Wall clock time and date at job start Tue Mar 31 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46781 * 2 1 4 4 C 1.50694 * 109.47200 * 240.00165 * 2 1 3 5 5 O 1.21289 * 119.99745 * 239.99881 * 4 2 1 6 6 N 1.34771 * 120.00238 * 59.99902 * 4 2 1 7 7 C 1.46500 * 119.99960 * 180.02562 * 6 4 2 8 8 C 1.50706 * 109.46929 * 179.97438 * 7 6 4 9 9 H 1.07996 * 120.00170 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99673 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99900 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99564 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.46981 * 90.00522 * 12 10 8 14 14 H 1.48498 * 109.46874 * 210.00264 * 12 10 8 15 15 H 1.48499 * 109.47089 * 330.00227 * 12 10 8 16 16 N 1.46499 * 109.47035 * 119.99556 * 2 1 3 17 17 C 1.36319 * 126.27499 * 59.98034 * 16 2 1 18 18 N 1.30143 * 109.97906 * 180.02562 * 17 16 2 19 19 C 1.35474 * 109.43946 * 359.97438 * 18 17 16 20 20 C 1.37201 * 126.28076 * 239.97849 * 16 2 1 21 21 N 1.32885 * 134.91708 * 0.03118 * 20 16 2 22 22 C 1.31654 * 120.63646 * 179.97438 * 21 20 16 23 23 N 1.32038 * 122.46611 * 0.03105 * 22 21 20 24 24 C 1.32912 * 121.18994 * 359.97438 * 23 22 21 25 25 N 1.38401 * 120.77153 * 180.02562 * 24 23 22 26 26 H 1.09007 * 109.47137 * 300.00002 * 1 2 3 27 27 H 1.08995 * 109.47399 * 59.99817 * 1 2 3 28 28 H 1.09004 * 109.47234 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00231 * 359.97438 * 6 4 2 30 30 H 1.08999 * 109.47000 * 299.99552 * 7 6 4 31 31 H 1.08994 * 109.47498 * 59.99853 * 7 6 4 32 32 H 0.97012 * 119.99620 * 179.97438 * 11 10 8 33 33 H 1.08005 * 125.01445 * 0.05505 * 17 16 2 34 34 H 1.07998 * 118.76671 * 180.02562 * 22 21 20 35 35 H 0.96997 * 119.99603 * 359.97438 * 25 24 23 36 36 H 0.96997 * 119.99570 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9409 -3.6506 8 6 1.6919 -0.2307 -4.8812 9 1 1.0714 0.6476 -4.7821 10 6 2.0250 -0.7019 -6.1334 11 7 2.7811 -1.7712 -6.2540 12 14 1.4024 0.1788 -7.6586 13 1 2.3807 1.2203 -8.0628 14 1 1.2373 -0.8003 -8.7628 15 1 0.0943 0.8165 -7.3627 16 7 2.0183 -0.6905 1.1962 17 6 1.7688 -1.9864 1.5378 18 7 2.3569 -2.2707 2.6634 19 6 3.0199 -1.1787 3.1141 20 6 2.8106 -0.1516 2.1782 21 7 3.3619 1.0386 2.3911 22 6 4.0951 1.2563 3.4628 23 7 4.3206 0.3228 4.3689 24 6 3.8108 -0.8980 4.2411 25 7 4.0523 -1.8698 5.1965 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.1488 0.5385 -2.5436 30 1 3.2847 -0.9412 -3.6508 31 1 1.8310 -1.9683 -3.6505 32 1 3.0151 -2.1028 -7.1351 33 1 1.1715 -2.6757 0.9594 34 1 4.5283 2.2352 3.6060 35 1 4.5995 -1.6636 5.9704 36 1 3.6750 -2.7572 5.0917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328359310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:42 Heat of formation + Delta-G solvation = 62.763973 kcal Electronic energy + Delta-G solvation = -22358.494800 eV Core-core repulsion = 18878.698465 eV Total energy + Delta-G solvation = -3479.796335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.55989 -39.71664 -38.71765 -35.83343 -34.61716 -34.42975 -32.50378 -32.05615 -30.37185 -29.23945 -27.38606 -24.89838 -24.19796 -23.56053 -22.76995 -21.03250 -19.81176 -18.61526 -18.47923 -17.49476 -16.57493 -16.38164 -16.14959 -15.56388 -15.19656 -14.95731 -14.76475 -14.52356 -14.13636 -13.98399 -13.65047 -13.23002 -12.63576 -12.55205 -12.20583 -12.12176 -12.02589 -11.73228 -11.47268 -11.07799 -10.96349 -10.42867 -10.36942 -10.15266 -9.52050 -9.47907 -9.11351 -9.08510 -8.86168 -8.11168 -7.92410 -6.25913 -4.33967 0.88626 1.35600 2.19435 2.77130 2.97460 3.18773 3.19317 3.25102 3.27020 3.71126 3.92876 4.00490 4.11117 4.26074 4.40721 4.68001 4.76125 4.84500 5.03450 5.08980 5.10689 5.37301 5.41253 5.72206 5.81281 5.92830 6.39885 6.65387 6.83751 7.03430 7.12764 7.17232 7.36322 7.50630 7.52912 7.69851 7.84290 8.27600 8.36323 8.58851 8.82589 9.32784 10.84085 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.033158 B = 0.003219 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.234102 B = 8695.790073 C = 8804.180761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.115 3.885 3 H 0.130 0.870 4 C 0.489 3.511 5 O -0.540 6.540 6 N -0.700 5.700 7 C 0.250 3.750 8 C -0.547 4.547 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.884 5.884 12 Si 0.905 3.095 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 N -0.449 5.449 17 C 0.287 3.713 18 N -0.474 5.474 19 C -0.105 4.105 20 C 0.300 3.700 21 N -0.556 5.556 22 C 0.355 3.645 23 N -0.596 5.596 24 C 0.504 3.496 25 N -0.822 5.822 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.393 0.607 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.267 0.733 33 H 0.218 0.782 34 H 0.202 0.798 35 H 0.407 0.593 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 3.993 19.072 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 H 0.147 0.853 4 C 0.271 3.729 5 O -0.418 6.418 6 N -0.348 5.348 7 C 0.130 3.870 8 C -0.585 4.585 9 H 0.082 0.918 10 C -0.139 4.139 11 N -0.521 5.521 12 Si 0.732 3.268 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.197 1.197 16 N -0.140 5.140 17 C 0.000 4.000 18 N -0.193 5.193 19 C -0.232 4.232 20 C 0.059 3.941 21 N -0.280 5.280 22 C 0.063 3.937 23 N -0.326 5.326 24 C 0.250 3.750 25 N -0.365 5.365 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.226 0.774 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.234 0.766 34 H 0.219 0.781 35 H 0.237 0.763 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.648 3.300 19.299 19.757 hybrid contribution -0.708 0.495 -1.432 1.672 sum -3.355 3.796 17.867 18.571 Atomic orbital electron populations 1.22135 0.90869 1.04229 1.04262 1.21505 0.96744 0.98297 0.82582 0.85263 1.20295 0.82053 0.85643 0.84909 1.90742 1.38195 1.26434 1.86400 1.46428 1.51203 1.31133 1.06026 1.19191 0.95473 0.92914 0.79399 1.21181 1.33579 1.13326 0.90407 0.91758 1.24953 0.94742 0.94935 0.99301 1.69971 1.35432 1.22310 1.24381 0.86391 0.79192 0.79277 0.81932 1.20396 1.20949 1.19677 1.44788 1.40112 1.11493 1.17576 1.25203 0.98815 0.83181 0.92778 1.70261 1.12654 1.25571 1.10780 1.19664 1.09532 0.94043 0.99947 1.18666 0.94258 0.91467 0.89707 1.67206 1.15838 1.20418 1.24563 1.24358 0.89284 0.97368 0.82684 1.67994 1.30475 1.00356 1.33787 1.17742 0.85287 0.87547 0.84401 1.42155 1.57025 1.12927 1.24388 0.90866 0.89178 0.90916 0.77363 0.95358 0.95194 0.92315 0.76591 0.78145 0.76263 0.75099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.14 37.16 0.34 -1.22 16 2 C 0.12 1.59 3.39 -69.09 -0.23 1.35 16 3 H 0.13 1.68 8.08 -51.93 -0.42 1.26 16 4 C 0.49 8.98 7.12 -10.99 -0.08 8.90 16 5 O -0.54 -12.23 15.48 5.55 0.09 -12.14 16 6 N -0.70 -13.40 5.44 -61.47 -0.33 -13.74 16 7 C 0.25 6.28 5.43 -5.19 -0.03 6.25 16 8 C -0.55 -14.14 9.28 -34.44 -0.32 -14.46 16 9 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.88 -25.34 13.29 55.43 0.74 -24.61 16 12 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 N -0.45 -6.81 2.43 -111.75 -0.27 -7.08 16 17 C 0.29 4.20 10.72 -89.49 -0.96 3.24 16 18 N -0.47 -7.27 11.28 -11.84 -0.13 -7.40 16 19 C -0.10 -1.63 7.17 -84.54 -0.61 -2.23 16 20 C 0.30 4.84 8.01 -155.80 -1.25 3.59 16 21 N -0.56 -8.36 10.47 -13.90 -0.15 -8.51 16 22 C 0.35 4.46 12.25 -92.07 -1.13 3.33 16 23 N -0.60 -7.76 10.45 -13.61 -0.14 -7.91 16 24 C 0.50 6.75 7.87 -154.64 -1.22 5.53 16 25 N -0.82 -7.73 9.05 31.37 0.28 -7.44 16 26 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.09 0.78 7.56 -51.93 -0.39 0.39 16 28 H 0.07 0.71 7.94 -51.93 -0.41 0.29 16 29 H 0.39 6.25 7.74 -40.82 -0.32 5.93 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.27 7.20 8.31 -40.81 -0.34 6.86 16 33 H 0.22 2.61 8.06 -52.48 -0.42 2.19 16 34 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.41 2.85 8.95 -40.82 -0.37 2.48 16 36 H 0.42 3.51 8.85 -40.82 -0.36 3.15 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -34.48 320.16 -9.61 -44.09 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.92 Total: 8.80 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: -5.58 Total: 15.93 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -0.01 Total: -76.68 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.48 -9.61 -44.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328359310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.851 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds