Wall clock time and date at job start Tue Mar 31 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46781 * 2 1 4 4 C 1.50694 * 109.47200 * 240.00165 * 2 1 3 5 5 O 1.21289 * 119.99745 * 239.99881 * 4 2 1 6 6 N 1.34771 * 120.00238 * 59.99902 * 4 2 1 7 7 C 1.46500 * 119.99960 * 180.02562 * 6 4 2 8 8 C 1.50706 * 109.46929 * 179.97438 * 7 6 4 9 9 H 1.07996 * 120.00170 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99673 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99900 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99564 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.46981 * 90.00522 * 12 10 8 14 14 H 1.48498 * 109.46874 * 210.00264 * 12 10 8 15 15 H 1.48499 * 109.47089 * 330.00227 * 12 10 8 16 16 N 1.46499 * 109.47035 * 119.99556 * 2 1 3 17 17 C 1.36319 * 126.27499 * 59.98034 * 16 2 1 18 18 N 1.30143 * 109.97906 * 180.02562 * 17 16 2 19 19 C 1.35474 * 109.43946 * 359.97438 * 18 17 16 20 20 C 1.37201 * 126.28076 * 239.97849 * 16 2 1 21 21 N 1.32885 * 134.91708 * 0.03118 * 20 16 2 22 22 C 1.31654 * 120.63646 * 179.97438 * 21 20 16 23 23 N 1.32038 * 122.46611 * 0.03105 * 22 21 20 24 24 C 1.32912 * 121.18994 * 359.97438 * 23 22 21 25 25 N 1.38401 * 120.77153 * 180.02562 * 24 23 22 26 26 H 1.09007 * 109.47137 * 300.00002 * 1 2 3 27 27 H 1.08995 * 109.47399 * 59.99817 * 1 2 3 28 28 H 1.09004 * 109.47234 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00231 * 359.97438 * 6 4 2 30 30 H 1.08999 * 109.47000 * 299.99552 * 7 6 4 31 31 H 1.08994 * 109.47498 * 59.99853 * 7 6 4 32 32 H 0.97012 * 119.99620 * 179.97438 * 11 10 8 33 33 H 1.08005 * 125.01445 * 0.05505 * 17 16 2 34 34 H 1.07998 * 118.76671 * 180.02562 * 22 21 20 35 35 H 0.96997 * 119.99603 * 359.97438 * 25 24 23 36 36 H 0.96997 * 119.99570 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1947 -0.9409 -3.6506 8 6 1.6919 -0.2307 -4.8812 9 1 1.0714 0.6476 -4.7821 10 6 2.0250 -0.7019 -6.1334 11 7 2.7811 -1.7712 -6.2540 12 14 1.4024 0.1788 -7.6586 13 1 2.3807 1.2203 -8.0628 14 1 1.2373 -0.8003 -8.7628 15 1 0.0943 0.8165 -7.3627 16 7 2.0183 -0.6905 1.1962 17 6 1.7688 -1.9864 1.5378 18 7 2.3569 -2.2707 2.6634 19 6 3.0199 -1.1787 3.1141 20 6 2.8106 -0.1516 2.1782 21 7 3.3619 1.0386 2.3911 22 6 4.0951 1.2563 3.4628 23 7 4.3206 0.3228 4.3689 24 6 3.8108 -0.8980 4.2411 25 7 4.0523 -1.8698 5.1965 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.1488 0.5385 -2.5436 30 1 3.2847 -0.9412 -3.6508 31 1 1.8310 -1.9683 -3.6505 32 1 3.0151 -2.1028 -7.1351 33 1 1.1715 -2.6757 0.9594 34 1 4.5283 2.2352 3.6060 35 1 4.5995 -1.6636 5.9704 36 1 3.6750 -2.7572 5.0917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328359310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:41 Heat of formation + Delta-G solvation = 38.021298 kcal Electronic energy + Delta-G solvation = -22359.567723 eV Core-core repulsion = 18878.698465 eV Total energy + Delta-G solvation = -3480.869258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.64394 -41.02192 -39.98418 -36.83465 -36.27058 -35.73704 -34.39440 -33.05701 -31.51186 -30.27066 -29.22619 -26.10993 -25.23470 -24.82496 -24.34043 -22.40008 -21.17561 -19.85237 -19.51089 -18.87310 -17.92486 -17.55087 -17.45458 -16.86634 -16.82719 -16.40029 -15.99556 -15.72982 -15.39539 -15.01304 -14.94359 -14.61019 -14.15540 -14.02694 -13.44508 -13.42217 -13.17177 -12.94584 -12.93917 -12.72386 -12.52204 -12.22966 -11.51410 -11.47283 -11.30937 -10.82604 -10.76140 -10.32774 -10.15842 -9.95401 -8.94317 -8.30180 -6.46642 -0.14352 0.26901 1.09434 1.44600 1.45695 1.48297 1.57270 1.67184 2.23278 2.30572 2.44549 2.88120 2.96155 3.05662 3.10581 3.34315 3.63020 3.72963 3.77499 3.86792 4.10062 4.52624 4.58328 4.73903 4.90463 5.06732 5.08022 5.20719 5.38934 5.39794 5.59305 5.66153 5.81166 5.85087 6.13423 6.58067 6.62018 6.68986 6.73483 7.18228 7.28658 7.32570 8.81724 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.033158 B = 0.003219 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.234102 B = 8695.790073 C = 8804.180761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 H 0.142 0.858 4 C 0.490 3.510 5 O -0.586 6.586 6 N -0.691 5.691 7 C 0.268 3.732 8 C -0.554 4.554 9 H 0.088 0.912 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.982 3.018 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.252 1.252 16 N -0.454 5.454 17 C 0.275 3.725 18 N -0.482 5.482 19 C -0.131 4.131 20 C 0.279 3.721 21 N -0.576 5.576 22 C 0.357 3.643 23 N -0.599 5.599 24 C 0.499 3.501 25 N -0.801 5.801 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.412 0.588 30 H -0.015 1.015 31 H -0.004 1.004 32 H 0.268 0.732 33 H 0.234 0.766 34 H 0.240 0.760 35 H 0.421 0.579 36 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 5.996 19.774 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 H 0.159 0.841 4 C 0.275 3.725 5 O -0.467 6.467 6 N -0.341 5.341 7 C 0.145 3.855 8 C -0.592 4.592 9 H 0.106 0.894 10 C -0.195 4.195 11 N -0.570 5.570 12 Si 0.806 3.194 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.176 1.176 16 N -0.145 5.145 17 C -0.012 4.012 18 N -0.201 5.201 19 C -0.258 4.258 20 C 0.039 3.961 21 N -0.302 5.302 22 C 0.066 3.934 23 N -0.330 5.330 24 C 0.243 3.757 25 N -0.345 5.345 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.249 0.751 30 H 0.003 0.997 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.250 0.750 34 H 0.256 0.744 35 H 0.253 0.747 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.953 5.322 20.070 21.136 hybrid contribution -0.211 -0.167 -1.507 1.531 sum -4.165 5.155 18.563 19.710 Atomic orbital electron populations 1.22181 0.87475 1.05053 1.06049 1.21491 0.99049 0.97469 0.79612 0.84072 1.21112 0.80648 0.84908 0.85826 1.90720 1.40092 1.28703 1.87196 1.46067 1.51559 1.31521 1.04953 1.18593 0.92815 0.92008 0.82034 1.21609 1.33339 1.13769 0.90506 0.89413 1.26036 0.94748 0.95568 1.03150 1.70135 1.37195 1.24375 1.25250 0.85185 0.79315 0.77809 0.77112 1.19908 1.21188 1.17564 1.44908 1.40224 1.11705 1.17648 1.25593 0.99166 0.83492 0.92934 1.70215 1.12894 1.25778 1.11213 1.19992 1.10654 0.94095 1.01020 1.19021 0.94660 0.92212 0.90213 1.67296 1.17049 1.20095 1.25759 1.25219 0.87931 0.98590 0.81639 1.68128 1.30648 1.00277 1.33907 1.17992 0.84841 0.88296 0.84546 1.42139 1.56131 1.12434 1.23785 0.88964 0.87390 0.90653 0.75071 0.99721 0.98642 0.92293 0.75032 0.74395 0.74677 0.74438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.14 71.98 0.66 -1.97 16 2 C 0.13 3.42 3.39 44.24 0.15 3.57 16 3 H 0.14 3.42 8.08 -2.39 -0.02 3.41 16 4 C 0.49 18.11 7.12 87.66 0.62 18.73 16 5 O -0.59 -27.52 15.48 -3.06 -0.05 -27.56 16 6 N -0.69 -26.46 5.44 -466.79 -2.54 -29.00 16 7 C 0.27 13.90 5.43 85.64 0.46 14.36 16 8 C -0.55 -28.59 9.28 25.60 0.24 -28.35 16 9 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 10 C 0.00 0.26 5.46 84.66 0.46 0.72 16 11 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 12 Si 0.98 40.87 29.54 68.60 2.03 42.89 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 14 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 16 N -0.45 -13.54 2.43 -507.46 -1.23 -14.77 16 17 C 0.27 8.05 10.72 179.95 1.93 9.98 16 18 N -0.48 -14.77 11.28 -191.39 -2.16 -16.93 16 19 C -0.13 -4.01 7.17 39.69 0.28 -3.72 16 20 C 0.28 8.85 8.01 133.86 1.07 9.93 16 21 N -0.58 -16.69 10.47 -197.89 -2.07 -18.76 16 22 C 0.36 8.36 12.25 180.85 2.22 10.57 16 23 N -0.60 -14.65 10.45 -196.96 -2.06 -16.70 16 24 C 0.50 12.82 7.87 133.45 1.05 13.88 16 25 N -0.80 -13.94 9.05 -54.65 -0.49 -14.44 16 26 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.11 1.52 7.56 -2.39 -0.02 1.51 16 28 H 0.07 1.31 7.94 -2.39 -0.02 1.29 16 29 H 0.41 12.45 7.74 -92.71 -0.72 11.73 16 30 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 33 H 0.23 5.64 8.06 -2.91 -0.02 5.61 16 34 H 0.24 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.42 5.10 8.95 -92.71 -0.83 4.27 16 36 H 0.42 6.61 8.85 -92.71 -0.82 5.79 16 Total: -1.00 -77.19 320.16 -0.34 -77.54 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -1.20 Total: 24.55 kcal Atomic # 6 Polarization: 38.55 SS G_CDS: 9.15 Total: 47.70 kcal Atomic # 7 Polarization: -154.84 SS G_CDS: -10.27 Total: -165.11 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -77.19 -0.34 -77.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328359310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.558 kcal (2) G-P(sol) polarization free energy of solvation -77.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds