Wall clock time and date at job start Tue Mar 31 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48501 * 109.47266 * 89.99804 * 3 2 1 5 5 H 1.48499 * 109.46684 * 209.99935 * 3 2 1 6 6 H 1.48499 * 109.47124 * 329.99646 * 3 2 1 7 7 C 1.38804 * 119.99842 * 180.27149 * 2 1 3 8 8 H 1.08006 * 120.00345 * 15.04683 * 7 2 1 9 9 N 1.36936 * 120.00237 * 195.05312 * 7 2 1 10 10 C 1.47077 * 136.05462 * 7.44964 * 9 7 2 11 11 C 1.53762 * 87.88391 * 152.97216 * 10 9 7 12 12 O 1.42899 * 114.39339 * 272.67954 * 11 10 9 13 13 C 1.53000 * 114.08340 * 139.78330 * 11 10 9 14 14 N 1.46498 * 109.47266 * 86.55883 * 13 11 10 15 15 C 1.34777 * 120.00059 * 179.97438 * 14 13 11 16 16 O 1.21282 * 120.00110 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99991 * 180.02562 * 15 14 13 18 18 C 1.50701 * 109.47072 * 180.02562 * 17 15 14 19 19 C 1.38236 * 119.99425 * 269.72643 * 18 17 15 20 20 C 1.38243 * 119.99245 * 179.77031 * 19 18 17 21 21 C 1.38233 * 120.00360 * 0.47628 * 20 19 18 22 22 C 1.38244 * 119.99731 * 359.80206 * 21 20 19 23 23 C 1.38234 * 119.99840 * 89.99955 * 18 17 15 24 24 C 1.47069 * 136.06301 * 187.83484 * 9 7 2 25 25 H 0.96999 * 120.00088 * 174.91478 * 1 2 3 26 26 H 1.08999 * 113.46528 * 267.70391 * 10 9 7 27 27 H 1.08996 * 113.46472 * 38.14679 * 10 9 7 28 28 H 0.96703 * 113.99756 * 273.58502 * 12 11 10 29 29 H 1.08998 * 109.46826 * 206.55980 * 13 11 10 30 30 H 1.08998 * 109.47192 * 326.55918 * 13 11 10 31 31 H 0.96998 * 119.99730 * 0.02562 * 14 13 11 32 32 H 1.09001 * 109.46908 * 300.00657 * 17 15 14 33 33 H 1.08998 * 109.47077 * 60.00428 * 17 15 14 34 34 H 1.07998 * 120.00479 * 359.97438 * 19 18 17 35 35 H 1.07996 * 119.99745 * 180.25638 * 20 19 18 36 36 H 1.07998 * 120.00180 * 179.77031 * 21 20 19 37 37 H 1.08002 * 119.99587 * 179.97438 * 22 21 20 38 38 H 1.07991 * 120.00318 * 0.02562 * 23 18 17 39 39 H 1.08997 * 113.46122 * 321.86021 * 24 9 7 40 40 H 1.09004 * 113.46712 * 92.23779 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0057 8 1 1.4980 -2.1203 -0.2529 9 7 3.3443 -1.2240 0.3022 10 6 4.3313 -0.2560 0.8042 11 6 5.1075 -1.4423 1.3996 12 8 4.6893 -1.8221 2.7121 13 6 6.6264 -1.3309 1.2538 14 7 7.1707 -0.5695 2.3807 15 6 8.4968 -0.3440 2.4640 16 8 9.2396 -0.7712 1.6056 17 6 9.0568 0.4388 3.6236 18 6 10.5529 0.5485 3.4799 19 6 11.3733 -0.4132 4.0393 20 6 12.7455 -0.3150 3.9034 21 6 13.2976 0.7500 3.2166 22 6 12.4774 1.7148 2.6621 23 6 11.1050 1.6139 2.7935 24 6 4.4224 -2.2239 0.2700 25 1 -0.4850 -0.8367 -0.0745 26 1 4.8718 0.2629 0.0125 27 1 3.9296 0.4231 1.5562 28 1 5.1227 -1.3279 3.4214 29 1 7.0646 -2.3289 1.2441 30 1 6.8654 -0.8202 0.3210 31 1 6.5766 -0.2282 3.0674 32 1 8.6188 1.4369 3.6335 33 1 8.8175 -0.0722 4.5562 34 1 10.9421 -1.2429 4.5797 35 1 13.3863 -1.0685 4.3369 36 1 14.3698 0.8287 3.1136 37 1 12.9088 2.5471 2.1259 38 1 10.4642 2.3677 2.3607 39 1 4.0982 -3.2212 0.5669 40 1 4.9863 -2.2243 -0.6628 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672093516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:58 Heat of formation + Delta-G solvation = 7.395471 kcal Electronic energy + Delta-G solvation = -22394.781449 eV Core-core repulsion = 18983.831748 eV Total energy + Delta-G solvation = -3410.949701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.35087 -39.47071 -38.59493 -35.30475 -34.15827 -33.13083 -32.28435 -31.09743 -29.38345 -27.76162 -25.64931 -25.48022 -22.80163 -22.17070 -21.33257 -20.57436 -19.65672 -17.97358 -17.39446 -17.02551 -16.42392 -16.02459 -15.80436 -15.22449 -15.04493 -14.83265 -14.32021 -13.91933 -13.66854 -13.59581 -13.35583 -13.26387 -13.21612 -12.73914 -12.64065 -12.34797 -11.98632 -11.62199 -11.37790 -11.22349 -10.98185 -10.54897 -10.33086 -10.12993 -9.99007 -9.38819 -9.22289 -9.10754 -9.05339 -8.93451 -8.71901 -7.21467 -6.32349 -3.23365 1.11068 1.21512 2.51771 2.99265 3.35602 3.43885 3.58717 3.63612 4.23463 4.36841 4.53851 4.57198 4.57712 4.71738 4.78497 4.84271 4.89030 4.98928 5.05495 5.17057 5.29256 5.41666 5.43280 5.52133 5.75324 5.82325 5.82985 6.04307 6.09514 6.18168 6.23272 6.29773 6.30088 6.33889 6.36116 6.52861 6.78548 7.07447 7.29680 7.83856 8.09175 8.22758 8.95970 9.48553 10.33050 11.18127 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031365 B = 0.003130 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.514211 B = 8942.907442 C = 9405.447671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.025 4.025 3 Si 1.064 2.936 4 H -0.295 1.295 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.301 4.301 8 H 0.083 0.917 9 N -0.614 5.614 10 C 0.080 3.920 11 C 0.072 3.928 12 O -0.518 6.518 13 C 0.106 3.894 14 N -0.729 5.729 15 C 0.515 3.485 16 O -0.530 6.530 17 C -0.105 4.105 18 C -0.065 4.065 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.105 4.105 24 C 0.134 3.866 25 H 0.262 0.738 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.362 0.638 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.397 0.603 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.057 0.943 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.785 2.425 10.068 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.224 4.224 3 Si 0.896 3.104 4 H -0.222 1.222 5 H -0.209 1.209 6 H -0.222 1.222 7 C -0.427 4.427 8 H 0.100 0.900 9 N -0.341 5.341 10 C -0.046 4.046 11 C 0.029 3.971 12 O -0.321 6.321 13 C -0.018 4.018 14 N -0.383 5.383 15 C 0.301 3.699 16 O -0.406 6.406 17 C -0.145 4.145 18 C -0.065 4.065 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.123 4.123 24 C 0.007 3.993 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.208 0.792 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.232 0.768 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.075 0.925 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 24.438 3.317 9.070 26.277 hybrid contribution 0.174 -1.103 0.403 1.187 sum 24.613 2.214 9.473 26.466 Atomic orbital electron populations 1.70891 1.05366 1.29599 1.51511 1.25769 0.96517 1.00852 0.99235 0.83755 0.74526 0.75887 0.76278 1.22240 1.20936 1.22174 1.20108 0.80184 0.96093 1.46324 0.89952 1.45909 1.03517 1.07724 1.76926 1.23421 0.90867 0.93809 0.96525 1.23254 0.88986 0.99450 0.85386 1.86695 1.68103 1.63695 1.13635 1.21931 0.93258 0.96795 0.89844 1.45980 1.07745 1.57085 1.27534 1.20500 0.81862 0.80277 0.87299 1.90740 1.58131 1.50680 1.41021 1.20708 0.93236 1.02294 0.98232 1.19274 0.93534 0.95388 0.98322 1.20992 0.93638 0.97997 0.99743 1.21102 0.94980 0.98242 0.99520 1.21144 0.99722 0.94847 0.98326 1.21113 0.93596 0.99216 0.99871 1.21008 0.95251 0.97924 0.98135 1.22368 0.88865 0.95312 0.92713 0.92799 0.92903 0.92607 0.79193 0.90579 0.90034 0.76783 0.87701 0.87753 0.86222 0.86128 0.86237 0.86093 0.86160 0.92478 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.61 13.70 55.49 0.76 -28.85 16 2 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 3 Si 1.06 26.49 25.51 -169.99 -4.34 22.15 16 4 H -0.29 -6.96 6.97 56.52 0.39 -6.57 16 5 H -0.28 -6.49 5.65 56.52 0.32 -6.18 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.30 -8.79 11.03 -15.06 -0.17 -8.96 16 8 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 9 N -0.61 -15.19 3.62 -184.56 -0.67 -15.86 16 10 C 0.08 1.63 5.04 -8.36 -0.04 1.59 16 11 C 0.07 1.20 1.74 -89.97 -0.16 1.04 16 12 O -0.52 -8.53 13.56 -35.23 -0.48 -9.01 16 13 C 0.11 1.43 5.43 -4.04 -0.02 1.41 16 14 N -0.73 -7.85 5.34 -60.30 -0.32 -8.17 16 15 C 0.51 5.98 7.82 -10.99 -0.09 5.89 16 16 O -0.53 -8.43 16.03 5.56 0.09 -8.34 16 17 C -0.10 -0.84 5.83 -29.03 -0.17 -1.01 16 18 C -0.06 -0.64 4.37 -104.62 -0.46 -1.10 16 19 C -0.11 -1.01 9.70 -39.58 -0.38 -1.39 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 23 C -0.11 -1.03 9.70 -39.58 -0.38 -1.42 16 24 C 0.13 2.66 8.10 -8.50 -0.07 2.59 16 25 H 0.26 8.23 8.73 -40.82 -0.36 7.88 16 26 H 0.05 1.05 6.80 -51.93 -0.35 0.69 16 27 H 0.06 1.17 6.24 -51.93 -0.32 0.84 16 28 H 0.36 4.04 7.21 45.56 0.33 4.37 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 31 H 0.40 3.21 6.95 -40.82 -0.28 2.93 16 32 H 0.10 0.63 8.09 -51.93 -0.42 0.22 16 33 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -37.22 334.64 -8.06 -45.28 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.93 Total: 4.35 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.23 Total: -6.60 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.23 Total: -52.88 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.39 Total: -17.34 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.34 Total: 22.15 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.22 -8.06 -45.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672093516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.676 kcal (2) G-P(sol) polarization free energy of solvation -37.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds