 33 33 H 1.09005 * 109.90814 * 299.42287 * 21 20 18 34 34 H 1.09004 * 109.89972 * 60.66566 * 21 20 18 35 35 H 1.07995 * 124.94156 * 180.15018 * 22 21 20 36 36 H 1.08001 * 124.94577 * 179.79825 * 23 22 21 37 37 H 1.08998 * 109.90470 * 299.33067 * 24 20 18 38 38 H 1.08999 * 109.90997 * 60.58313 * 24 20 18 39 39 H 1.08999 * 113.51563 * 320.94137 * 25 12 10 40 40 H 1.09005 * 113.51071 * 91.53355 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 8 3.4226 -3.4230 -0.0166 12 7 1.7809 -4.9153 -0.0127 13 6 0.4624 -5.5707 -0.0019 14 6 1.1227 -6.7668 -0.6876 15 6 0.6181 -8.1915 -0.8570 16 6 0.9170 -7.3274 -2.0863 17 1 1.8066 -7.5695 -2.6679 18 6 -0.2568 -6.8110 -2.8780 19 8 -0.9954 -5.9794 -2.3946 20 7 -0.4862 -7.2741 -4.1227 21 6 0.3032 -8.2700 -4.8612 22 6 -0.3553 -8.4518 -6.2032 23 6 -1.4001 -7.6775 -6.2986 24 6 -1.5746 -6.8843 -5.0304 25 6 2.3946 -6.2539 -0.0182 26 1 -0.4849 0.8401 0.0041 27 1 0.6280 -2.5591 0.8866 28 1 0.6206 -2.5548 -0.8933 29 1 0.0951 -5.7922 1.0001 30 1 -0.2789 -5.0668 -0.6220 31 1 1.3111 -9.0016 -0.6301 32 1 -0.4280 -8.3868 -0.6208 33 1 1.3242 -7.9113 -4.9922 34 1 0.3063 -9.2163 -4.3202 35 1 -0.0101 -9.1229 -6.9757 36 1 -2.0465 -7.6143 -7.1615 37 1 -2.5377 -7.1176 -4.5766 38 1 -1.5126 -5.8181 -5.2480 39 1 3.2784 -6.3245 -0.6522 40 1 2.5560 -6.6624 0.9794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269025242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:08 Heat of formation + Delta-G solvation = 9.174338 kcal Electronic energy + Delta-G solvation = -22659.460809 eV Core-core repulsion = 19248.588246 eV Total energy + Delta-G solvation = -3410.872564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.95473 -40.86493 -39.41775 -38.44854 -35.62710 -35.17313 -33.01611 -31.44709 -29.78672 -28.74598 -27.09283 -26.31588 -25.19060 -23.84301 -21.18763 -20.64672 -20.24356 -19.23966 -18.67159 -18.49944 -17.58281 -17.10667 -16.99426 -16.82274 -16.39551 -15.86547 -15.55436 -15.21303 -15.06092 -14.58389 -14.39583 -14.12351 -13.94180 -13.83337 -13.38478 -13.32042 -13.26513 -13.09832 -12.79609 -12.64618 -12.31521 -12.09359 -11.95273 -11.62020 -11.47863 -11.25500 -10.93748 -10.70102 -10.69766 -10.47104 -9.66936 -9.41306 -8.30698 -6.41161 1.20099 1.35060 1.35438 1.36809 1.52353 1.74537 1.76561 1.92501 2.38817 2.77217 3.02228 3.03210 3.35447 3.56253 3.68268 3.82861 3.94573 3.97786 4.33581 4.39012 4.45911 4.48821 4.50796 4.59139 4.61143 4.65088 4.74799 4.82652 4.88550 4.91737 4.94822 5.03778 5.13461 5.14485 5.19048 5.40247 5.66215 5.80221 6.00383 6.41473 6.65744 6.78605 7.05192 7.26086 7.36391 8.82404 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.003803 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.460637 B = 7360.986549 C = 8323.240152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.021 3.979 10 C 0.546 3.454 11 O -0.585 6.585 12 N -0.661 5.661 13 C 0.130 3.870 14 C -0.156 4.156 15 C -0.072 4.072 16 C -0.158 4.158 17 H 0.152 0.848 18 C 0.553 3.447 19 O -0.576 6.576 20 N -0.624 5.624 21 C 0.112 3.888 22 C -0.156 4.156 23 C -0.174 4.174 24 C 0.115 3.885 25 C 0.145 3.855 26 H 0.269 0.731 27 H 0.033 0.967 28 H 0.022 0.978 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 -26.774 -10.795 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.019 4.019 10 C 0.338 3.662 11 O -0.466 6.466 12 N -0.397 5.397 13 C 0.008 3.992 14 C -0.158 4.158 15 C -0.110 4.110 16 C -0.178 4.178 17 H 0.170 0.830 18 C 0.344 3.656 19 O -0.455 6.455 20 N -0.358 5.358 21 C -0.010 4.010 22 C -0.174 4.174 23 C -0.192 4.192 24 C -0.007 4.007 25 C 0.024 3.976 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.174 0.826 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.197 0.803 36 H 0.186 0.814 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.098 -25.830 -10.440 27.938 hybrid contribution -0.105 1.520 -0.105 1.528 sum -2.202 -24.309 -10.545 26.589 Atomic orbital electron populations 1.70094 1.07521 1.28239 1.50841 1.25968 0.95932 1.03286 0.94080 0.85257 0.78528 0.77931 0.78465 1.19577 1.19541 1.19199 1.21402 0.93719 0.90968 1.51748 0.92340 1.18924 0.94065 0.91269 0.97623 1.20954 0.89369 0.82532 0.73300 1.90487 1.18896 1.84509 1.52672 1.49803 1.12147 1.04204 1.73573 1.22683 0.86452 0.89248 1.00828 1.21882 0.98364 0.97329 0.98208 1.23039 1.04153 0.91127 0.92643 1.22121 0.98601 1.06731 0.90378 0.83022 1.19822 0.85544 0.80363 0.79914 1.90720 1.50514 1.34365 1.69945 1.48265 1.30280 1.43214 1.14070 1.21195 0.95691 0.92574 0.91503 1.23583 0.96279 1.00236 0.97275 1.23372 1.00556 0.97847 0.97435 1.20845 0.91117 0.99109 0.89636 1.22541 0.95081 0.78649 1.01313 0.92254 0.94898 0.95957 0.87544 0.91381 0.82598 0.87216 0.89357 0.87588 0.80264 0.81410 0.91106 0.92720 0.90584 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.90 13.29 21.45 0.28 -58.61 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.97 48.09 29.54 68.60 2.03 50.12 16 4 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -35.00 8.92 25.60 0.23 -34.77 16 8 H 0.06 3.92 6.75 -2.91 -0.02 3.90 16 9 C 0.02 1.24 5.28 29.10 0.15 1.39 16 10 C 0.55 29.35 8.07 87.66 0.71 30.06 16 11 O -0.59 -34.67 16.23 -3.03 -0.05 -34.72 16 12 N -0.66 -27.22 3.69 -855.49 -3.16 -30.37 16 13 C 0.13 4.42 8.02 83.73 0.67 5.09 16 14 C -0.16 -3.78 3.14 -52.96 -0.17 -3.94 16 15 C -0.07 -0.97 10.24 30.36 0.31 -0.65 16 16 C -0.16 -3.21 5.60 -11.77 -0.07 -3.27 16 17 H 0.15 2.28 7.88 -2.38 -0.02 2.26 16 18 C 0.55 15.49 7.68 87.66 0.67 16.16 16 19 O -0.58 -22.23 14.69 -3.02 -0.04 -22.27 16 20 N -0.62 -13.68 3.37 -828.41 -2.79 -16.48 16 21 C 0.11 1.34 6.47 85.51 0.55 1.89 16 22 C -0.16 -1.41 10.87 26.24 0.29 -1.12 16 23 C -0.17 -2.14 10.87 26.24 0.29 -1.86 16 24 C 0.12 2.42 7.00 85.51 0.60 3.02 16 25 C 0.15 4.03 8.62 83.64 0.72 4.75 16 26 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 27 H 0.03 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.02 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.07 2.83 6.01 -2.39 -0.01 2.81 16 31 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 36 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -90.35 342.98 2.72 -87.63 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.04 Total: 7.16 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 5.42 Total: 17.55 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -5.66 Total: -105.46 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.09 Total: -57.00 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -90.35 2.72 -87.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269025242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.800 kcal (2) G-P(sol) polarization free energy of solvation -90.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds